Gvermi3735.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi3735.t1
Unique Name	Gvermi3735.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	622

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_41	contig	ScGOVlb_41:4117089..4118954 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	109871.XP_006681993.1
PFAMs	CAF1
Max annot lvl	4751\|Fungi
KEGG ko	ko:K01148,ko:K17427
KEGG Pathway	ko03018,map03018
GOs	GO:0000175,GO:0000228,GO:0000775,GO:0000779,GO:0000780,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006342,GO:0006355,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008408,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016458,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019219,GO:0019222,GO:0022607,GO:0031047,GO:0031048,GO:0031123,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031497,GO:0031507,GO:0031974,GO:0031981,GO:0034401,GO:0034470,GO:0034641,GO:0034660,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043628,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0070828,GO:0070868,GO:0070869,GO:0070924,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097549,GO:0098687,GO:0110008,GO:0140098,GO:1901360,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Evalue	7.23e-30
EggNOG OGs	KOG1990@1\|root,KOG1990@2759\|Eukaryota,38GZE@33154\|Opisthokonta,3NX9X@4751\|Fungi
EC	3.1.13.4
Description	CAF1 family ribonuclease
COG category	L
BRITE	br01610,ko00000,ko00001,ko01000,ko03011,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi3735	Gvermi3735	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_41 4117089..4118954 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3735.t1.start1	Gvermi3735.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_41 4117089..4117091 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3735.t1.CDS1	Gvermi3735.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_41 4117089..4118954 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3735.t1.exon1	Gvermi3735.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_41 4117089..4118954 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3735.t1.stop1	Gvermi3735.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_41 4118952..4118954 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3735.t1	Gvermi3735.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_41 4117089..4118954 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_41:4117089..4118954+
coding sequence from alignment at ScGOVlb_41:4117089..4118954+

mRNA sequence

>Gvermi3735.t1 ID=Gvermi3735.t1|Name=Gvermi3735.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=622bp
MDVVEVNFVTALAILREHLPSANFVSFDLEFTGLGEHRPSQLDTPQVRYN
TAREDASAFPPIQFGLCLFRKSRPLTSRAESDSPEVEKNWESLSFNFNLF
PRAVYYPPNSRYPLFDKGFKLQSSTVMFLIEHGFDFQKSFRDGVTWLRED
QEREFFKLVVEDLRVRRQRTCDLDKLNAEEGMLLKEWSANIDQWLAVLKE
QKATCTDGDAAPKIKSFMLPSTPWMRKIICDLVRLRYPRMAAQTIPTQDG
NKMLKLSLYPSEKAANEHYQEALEKDARDIIFRASMFRHVVDELRLCKKP
IVMHNGLMDLTKLYANFIGMLPSELNGFKKVIRENFPVVFDTKRMVDRLC
IKDEEVRRGMLKVRGVSEILTLLRKVAKKRNLKVVIRTFIPQETHDQEFA
EMEHVVHSTELKGFATNAISDEVFDKDSFGFGRYLSHGVEHEAGHDALET
GLVFTYVDILGEHTANELSLSFCGGFRCINLGSDKDEENSWFNMAVIIVK
GIVTDDVANGEEQRNGRGKARFMHTVEVVTKDTKFRADQSDILLASKDVC
IVILNTKSVGKRKRDEDGQDDNGDGAGDAAMSGQIGVVIENGRRHGVEVM
RYSREILGQNWQWLSRTRMFA*

