Gvermi3723.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3723.t1
Unique NameGvermi3723.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length378
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:4079151..4080377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38833.XP_003055683.1
PFAMsTAF,TAF6_C
Max annot lvl3041|Chlorophyta
KEGG koko:K03131
KEGG Pathwayko03022,ko05168,map03022,map05168
Evalue1.87e-12
EggNOG OGsCOG5095@1|root,KOG2549@2759|Eukaryota,37MFK@33090|Viridiplantae,34JVQ@3041|Chlorophyta
DescriptionTATA box binding protein associated factor
COG categoryK
BRITEko00000,ko00001,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3723Gvermi3723Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 4079151..4080377 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3723.t1Gvermi3723.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 4079151..4080377 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3723.t1.stop1Gvermi3723.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 4079151..4079153 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3723.t1.CDS1Gvermi3723.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4079151..4079832 -
Gvermi3723.t1.CDS2Gvermi3723.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4079926..4080377 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3723.t1.exon1Gvermi3723.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4079151..4079832 -
Gvermi3723.t1.exon2Gvermi3723.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4079926..4080377 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3723.t1.intron1Gvermi3723.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 4079833..4079925 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3723.t1.start1Gvermi3723.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 4080375..4080377 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3723.t1 ID=Gvermi3723.t1|Name=Gvermi3723.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=378bp
MPSKRAKRVRLPDDCVHTIAQTLGLSVTPDAAKMLAPAAEYQLRKLIHSS
KSYMRHAKRTRLTTTDVRLAHRAHFGKSLFGHPSSAAAAAAAAAPAFVPV
ANGIFVDADAMHTQSLRQLYTEPLPRKRHAALKASFVTTAAPLHRAPLPT
EAQRVPNVVQSMRRILASRDQRAVDAALRRMPRYREAHVRALVSLLQHAV
HRNATPSGDTRLLSNALRVLDALIARNRAPLDMFTDSALPIVLTCLLGTH
VGDGDRWQMREHAALTLGRWARATSDSHAVLRVVKTAVSCLTDAHAPLDT
ILGAALALGAVGADALRTHFVPHLRALLQSLRQRAQQAQDEAVRNEIEAR
VVRLSAGISKALSRLDSRRVSEASSVV*
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spliced messenger RNA

