Gvermi3719.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3719.t1
Unique NameGvermi3719.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length177
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:4071467..4071997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36080.S2JY24
Preferred nameSSU72
PFAMsSsu72
Max annot lvl4751|Fungi
KEGG koko:K15544
KEGG Pathwayko03015,map03015
GOsGO:0001173,GO:0001174,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0004725,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005847,GO:0005849,GO:0006139,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006368,GO:0006369,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006464,GO:0006470,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0008420,GO:0009058,GO:0009059,GO:0009302,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010564,GO:0010639,GO:0010948,GO:0016070,GO:0016071,GO:0016074,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0023052,GO:0030846,GO:0030847,GO:0031123,GO:0031124,GO:0031323,GO:0031326,GO:0031554,GO:0031564,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035335,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043244,GO:0043412,GO:0043631,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045786,GO:0045839,GO:0045930,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051252,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060255,GO:0060623,GO:0065007,GO:0070013,GO:0070940,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0097659,GO:0098781,GO:0098787,GO:0098789,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902340,GO:1903379,GO:1903506,GO:1905213,GO:2000112,GO:2001141,GO:2001251
Evalue1.51e-46
EggNOG OGsCOG5211@1|root,KOG2424@2759|Eukaryota,38BQE@33154|Opisthokonta,3NZ1A@4751|Fungi,1GTXG@112252|Fungi incertae sedis
EC3.1.3.16
DescriptionSsu72-like protein
COG categoryK
BRITEko00000,ko00001,ko01000,ko03019,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3719Gvermi3719Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 4071467..4071997 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3719.t1.start1Gvermi3719.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 4071467..4071469 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3719.t1.CDS1Gvermi3719.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4071467..4071997 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3719.t1.exon1Gvermi3719.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4071467..4071997 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3719.t1.stop1Gvermi3719.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 4071995..4071997 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3719.t1Gvermi3719.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 4071467..4071997 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3719.t1 ID=Gvermi3719.t1|Name=Gvermi3719.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=177bp
MEAHRELALRGYNVRSYGTGSSVKLPGRTLMEPVVFPFNMPYEQMRAQLM
ERDAALYSSNGVLNMLDRNAKTKKAPEQWRDARERFDIIITFEERVFRSV
VDDFISNRSPSVFGPAYVLNLEIKDTHADAAAGAQLAVELVEAMGAEDNL
DMALYDVIGKLERKHNKDIMAVPVFC*
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spliced messenger RNA

>Gvermi3719.t1 ID=Gvermi3719.t1|Name=Gvermi3719.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=531bp|location=Sequence derived from alignment at ScGOVlb_41:4071467..4071997+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCGCACCGCGAACTAGCGCTACGCGGGTACAACGTGCGATCGTA
CGGGACTGGGAGCTCTGTGAAACTCCCCGGGCGCACGTTGATGGAGCCCG
TGGTGTTTCCGTTCAACATGCCCTACGAGCAGATGAGGGCGCAGCTGATG
GAGAGGGACGCGGCGCTGTACTCATCAAACGGGGTGTTGAACATGCTGGA
TCGCAACGCCAAAACAAAGAAGGCGCCAGAACAGTGGCGTGATGCTCGCG
AGCGCTTTGACATCATCATCACATTTGAGGAGCGCGTGTTTCGCAGCGTG
GTGGACGATTTCATCAGCAACCGAAGTCCTTCGGTGTTTGGCCCCGCGTA
CGTGTTGAACCTGGAGATCAAGGACACGCATGCCGATGCGGCAGCCGGCG
CTCAGTTGGCTGTGGAGCTGGTGGAGGCCATGGGCGCGGAGGACAACTTG
GATATGGCGCTGTACGACGTGATTGGCAAACTGGAGAGGAAACACAACAA
GGACATCATGGCGGTTCCCGTGTTTTGCTAA
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protein sequence of Gvermi3719.t1

>Gvermi3719.t1 ID=Gvermi3719.t1|Name=Gvermi3719.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=177bp
MEAHRELALRGYNVRSYGTGSSVKLPGRTLMEPVVFPFNMPYEQMRAQLM
ERDAALYSSNGVLNMLDRNAKTKKAPEQWRDARERFDIIITFEERVFRSV
VDDFISNRSPSVFGPAYVLNLEIKDTHADAAAGAQLAVELVEAMGAEDNL
DMALYDVIGKLERKHNKDIMAVPVFC*
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mRNA from alignment at ScGOVlb_41:4071467..4071997+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3719.t1 ID=Gvermi3719.t1|Name=Gvermi3719.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=531bp|location=Sequence derived from alignment at ScGOVlb_41:4071467..4071997+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAGCGCACCGCGAACTAGCGCTACGCGGGTACAACGTGCGATCGTA
CGGGACTGGGAGCTCTGTGAAACTCCCCGGGCGCACGTTGATGGAGCCCG
TGGTGTTTCCGTTCAACATGCCCTACGAGCAGATGAGGGCGCAGCTGATG
GAGAGGGACGCGGCGCTGTACTCATCAAACGGGGTGTTGAACATGCTGGA
TCGCAACGCCAAAACAAAGAAGGCGCCAGAACAGTGGCGTGATGCTCGCG
AGCGCTTTGACATCATCATCACATTTGAGGAGCGCGTGTTTCGCAGCGTG
GTGGACGATTTCATCAGCAACCGAAGTCCTTCGGTGTTTGGCCCCGCGTA
CGTGTTGAACCTGGAGATCAAGGACACGCATGCCGATGCGGCAGCCGGCG
CTCAGTTGGCTGTGGAGCTGGTGGAGGCCATGGGCGCGGAGGACAACTTG
GATATGGCGCTGTACGACGTGATTGGCAAACTGGAGAGGAAACACAACAA
GGACATCATGGCGGTTCCCGTGTTTTGCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_41:4071467..4071997+

>Gvermi3719.t1 ID=Gvermi3719.t1|Name=Gvermi3719.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=531bp|location=Sequence derived from alignment at ScGOVlb_41:4071467..4071997+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAGCGCACCGCGAACTAGCGCTACGCGGGTACAACGTGCGATCGTA
CGGGACTGGGAGCTCTGTGAAACTCCCCGGGCGCACGTTGATGGAGCCCG
TGGTGTTTCCGTTCAACATGCCCTACGAGCAGATGAGGGCGCAGCTGATG
GAGAGGGACGCGGCGCTGTACTCATCAAACGGGGTGTTGAACATGCTGGA
TCGCAACGCCAAAACAAAGAAGGCGCCAGAACAGTGGCGTGATGCTCGCG
AGCGCTTTGACATCATCATCACATTTGAGGAGCGCGTGTTTCGCAGCGTG
GTGGACGATTTCATCAGCAACCGAAGTCCTTCGGTGTTTGGCCCCGCGTA
CGTGTTGAACCTGGAGATCAAGGACACGCATGCCGATGCGGCAGCCGGCG
CTCAGTTGGCTGTGGAGCTGGTGGAGGCCATGGGCGCGGAGGACAACTTG
GATATGGCGCTGTACGACGTGATTGGCAAACTGGAGAGGAAACACAACAA
GGACATCATGGCGGTTCCCGTGTTTTGCTAA
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