spliced messenger RNA

>Gvermi3735.t1 ID=Gvermi3735.t1|Name=Gvermi3735.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1866bp|location=Sequence derived from alignment at ScGOVlb_41:4117089..4118954+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGTCGTTGAAGTTAACTTTGTAACTGCCCTTGCAATCTTGCGTGA
GCATCTTCCGTCTGCAAACTTCGTCTCGTTTGATTTGGAGTTCACCGGCC
TTGGAGAGCATCGTCCTTCTCAACTAGACACCCCACAAGTTCGCTACAAC
ACTGCGAGGGAAGATGCGAGCGCCTTTCCTCCCATCCAATTTGGCCTTTG
TCTGTTTCGCAAATCAAGGCCCTTGACCTCACGAGCGGAATCTGACTCTC
CAGAAGTGGAGAAAAACTGGGAGTCTCTGTCTTTCAATTTCAATCTGTTT
CCGCGAGCTGTATATTATCCCCCTAATTCCCGATATCCTCTTTTCGACAA
GGGATTTAAACTTCAATCATCTACAGTCATGTTCCTCATCGAACATGGCT
TTGATTTTCAAAAATCATTTCGGGATGGTGTAACGTGGCTGCGGGAAGAT
CAAGAACGAGAATTTTTTAAGCTTGTCGTGGAGGATTTGCGTGTGCGAAG
ACAAAGAACCTGCGACCTCGACAAGCTGAACGCAGAAGAAGGAATGCTGC
TCAAAGAATGGAGCGCGAACATCGATCAGTGGCTTGCAGTCTTAAAAGAG
CAAAAAGCGACATGCACAGATGGAGACGCTGCGCCAAAGATCAAATCATT
TATGCTTCCCTCAACGCCGTGGATGAGAAAGATCATCTGCGACCTTGTAC
GGTTGCGATACCCCCGAATGGCTGCGCAAACAATCCCAACTCAGGACGGC
AACAAGATGCTAAAGCTATCGCTATATCCGTCCGAGAAAGCTGCCAACGA
GCATTACCAAGAAGCACTGGAAAAGGATGCTCGAGACATTATTTTCAGGG
CATCTATGTTTCGACATGTGGTCGATGAGTTGCGTCTGTGCAAAAAACCA
ATCGTTATGCACAACGGATTGATGGATCTAACCAAATTATACGCCAACTT
TATCGGAATGCTTCCGTCGGAATTGAATGGTTTTAAAAAAGTCATTCGAG
AAAATTTTCCCGTGGTATTCGATACAAAACGTATGGTGGATAGATTGTGC
ATAAAGGATGAGGAAGTGAGGAGGGGGATGCTCAAAGTGAGAGGTGTTTC
CGAAATATTAACATTGTTGCGGAAGGTTGCGAAGAAGAGAAATTTGAAAG
TGGTAATAAGGACATTCATACCCCAAGAAACGCACGATCAAGAGTTCGCA
GAGATGGAACATGTGGTGCATTCGACAGAGTTGAAAGGTTTTGCAACAAA
CGCAATCAGTGACGAAGTTTTTGACAAAGATTCATTTGGGTTTGGAAGAT
ACTTGAGTCACGGCGTTGAACATGAAGCGGGGCACGATGCTCTAGAGACT
GGACTGGTGTTCACGTACGTGGATATTCTTGGAGAGCACACAGCAAACGA
ACTATCGTTGAGCTTTTGCGGAGGGTTTAGATGCATTAATCTCGGGAGTG
ATAAAGACGAAGAGAATTCGTGGTTTAACATGGCTGTAATAATCGTTAAG
GGTATAGTCACAGATGACGTAGCGAATGGAGAAGAGCAGCGAAATGGACG
TGGGAAAGCCAGGTTCATGCACACCGTAGAAGTTGTCACGAAAGACACCA
AGTTTCGAGCGGATCAAAGTGACATTTTGCTCGCCAGTAAAGATGTTTGC
ATTGTTATTCTGAACACCAAAAGTGTTGGGAAACGAAAACGGGATGAAGA
TGGTCAAGATGACAATGGAGACGGGGCGGGTGATGCGGCAATGAGTGGGC
AAATTGGGGTGGTGATTGAGAACGGGAGGAGACACGGGGTCGAGGTGATG
CGCTATTCGCGAGAAATTCTAGGACAGAATTGGCAATGGCTGTCAAGAAC
GCGGATGTTCGCGTAG

protein sequence of Gvermi3735.t1

>Gvermi3735.t1 ID=Gvermi3735.t1|Name=Gvermi3735.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=622bp
MDVVEVNFVTALAILREHLPSANFVSFDLEFTGLGEHRPSQLDTPQVRYN
TAREDASAFPPIQFGLCLFRKSRPLTSRAESDSPEVEKNWESLSFNFNLF
PRAVYYPPNSRYPLFDKGFKLQSSTVMFLIEHGFDFQKSFRDGVTWLRED
QEREFFKLVVEDLRVRRQRTCDLDKLNAEEGMLLKEWSANIDQWLAVLKE
QKATCTDGDAAPKIKSFMLPSTPWMRKIICDLVRLRYPRMAAQTIPTQDG
NKMLKLSLYPSEKAANEHYQEALEKDARDIIFRASMFRHVVDELRLCKKP
IVMHNGLMDLTKLYANFIGMLPSELNGFKKVIRENFPVVFDTKRMVDRLC
IKDEEVRRGMLKVRGVSEILTLLRKVAKKRNLKVVIRTFIPQETHDQEFA
EMEHVVHSTELKGFATNAISDEVFDKDSFGFGRYLSHGVEHEAGHDALET
GLVFTYVDILGEHTANELSLSFCGGFRCINLGSDKDEENSWFNMAVIIVK
GIVTDDVANGEEQRNGRGKARFMHTVEVVTKDTKFRADQSDILLASKDVC
IVILNTKSVGKRKRDEDGQDDNGDGAGDAAMSGQIGVVIENGRRHGVEVM
RYSREILGQNWQWLSRTRMFA*

