Gvermi3718.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3718.t1
Unique NameGvermi3718.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length513
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:4068856..4070394 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S54_134V6.1
PFAMsTAF,TAF6_C
Max annot lvl35493|Streptophyta
KEGG koko:K03131
KEGG Pathwayko03022,ko05168,map03022,map05168
GOsGO:0000123,GO:0000124,GO:0000228,GO:0000428,GO:0000785,GO:0000790,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005694,GO:0006139,GO:0006325,GO:0006338,GO:0006351,GO:0006352,GO:0006366,GO:0006367,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016569,GO:0016570,GO:0016573,GO:0016591,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019438,GO:0019538,GO:0030880,GO:0031248,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044798,GO:0046483,GO:0051276,GO:0055029,GO:0061695,GO:0070013,GO:0070461,GO:0071704,GO:0071840,GO:0090304,GO:0090575,GO:0097659,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902493,GO:1902494,GO:1905368,GO:1990234
Evalue8.28e-88
EggNOG OGsCOG5095@1|root,KOG2549@2759|Eukaryota,37MFK@33090|Viridiplantae,3G92R@35493|Streptophyta
DescriptionTranscription initiation factor TFIID subunit
COG categoryK
BRITEko00000,ko00001,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3718Gvermi3718Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 4068856..4070394 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3718.t1.stop1Gvermi3718.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 4068856..4068858 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3718.t1.CDS1Gvermi3718.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4068856..4070394 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3718.t1.exon1Gvermi3718.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4068856..4070394 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3718.t1.start1Gvermi3718.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 4070392..4070394 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3718.t1Gvermi3718.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 4068856..4070394 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3718.t1 ID=Gvermi3718.t1|Name=Gvermi3718.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=513bp
MDPSALAPKDQALKRTKPPSANVVPHEKLRVDTEVIRVIGQSIPSLAPFT
DSAAGTLALDIEYRIREIVQDAVKFMKHSKRNNLTTNDINAALRLRNVAP
IVGFSDPKGNSHKIKGTGLTDRLAYTKGPSQEANGPQAPQFIAVDGSDDL
FFVPDRERTVKSVIESDMPPVPLDVSLTKHWLAVAGKQPSIPQNPTRKRK
TTHGEDDDMQLVAKKQKVSCEVKPLVKHELSRELQLYLEQITTAVQGDDT
KHLEQCLYAVAHEKGIAELLPYFTQFVFKCVTKCNNLPLMFSCMRLVNAI
LDNDVFDLRLYLQQVLPAVLTCIVGKRFSGNPRDNHWALRDYTTTVLKKI
CDQYGQQYPDIQPRITKTCASALDNPKRPLTTHYGAIVGLAALGRRVLER
HLLPRLERKSYISMVEKVVKTANTKPVRRNEAYRVFGALFWAVSMARGTR
DVSSKPSEVDVQFKYFVDFFPSAETVFKAGQMELRDNFYPHRHGKTDAEL
TAALLEERKGKR*
back to top

spliced messenger RNA

>Gvermi3718.t1 ID=Gvermi3718.t1|Name=Gvermi3718.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1539bp|location=Sequence derived from alignment at ScGOVlb_41:4068856..4070394- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCCCTCTGCGCTGGCGCCCAAAGACCAGGCGCTGAAGCGAACCAA
ACCTCCAAGCGCGAATGTTGTGCCCCATGAAAAACTGCGTGTCGATACTG
AAGTCATTCGCGTCATCGGTCAGTCTATTCCGAGTCTGGCGCCTTTCACA
GATTCGGCCGCAGGCACGTTGGCACTTGACATCGAATATCGCATCCGGGA
GATTGTTCAAGACGCTGTCAAATTCATGAAGCATTCCAAGCGCAACAATC
TAACTACCAATGACATCAACGCTGCTCTCCGTTTGCGAAACGTCGCCCCC
ATCGTCGGCTTCAGTGATCCCAAGGGAAACTCCCACAAAATCAAAGGCAC
AGGACTGACAGACCGCCTGGCGTACACCAAGGGCCCGTCTCAGGAAGCGA
ACGGGCCACAAGCCCCTCAGTTCATTGCTGTGGATGGAAGCGATGATTTG
TTCTTTGTGCCCGACCGAGAAAGGACGGTGAAATCCGTCATCGAAAGCGA
CATGCCACCCGTGCCTCTGGACGTCAGTCTCACCAAGCATTGGCTGGCGG
TGGCCGGCAAACAGCCTTCGATCCCCCAGAACCCCACAAGAAAGCGCAAG
ACCACGCATGGAGAAGACGACGACATGCAACTAGTCGCGAAAAAGCAGAA
GGTTTCATGCGAAGTCAAACCTCTAGTGAAGCATGAACTGAGCCGAGAAT
TGCAACTTTACCTCGAGCAGATCACCACTGCCGTACAGGGGGATGACACA
AAGCATTTGGAGCAGTGTTTGTACGCGGTGGCTCACGAAAAAGGGATTGC
CGAGTTGCTCCCGTACTTTACGCAGTTCGTGTTCAAATGCGTTACCAAGT
GCAACAATCTACCTCTAATGTTCTCGTGTATGCGACTGGTGAATGCCATT
CTGGATAATGACGTCTTTGACTTGAGACTGTACCTGCAACAAGTCTTACC
AGCAGTTCTCACTTGCATAGTGGGAAAACGCTTTTCAGGCAACCCAAGGG
ATAATCACTGGGCGCTCCGAGATTACACAACTACGGTCTTGAAGAAGATA
TGTGATCAATATGGTCAACAGTATCCGGACATCCAGCCGCGCATTACCAA
AACATGCGCCTCGGCGCTTGACAACCCAAAACGACCGCTGACAACTCACT
ATGGAGCTATTGTCGGTCTAGCAGCGCTGGGGCGAAGAGTCTTGGAACGG
CATTTGCTTCCTCGCTTGGAACGCAAGTCGTACATCTCAATGGTGGAAAA
GGTTGTGAAAACCGCCAATACCAAGCCAGTGCGAAGGAATGAGGCGTACA
GGGTGTTTGGGGCGTTGTTTTGGGCCGTATCAATGGCACGGGGTACGAGG
GACGTTTCATCAAAGCCGTCAGAAGTAGACGTCCAGTTCAAGTACTTTGT
GGACTTTTTCCCCTCTGCGGAGACAGTGTTCAAGGCAGGACAAATGGAGT
TGCGTGATAACTTTTACCCACATCGTCATGGAAAAACTGACGCAGAACTT
ACAGCTGCTCTTCTTGAAGAGAGGAAAGGTAAACGGTAG
back to top