>Gvermi3723.t1 ID=Gvermi3723.t1|Name=Gvermi3723.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1134bp|location=Sequence derived from alignment at ScGOVlb_41:4079151..4080377- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTCCAAGCGCGCCAAGCGCGTGCGCCTGCCCGACGACTGCGTGCA
CACCATCGCGCAGACGCTGGGGCTCTCGGTGACGCCCGACGCGGCCAAAA
TGCTCGCGCCCGCCGCCGAGTACCAGCTGCGAAAGCTCATCCACAGCTCC
AAGAGCTACATGCGCCACGCCAAGCGCACCCGCCTCACCACCACGGACGT
GCGCCTGGCGCACAGGGCGCACTTTGGAAAGTCGCTGTTCGGCCACCCCA
GCAGCGCCGCCGCCGCCGCCGCCGCCGCCGCCCCCGCCTTTGTGCCGGTC
GCCAACGGCATCTTTGTCGACGCGGACGCCATGCACACGCAGTCGCTCAG
GCAGCTGTACACCGAGCCGCTGCCGCGCAAGCGCCACGCGGCGTTGAAAG
CCTCCTTCGTCACCACCGCCGCCCCGCTGCATCGCGCGCCGCTGCCGACC
GAAGCGCAGCGTGTGCCCAATGTGGTGCAGAGCATGCGCCGCATTCTCGC
CAGCCGCGACCAGCGCGCGGTGGACGCCGCGCTGCGCCGCATGCCGCGCT
ACCGCGAGGCGCACGTGCGCGCGCTCGTGTCGCTGCTGCAGCACGCGGTG
CACCGCAACGCCACGCCCAGCGGCGACACGCGACTTCTCAGCAACGCGCT
TCGCGTGCTGGACGCGCTCATTGCGCGCAACCGCGCGCCGCTGGACATGT
TCACGGACAGCGCGCTGCCCATCGTTCTGACGTGCCTGCTGGGCACGCAC
GTGGGCGACGGCGACCGGTGGCAAATGCGCGAGCACGCGGCGCTCACGCT
GGGGCGGTGGGCGCGCGCGACGTCGGACAGCCACGCCGTGCTCAGGGTGG
TGAAGACGGCCGTGTCGTGCCTGACCGACGCGCACGCGCCGCTCGACACC
ATCCTGGGCGCGGCCCTCGCGCTGGGTGCCGTGGGGGCGGACGCGCTGCG
CACGCACTTTGTGCCGCACCTGCGCGCGCTGTTGCAGTCTCTGCGCCAAC
GCGCGCAACAGGCGCAGGACGAGGCGGTGAGGAACGAAATCGAGGCGCGC
GTGGTGCGTCTGAGCGCGGGCATTTCGAAAGCGCTTTCGCGGCTGGACTC
GCGTCGCGTGAGCGAAGCGTCGAGCGTTGTATGA
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protein sequence of Gvermi3723.t1

>Gvermi3723.t1 ID=Gvermi3723.t1|Name=Gvermi3723.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=378bp
MPSKRAKRVRLPDDCVHTIAQTLGLSVTPDAAKMLAPAAEYQLRKLIHSS
KSYMRHAKRTRLTTTDVRLAHRAHFGKSLFGHPSSAAAAAAAAAPAFVPV
ANGIFVDADAMHTQSLRQLYTEPLPRKRHAALKASFVTTAAPLHRAPLPT
EAQRVPNVVQSMRRILASRDQRAVDAALRRMPRYREAHVRALVSLLQHAV
HRNATPSGDTRLLSNALRVLDALIARNRAPLDMFTDSALPIVLTCLLGTH
VGDGDRWQMREHAALTLGRWARATSDSHAVLRVVKTAVSCLTDAHAPLDT
ILGAALALGAVGADALRTHFVPHLRALLQSLRQRAQQAQDEAVRNEIEAR
VVRLSAGISKALSRLDSRRVSEASSVV*
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mRNA from alignment at ScGOVlb_41:4079151..4080377-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3723.t1 ID=Gvermi3723.t1|Name=Gvermi3723.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1227bp|location=Sequence derived from alignment at ScGOVlb_41:4079151..4080377- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGTCCAAGCGCGCCAAGCGCGTGCGCCTGCCCGACGACTGCGTGCA
CACCATCGCGCAGACGCTGGGGCTCTCGGTGACGCCCGACGCGGCCAAAA
TGCTCGCGCCCGCCGCCGAGTACCAGCTGCGAAAGCTCATCCACAGCTCC
AAGAGCTACATGCGCCACGCCAAGCGCACCCGCCTCACCACCACGGACGT
GCGCCTGGCGCACAGGGCGCACTTTGGAAAGTCGCTGTTCGGCCACCCCA
