Gvermi3725.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3725.t1
Unique NameGvermi3725.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length418
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:4082696..4083949 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707861.1
PFAMsBCDHK_Adom3,HATPase_c
Max annot lvl2759|Eukaryota
KEGG koko:K00898
Evalue9.02e-141
EggNOG OGsCOG0642@1|root,KOG0787@2759|Eukaryota
EC2.7.11.2
Descriptionpyruvate dehydrogenase (acetyl-transferring) kinase activity
COG categoryT
BRITEko00000,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3725Gvermi3725Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 4082696..4083949 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3725.t1.stop1Gvermi3725.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 4082696..4082698 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3725.t1.CDS1Gvermi3725.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4082696..4083949 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3725.t1.exon1Gvermi3725.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4082696..4083949 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3725.t1.start1Gvermi3725.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 4083947..4083949 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3725.t1Gvermi3725.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 4082696..4083949 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3725.t1 ID=Gvermi3725.t1|Name=Gvermi3725.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=418bp
MSAPAAAAAAAAAAAAAAAAAAAPGATAVAAAAATAAARSAPAVRQLLRH
SLRHSPKALHREIARAASHRGTPLTVRELYAFGQRALLATSATRLHSAQW
LHGELPVRLAHRVQELQELPYGLADMPSVRQVKHMYQTSFCDIVESGLPQ
THAQEQRFSHMLSSIRNRHDDVVRLIAKGVIELKEHCGRGTSDLEIRSFL
DRFYMSRIGIRVLMSHHLALGDPSPGMAGVINRFCRPSHLIEQAVVATRS
LAYQHYGEAPDVQIRGNTQLQFPYIDSHLYLCLFELLKNSLRATVETHRD
ADVLPPVRCIIADGVEDVTVKISDEGGGFRRSEMNRVWTYLFTTAKLPPK
QLLEMEDRCDRTNRPDPIAGFGYGLPLSRLYARYWGGELALASMEGYGTD
AYLHLSKLGDKKECLTA*
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spliced messenger RNA

>Gvermi3725.t1 ID=Gvermi3725.t1|Name=Gvermi3725.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1254bp|location=Sequence derived from alignment at ScGOVlb_41:4082696..4083949- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCGCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGC
CGCCGCCGCCGCCGCCGCGCCCGGCGCCACCGCCGTCGCGGCCGCGGCCG
CCACCGCGGCCGCGCGCTCCGCGCCCGCCGTGCGGCAGCTGCTGCGGCAC
TCGCTGCGCCACTCGCCCAAGGCGCTGCACCGCGAAATCGCGCGCGCCGC