protein sequence of Gvermi3718.t1

>Gvermi3718.t1 ID=Gvermi3718.t1|Name=Gvermi3718.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=513bp
MDPSALAPKDQALKRTKPPSANVVPHEKLRVDTEVIRVIGQSIPSLAPFT
DSAAGTLALDIEYRIREIVQDAVKFMKHSKRNNLTTNDINAALRLRNVAP
IVGFSDPKGNSHKIKGTGLTDRLAYTKGPSQEANGPQAPQFIAVDGSDDL
FFVPDRERTVKSVIESDMPPVPLDVSLTKHWLAVAGKQPSIPQNPTRKRK
TTHGEDDDMQLVAKKQKVSCEVKPLVKHELSRELQLYLEQITTAVQGDDT
KHLEQCLYAVAHEKGIAELLPYFTQFVFKCVTKCNNLPLMFSCMRLVNAI
LDNDVFDLRLYLQQVLPAVLTCIVGKRFSGNPRDNHWALRDYTTTVLKKI
CDQYGQQYPDIQPRITKTCASALDNPKRPLTTHYGAIVGLAALGRRVLER
HLLPRLERKSYISMVEKVVKTANTKPVRRNEAYRVFGALFWAVSMARGTR
DVSSKPSEVDVQFKYFVDFFPSAETVFKAGQMELRDNFYPHRHGKTDAEL
TAALLEERKGKR*
back to top

mRNA from alignment at ScGOVlb_41:4068856..4070394-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3718.t1 ID=Gvermi3718.t1|Name=Gvermi3718.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1539bp|location=Sequence derived from alignment at ScGOVlb_41:4068856..4070394- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACCCCTCTGCGCTGGCGCCCAAAGACCAGGCGCTGAAGCGAACCAA
ACCTCCAAGCGCGAATGTTGTGCCCCATGAAAAACTGCGTGTCGATACTG
AAGTCATTCGCGTCATCGGTCAGTCTATTCCGAGTCTGGCGCCTTTCACA
GATTCGGCCGCAGGCACGTTGGCACTTGACATCGAATATCGCATCCGGGA
GATTGTTCAAGACGCTGTCAAATTCATGAAGCATTCCAAGCGCAACAATC
TAACTACCAATGACATCAACGCTGCTCTCCGTTTGCGAAACGTCGCCCCC
ATCGTCGGCTTCAGTGATCCCAAGGGAAACTCCCACAAAATCAAAGGCAC
AGGACTGACAGACCGCCTGGCGTACACCAAGGGCCCGTCTCAGGAAGCGA
ACGGGCCACAAGCCCCTCAGTTCATTGCTGTGGATGGAAGCGATGATTTG
TTCTTTGTGCCCGACCGAGAAAGGACGGTGAAATCCGTCATCGAAAGCGA
CATGCCACCCGTGCCTCTGGACGTCAGTCTCACCAAGCATTGGCTGGCGG
TGGCCGGCAAACAGCCTTCGATCCCCCAGAACCCCACAAGAAAGCGCAAG
ACCACGCATGGAGAAGACGACGACATGCAACTAGTCGCGAAAAAGCAGAA
GGTTTCATGCGAAGTCAAACCTCTAGTGAAGCATGAACTGAGCCGAGAAT
TGCAACTTTACCTCGAGCAGATCACCACTGCCGTACAGGGGGATGACACA
AAGCATTTGGAGCAGTGTTTGTACGCGGTGGCTCACGAAAAAGGGATTGC
CGAGTTGCTCCCGTACTTTACGCAGTTCGTGTTCAAATGCGTTACCAAGT
GCAACAATCTACCTCTAATGTTCTCGTGTATGCGACTGGTGAATGCCATT
CTGGATAATGACGTCTTTGACTTGAGACTGTACCTGCAACAAGTCTTACC
AGCAGTTCTCACTTGCATAGTGGGAAAACGCTTTTCAGGCAACCCAAGGG
ATAATCACTGGGCGCTCCGAGATTACACAACTACGGTCTTGAAGAAGATA
TGTGATCAATATGGTCAACAGTATCCGGACATCCAGCCGCGCATTACCAA
AACATGCGCCTCGGCGCTTGACAACCCAAAACGACCGCTGACAACTCACT
ATGGAGCTATTGTCGGTCTAGCAGCGCTGGGGCGAAGAGTCTTGGAACGG
CATTTGCTTCCTCGCTTGGAACGCAAGTCGTACATCTCAATGGTGGAAAA
GGTTGTGAAAACCGCCAATACCAAGCCAGTGCGAAGGAATGAGGCGTACA
GGGTGTTTGGGGCGTTGTTTTGGGCCGTATCAATGGCACGGGGTACGAGG
GACGTTTCATCAAAGCCGTCAGAAGTAGACGTCCAGTTCAAGTACTTTGT
GGACTTTTTCCCCTCTGCGGAGACAGTGTTCAAGGCAGGACAAATGGAGT
TGCGTGATAACTTTTACCCACATCGTCATGGAAAAACTGACGCAGAACTT
ACAGCTGCTCTTCTTGAAGAGAGGAAAGGTAAACGGTAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_41:4068856..4070394-