GCAGCGCCGCCGCCGCCGCCGCCGCCGCCGCCCCCGCCTTTGTGCCGGTC
GCCAACGGCATCTTTGTCGACGCGGACGCCATGCACACGCAGTCGCTCAG
GCAGCTGTACACCGAGCCGCTGCCGCGCAAGCGCCACGCGGCGTTGAAAG
CCTCCTTCGTCACCACCGCCGCCCCGCTGCATCGCGCGCCGCTGCCGACC
GAGTAAGTTGTGGTGCGCATGCGTTTTGCGTCTCGAGCCCCCCCGCCGCT
GCCAAAGCGCCGCGCTGACAAAACAGCCCAACGTTTGACGCGCAGAGCGC
AGCGTGTGCCCAATGTGGTGCAGAGCATGCGCCGCATTCTCGCCAGCCGC
GACCAGCGCGCGGTGGACGCCGCGCTGCGCCGCATGCCGCGCTACCGCGA
GGCGCACGTGCGCGCGCTCGTGTCGCTGCTGCAGCACGCGGTGCACCGCA
ACGCCACGCCCAGCGGCGACACGCGACTTCTCAGCAACGCGCTTCGCGTG
CTGGACGCGCTCATTGCGCGCAACCGCGCGCCGCTGGACATGTTCACGGA
CAGCGCGCTGCCCATCGTTCTGACGTGCCTGCTGGGCACGCACGTGGGCG
ACGGCGACCGGTGGCAAATGCGCGAGCACGCGGCGCTCACGCTGGGGCGG
TGGGCGCGCGCGACGTCGGACAGCCACGCCGTGCTCAGGGTGGTGAAGAC
GGCCGTGTCGTGCCTGACCGACGCGCACGCGCCGCTCGACACCATCCTGG
GCGCGGCCCTCGCGCTGGGTGCCGTGGGGGCGGACGCGCTGCGCACGCAC
TTTGTGCCGCACCTGCGCGCGCTGTTGCAGTCTCTGCGCCAACGCGCGCA
ACAGGCGCAGGACGAGGCGGTGAGGAACGAAATCGAGGCGCGCGTGGTGC
GTCTGAGCGCGGGCATTTCGAAAGCGCTTTCGCGGCTGGACTCGCGTCGC
GTGAGCGAAGCGTCGAGCGTTGTATGA
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Coding sequence (CDS) from alignment at ScGOVlb_41:4079151..4080377-

>Gvermi3723.t1 ID=Gvermi3723.t1|Name=Gvermi3723.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1134bp|location=Sequence derived from alignment at ScGOVlb_41:4079151..4080377- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGTCCAAGCGCGCCAAGCGCGTGCGCCTGCCCGACGACTGCGTGCA
CACCATCGCGCAGACGCTGGGGCTCTCGGTGACGCCCGACGCGGCCAAAA
TGCTCGCGCCCGCCGCCGAGTACCAGCTGCGAAAGCTCATCCACAGCTCC
AAGAGCTACATGCGCCACGCCAAGCGCACCCGCCTCACCACCACGGACGT
GCGCCTGGCGCACAGGGCGCACTTTGGAAAGTCGCTGTTCGGCCACCCCA
GCAGCGCCGCCGCCGCCGCCGCCGCCGCCGCCCCCGCCTTTGTGCCGGTC
GCCAACGGCATCTTTGTCGACGCGGACGCCATGCACACGCAGTCGCTCAG
GCAGCTGTACACCGAGCCGCTGCCGCGCAAGCGCCACGCGGCGTTGAAAG
CCTCCTTCGTCACCACCGCCGCCCCGCTGCATCGCGCGCCGCTGCCGACC
GAAGCGCAGCGTGTGCCCAATGTGGTGCAGAGCATGCGCCGCATTCTCGC
CAGCCGCGACCAGCGCGCGGTGGACGCCGCGCTGCGCCGCATGCCGCGCT
ACCGCGAGGCGCACGTGCGCGCGCTCGTGTCGCTGCTGCAGCACGCGGTG
CACCGCAACGCCACGCCCAGCGGCGACACGCGACTTCTCAGCAACGCGCT
TCGCGTGCTGGACGCGCTCATTGCGCGCAACCGCGCGCCGCTGGACATGT
TCACGGACAGCGCGCTGCCCATCGTTCTGACGTGCCTGCTGGGCACGCAC
GTGGGCGACGGCGACCGGTGGCAAATGCGCGAGCACGCGGCGCTCACGCT
GGGGCGGTGGGCGCGCGCGACGTCGGACAGCCACGCCGTGCTCAGGGTGG
TGAAGACGGCCGTGTCGTGCCTGACCGACGCGCACGCGCCGCTCGACACC
ATCCTGGGCGCGGCCCTCGCGCTGGGTGCCGTGGGGGCGGACGCGCTGCG
CACGCACTTTGTGCCGCACCTGCGCGCGCTGTTGCAGTCTCTGCGCCAAC
GCGCGCAACAGGCGCAGGACGAGGCGGTGAGGAACGAAATCGAGGCGCGC
GTGGTGCGTCTGAGCGCGGGCATTTCGAAAGCGCTTTCGCGGCTGGACTC
GCGTCGCGTGAGCGAAGCGTCGAGCGTTGTATGA
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