GTCGCACCGCGGCACGCCGCTCACCGTGCGCGAGCTGTACGCGTTCGGGC
AGCGCGCGCTGCTGGCCACCAGCGCCACGCGGCTGCACTCGGCGCAGTGG
CTGCACGGCGAGCTGCCCGTGCGGCTGGCGCACCGCGTGCAGGAGCTGCA
GGAGCTGCCGTACGGGCTGGCCGACATGCCGTCCGTCAGGCAGGTCAAGC
ACATGTACCAGACGTCGTTCTGCGACATTGTGGAGTCGGGGCTGCCGCAG
ACGCACGCGCAGGAGCAGCGCTTTTCGCACATGCTCAGCAGCATTCGCAA
CCGGCACGACGACGTGGTGCGACTCATCGCCAAGGGCGTCATCGAGCTCA
AGGAGCACTGCGGGCGCGGCACGTCCGACCTGGAGATCCGCTCCTTTCTG
GACCGCTTCTACATGTCGCGCATTGGCATCCGCGTGCTGATGAGTCACCA
CCTGGCGCTCGGCGACCCGTCGCCGGGCATGGCCGGCGTCATCAATCGCT
TCTGCAGGCCGTCGCACCTCATTGAGCAGGCTGTGGTGGCCACGCGCTCG
CTGGCGTACCAGCACTACGGCGAGGCGCCGGACGTGCAGATCCGCGGCAA
CACGCAGCTGCAGTTTCCGTACATTGACTCGCACTTGTATCTGTGCCTGT
TCGAACTGCTCAAGAACAGCCTGAGGGCGACGGTGGAAACGCACCGCGAC
GCGGACGTGTTGCCGCCCGTGAGGTGCATCATAGCCGATGGCGTGGAGGA
CGTGACTGTGAAGATCAGTGACGAGGGCGGCGGCTTCCGGCGCTCCGAAA
TGAACCGAGTGTGGACGTATCTGTTCACCACGGCCAAGTTGCCTCCGAAA
CAACTTTTGGAAATGGAAGATCGATGCGACCGCACGAACCGACCGGACCC
GATTGCCGGCTTTGGCTACGGCTTGCCTCTCAGCCGGCTGTATGCCAGAT
ACTGGGGTGGCGAGCTTGCGCTGGCAAGCATGGAAGGCTACGGCACTGAT
GCGTACCTGCACCTGTCCAAACTGGGCGACAAGAAGGAGTGCCTCACCGC
TTGA
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protein sequence of Gvermi3725.t1

>Gvermi3725.t1 ID=Gvermi3725.t1|Name=Gvermi3725.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=418bp
MSAPAAAAAAAAAAAAAAAAAAAPGATAVAAAAATAAARSAPAVRQLLRH
SLRHSPKALHREIARAASHRGTPLTVRELYAFGQRALLATSATRLHSAQW
LHGELPVRLAHRVQELQELPYGLADMPSVRQVKHMYQTSFCDIVESGLPQ
THAQEQRFSHMLSSIRNRHDDVVRLIAKGVIELKEHCGRGTSDLEIRSFL
DRFYMSRIGIRVLMSHHLALGDPSPGMAGVINRFCRPSHLIEQAVVATRS
LAYQHYGEAPDVQIRGNTQLQFPYIDSHLYLCLFELLKNSLRATVETHRD
ADVLPPVRCIIADGVEDVTVKISDEGGGFRRSEMNRVWTYLFTTAKLPPK
QLLEMEDRCDRTNRPDPIAGFGYGLPLSRLYARYWGGELALASMEGYGTD
AYLHLSKLGDKKECLTA*
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mRNA from alignment at ScGOVlb_41:4082696..4083949-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3725.t1 ID=Gvermi3725.t1|Name=Gvermi3725.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1254bp|location=Sequence derived from alignment at ScGOVlb_41:4082696..4083949- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTGCGCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGC
CGCCGCCGCCGCCGCCGCGCCCGGCGCCACCGCCGTCGCGGCCGCGGCCG
CCACCGCGGCCGCGCGCTCCGCGCCCGCCGTGCGGCAGCTGCTGCGGCAC
TCGCTGCGCCACTCGCCCAAGGCGCTGCACCGCGAAATCGCGCGCGCCGC
GTCGCACCGCGGCACGCCGCTCACCGTGCGCGAGCTGTACGCGTTCGGGC
AGCGCGCGCTGCTGGCCACCAGCGCCACGCGGCTGCACTCGGCGCAGTGG
CTGCACGGCGAGCTGCCCGTGCGGCTGGCGCACCGCGTGCAGGAGCTGCA
GGAGCTGCCGTACGGGCTGGCCGACATGCCGTCCGTCAGGCAGGTCAAGC
ACATGTACCAGACGTCGTTCTGCGACATTGTGGAGTCGGGGCTGCCGCAG