mRNA from alignment at ScGOVlb_41:4117089..4118954+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi3735.t1 ID=Gvermi3735.t1|Name=Gvermi3735.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1866bp|location=Sequence derived from alignment at ScGOVlb_41:4117089..4118954+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACGTCGTTGAAGTTAACTTTGTAACTGCCCTTGCAATCTTGCGTGA
GCATCTTCCGTCTGCAAACTTCGTCTCGTTTGATTTGGAGTTCACCGGCC
TTGGAGAGCATCGTCCTTCTCAACTAGACACCCCACAAGTTCGCTACAAC
ACTGCGAGGGAAGATGCGAGCGCCTTTCCTCCCATCCAATTTGGCCTTTG
TCTGTTTCGCAAATCAAGGCCCTTGACCTCACGAGCGGAATCTGACTCTC
CAGAAGTGGAGAAAAACTGGGAGTCTCTGTCTTTCAATTTCAATCTGTTT
CCGCGAGCTGTATATTATCCCCCTAATTCCCGATATCCTCTTTTCGACAA
GGGATTTAAACTTCAATCATCTACAGTCATGTTCCTCATCGAACATGGCT
TTGATTTTCAAAAATCATTTCGGGATGGTGTAACGTGGCTGCGGGAAGAT
CAAGAACGAGAATTTTTTAAGCTTGTCGTGGAGGATTTGCGTGTGCGAAG
ACAAAGAACCTGCGACCTCGACAAGCTGAACGCAGAAGAAGGAATGCTGC
TCAAAGAATGGAGCGCGAACATCGATCAGTGGCTTGCAGTCTTAAAAGAG
CAAAAAGCGACATGCACAGATGGAGACGCTGCGCCAAAGATCAAATCATT
TATGCTTCCCTCAACGCCGTGGATGAGAAAGATCATCTGCGACCTTGTAC
GGTTGCGATACCCCCGAATGGCTGCGCAAACAATCCCAACTCAGGACGGC
AACAAGATGCTAAAGCTATCGCTATATCCGTCCGAGAAAGCTGCCAACGA
GCATTACCAAGAAGCACTGGAAAAGGATGCTCGAGACATTATTTTCAGGG
CATCTATGTTTCGACATGTGGTCGATGAGTTGCGTCTGTGCAAAAAACCA
ATCGTTATGCACAACGGATTGATGGATCTAACCAAATTATACGCCAACTT
TATCGGAATGCTTCCGTCGGAATTGAATGGTTTTAAAAAAGTCATTCGAG
AAAATTTTCCCGTGGTATTCGATACAAAACGTATGGTGGATAGATTGTGC
ATAAAGGATGAGGAAGTGAGGAGGGGGATGCTCAAAGTGAGAGGTGTTTC
CGAAATATTAACATTGTTGCGGAAGGTTGCGAAGAAGAGAAATTTGAAAG
TGGTAATAAGGACATTCATACCCCAAGAAACGCACGATCAAGAGTTCGCA
GAGATGGAACATGTGGTGCATTCGACAGAGTTGAAAGGTTTTGCAACAAA
CGCAATCAGTGACGAAGTTTTTGACAAAGATTCATTTGGGTTTGGAAGAT
ACTTGAGTCACGGCGTTGAACATGAAGCGGGGCACGATGCTCTAGAGACT
GGACTGGTGTTCACGTACGTGGATATTCTTGGAGAGCACACAGCAAACGA
ACTATCGTTGAGCTTTTGCGGAGGGTTTAGATGCATTAATCTCGGGAGTG
ATAAAGACGAAGAGAATTCGTGGTTTAACATGGCTGTAATAATCGTTAAG
GGTATAGTCACAGATGACGTAGCGAATGGAGAAGAGCAGCGAAATGGACG
TGGGAAAGCCAGGTTCATGCACACCGTAGAAGTTGTCACGAAAGACACCA
AGTTTCGAGCGGATCAAAGTGACATTTTGCTCGCCAGTAAAGATGTTTGC
ATTGTTATTCTGAACACCAAAAGTGTTGGGAAACGAAAACGGGATGAAGA
TGGTCAAGATGACAATGGAGACGGGGCGGGTGATGCGGCAATGAGTGGGC
AAATTGGGGTGGTGATTGAGAACGGGAGGAGACACGGGGTCGAGGTGATG
CGCTATTCGCGAGAAATTCTAGGACAGAATTGGCAATGGCTGTCAAGAAC
GCGGATGTTCGCGTAG