ACGCACGCGCAGGAGCAGCGCTTTTCGCACATGCTCAGCAGCATTCGCAA
CCGGCACGACGACGTGGTGCGACTCATCGCCAAGGGCGTCATCGAGCTCA
AGGAGCACTGCGGGCGCGGCACGTCCGACCTGGAGATCCGCTCCTTTCTG
GACCGCTTCTACATGTCGCGCATTGGCATCCGCGTGCTGATGAGTCACCA
CCTGGCGCTCGGCGACCCGTCGCCGGGCATGGCCGGCGTCATCAATCGCT
TCTGCAGGCCGTCGCACCTCATTGAGCAGGCTGTGGTGGCCACGCGCTCG
CTGGCGTACCAGCACTACGGCGAGGCGCCGGACGTGCAGATCCGCGGCAA
CACGCAGCTGCAGTTTCCGTACATTGACTCGCACTTGTATCTGTGCCTGT
TCGAACTGCTCAAGAACAGCCTGAGGGCGACGGTGGAAACGCACCGCGAC
GCGGACGTGTTGCCGCCCGTGAGGTGCATCATAGCCGATGGCGTGGAGGA
CGTGACTGTGAAGATCAGTGACGAGGGCGGCGGCTTCCGGCGCTCCGAAA
TGAACCGAGTGTGGACGTATCTGTTCACCACGGCCAAGTTGCCTCCGAAA
CAACTTTTGGAAATGGAAGATCGATGCGACCGCACGAACCGACCGGACCC
GATTGCCGGCTTTGGCTACGGCTTGCCTCTCAGCCGGCTGTATGCCAGAT
ACTGGGGTGGCGAGCTTGCGCTGGCAAGCATGGAAGGCTACGGCACTGAT
GCGTACCTGCACCTGTCCAAACTGGGCGACAAGAAGGAGTGCCTCACCGC
TTGA
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Coding sequence (CDS) from alignment at ScGOVlb_41:4082696..4083949-

>Gvermi3725.t1 ID=Gvermi3725.t1|Name=Gvermi3725.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1254bp|location=Sequence derived from alignment at ScGOVlb_41:4082696..4083949- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTGCGCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGC
CGCCGCCGCCGCCGCCGCGCCCGGCGCCACCGCCGTCGCGGCCGCGGCCG
CCACCGCGGCCGCGCGCTCCGCGCCCGCCGTGCGGCAGCTGCTGCGGCAC
TCGCTGCGCCACTCGCCCAAGGCGCTGCACCGCGAAATCGCGCGCGCCGC
GTCGCACCGCGGCACGCCGCTCACCGTGCGCGAGCTGTACGCGTTCGGGC
AGCGCGCGCTGCTGGCCACCAGCGCCACGCGGCTGCACTCGGCGCAGTGG
CTGCACGGCGAGCTGCCCGTGCGGCTGGCGCACCGCGTGCAGGAGCTGCA
GGAGCTGCCGTACGGGCTGGCCGACATGCCGTCCGTCAGGCAGGTCAAGC
ACATGTACCAGACGTCGTTCTGCGACATTGTGGAGTCGGGGCTGCCGCAG
ACGCACGCGCAGGAGCAGCGCTTTTCGCACATGCTCAGCAGCATTCGCAA
CCGGCACGACGACGTGGTGCGACTCATCGCCAAGGGCGTCATCGAGCTCA
AGGAGCACTGCGGGCGCGGCACGTCCGACCTGGAGATCCGCTCCTTTCTG
GACCGCTTCTACATGTCGCGCATTGGCATCCGCGTGCTGATGAGTCACCA
CCTGGCGCTCGGCGACCCGTCGCCGGGCATGGCCGGCGTCATCAATCGCT
TCTGCAGGCCGTCGCACCTCATTGAGCAGGCTGTGGTGGCCACGCGCTCG
CTGGCGTACCAGCACTACGGCGAGGCGCCGGACGTGCAGATCCGCGGCAA
CACGCAGCTGCAGTTTCCGTACATTGACTCGCACTTGTATCTGTGCCTGT
TCGAACTGCTCAAGAACAGCCTGAGGGCGACGGTGGAAACGCACCGCGAC
GCGGACGTGTTGCCGCCCGTGAGGTGCATCATAGCCGATGGCGTGGAGGA
CGTGACTGTGAAGATCAGTGACGAGGGCGGCGGCTTCCGGCGCTCCGAAA
TGAACCGAGTGTGGACGTATCTGTTCACCACGGCCAAGTTGCCTCCGAAA
CAACTTTTGGAAATGGAAGATCGATGCGACCGCACGAACCGACCGGACCC
GATTGCCGGCTTTGGCTACGGCTTGCCTCTCAGCCGGCTGTATGCCAGAT
ACTGGGGTGGCGAGCTTGCGCTGGCAAGCATGGAAGGCTACGGCACTGAT
GCGTACCTGCACCTGTCCAAACTGGGCGACAAGAAGGAGTGCCTCACCGC
TTGA
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