Coding sequence (CDS) from alignment at ScGOVlb_41:4117089..4118954+

>Gvermi3735.t1 ID=Gvermi3735.t1|Name=Gvermi3735.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1866bp|location=Sequence derived from alignment at ScGOVlb_41:4117089..4118954+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACGTCGTTGAAGTTAACTTTGTAACTGCCCTTGCAATCTTGCGTGA
GCATCTTCCGTCTGCAAACTTCGTCTCGTTTGATTTGGAGTTCACCGGCC
TTGGAGAGCATCGTCCTTCTCAACTAGACACCCCACAAGTTCGCTACAAC
ACTGCGAGGGAAGATGCGAGCGCCTTTCCTCCCATCCAATTTGGCCTTTG
TCTGTTTCGCAAATCAAGGCCCTTGACCTCACGAGCGGAATCTGACTCTC
CAGAAGTGGAGAAAAACTGGGAGTCTCTGTCTTTCAATTTCAATCTGTTT
CCGCGAGCTGTATATTATCCCCCTAATTCCCGATATCCTCTTTTCGACAA
GGGATTTAAACTTCAATCATCTACAGTCATGTTCCTCATCGAACATGGCT
TTGATTTTCAAAAATCATTTCGGGATGGTGTAACGTGGCTGCGGGAAGAT
CAAGAACGAGAATTTTTTAAGCTTGTCGTGGAGGATTTGCGTGTGCGAAG
ACAAAGAACCTGCGACCTCGACAAGCTGAACGCAGAAGAAGGAATGCTGC
TCAAAGAATGGAGCGCGAACATCGATCAGTGGCTTGCAGTCTTAAAAGAG
CAAAAAGCGACATGCACAGATGGAGACGCTGCGCCAAAGATCAAATCATT
TATGCTTCCCTCAACGCCGTGGATGAGAAAGATCATCTGCGACCTTGTAC
GGTTGCGATACCCCCGAATGGCTGCGCAAACAATCCCAACTCAGGACGGC
AACAAGATGCTAAAGCTATCGCTATATCCGTCCGAGAAAGCTGCCAACGA
GCATTACCAAGAAGCACTGGAAAAGGATGCTCGAGACATTATTTTCAGGG
CATCTATGTTTCGACATGTGGTCGATGAGTTGCGTCTGTGCAAAAAACCA
ATCGTTATGCACAACGGATTGATGGATCTAACCAAATTATACGCCAACTT
TATCGGAATGCTTCCGTCGGAATTGAATGGTTTTAAAAAAGTCATTCGAG
AAAATTTTCCCGTGGTATTCGATACAAAACGTATGGTGGATAGATTGTGC
ATAAAGGATGAGGAAGTGAGGAGGGGGATGCTCAAAGTGAGAGGTGTTTC
CGAAATATTAACATTGTTGCGGAAGGTTGCGAAGAAGAGAAATTTGAAAG
TGGTAATAAGGACATTCATACCCCAAGAAACGCACGATCAAGAGTTCGCA
GAGATGGAACATGTGGTGCATTCGACAGAGTTGAAAGGTTTTGCAACAAA
CGCAATCAGTGACGAAGTTTTTGACAAAGATTCATTTGGGTTTGGAAGAT
ACTTGAGTCACGGCGTTGAACATGAAGCGGGGCACGATGCTCTAGAGACT
GGACTGGTGTTCACGTACGTGGATATTCTTGGAGAGCACACAGCAAACGA
ACTATCGTTGAGCTTTTGCGGAGGGTTTAGATGCATTAATCTCGGGAGTG
ATAAAGACGAAGAGAATTCGTGGTTTAACATGGCTGTAATAATCGTTAAG
GGTATAGTCACAGATGACGTAGCGAATGGAGAAGAGCAGCGAAATGGACG
TGGGAAAGCCAGGTTCATGCACACCGTAGAAGTTGTCACGAAAGACACCA
AGTTTCGAGCGGATCAAAGTGACATTTTGCTCGCCAGTAAAGATGTTTGC
ATTGTTATTCTGAACACCAAAAGTGTTGGGAAACGAAAACGGGATGAAGA
TGGTCAAGATGACAATGGAGACGGGGCGGGTGATGCGGCAATGAGTGGGC
AAATTGGGGTGGTGATTGAGAACGGGAGGAGACACGGGGTCGAGGTGATG
CGCTATTCGCGAGAAATTCTAGGACAGAATTGGCAATGGCTGTCAAGAAC
GCGGATGTTCGCGTAG