>Gvermi3718.t1 ID=Gvermi3718.t1|Name=Gvermi3718.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1539bp|location=Sequence derived from alignment at ScGOVlb_41:4068856..4070394- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACCCCTCTGCGCTGGCGCCCAAAGACCAGGCGCTGAAGCGAACCAA
ACCTCCAAGCGCGAATGTTGTGCCCCATGAAAAACTGCGTGTCGATACTG
AAGTCATTCGCGTCATCGGTCAGTCTATTCCGAGTCTGGCGCCTTTCACA
GATTCGGCCGCAGGCACGTTGGCACTTGACATCGAATATCGCATCCGGGA
GATTGTTCAAGACGCTGTCAAATTCATGAAGCATTCCAAGCGCAACAATC
TAACTACCAATGACATCAACGCTGCTCTCCGTTTGCGAAACGTCGCCCCC
ATCGTCGGCTTCAGTGATCCCAAGGGAAACTCCCACAAAATCAAAGGCAC
AGGACTGACAGACCGCCTGGCGTACACCAAGGGCCCGTCTCAGGAAGCGA
ACGGGCCACAAGCCCCTCAGTTCATTGCTGTGGATGGAAGCGATGATTTG
TTCTTTGTGCCCGACCGAGAAAGGACGGTGAAATCCGTCATCGAAAGCGA
CATGCCACCCGTGCCTCTGGACGTCAGTCTCACCAAGCATTGGCTGGCGG
TGGCCGGCAAACAGCCTTCGATCCCCCAGAACCCCACAAGAAAGCGCAAG
ACCACGCATGGAGAAGACGACGACATGCAACTAGTCGCGAAAAAGCAGAA
GGTTTCATGCGAAGTCAAACCTCTAGTGAAGCATGAACTGAGCCGAGAAT
TGCAACTTTACCTCGAGCAGATCACCACTGCCGTACAGGGGGATGACACA
AAGCATTTGGAGCAGTGTTTGTACGCGGTGGCTCACGAAAAAGGGATTGC
CGAGTTGCTCCCGTACTTTACGCAGTTCGTGTTCAAATGCGTTACCAAGT
GCAACAATCTACCTCTAATGTTCTCGTGTATGCGACTGGTGAATGCCATT
CTGGATAATGACGTCTTTGACTTGAGACTGTACCTGCAACAAGTCTTACC
AGCAGTTCTCACTTGCATAGTGGGAAAACGCTTTTCAGGCAACCCAAGGG
ATAATCACTGGGCGCTCCGAGATTACACAACTACGGTCTTGAAGAAGATA
TGTGATCAATATGGTCAACAGTATCCGGACATCCAGCCGCGCATTACCAA
AACATGCGCCTCGGCGCTTGACAACCCAAAACGACCGCTGACAACTCACT
ATGGAGCTATTGTCGGTCTAGCAGCGCTGGGGCGAAGAGTCTTGGAACGG
CATTTGCTTCCTCGCTTGGAACGCAAGTCGTACATCTCAATGGTGGAAAA
GGTTGTGAAAACCGCCAATACCAAGCCAGTGCGAAGGAATGAGGCGTACA
GGGTGTTTGGGGCGTTGTTTTGGGCCGTATCAATGGCACGGGGTACGAGG
GACGTTTCATCAAAGCCGTCAGAAGTAGACGTCCAGTTCAAGTACTTTGT
GGACTTTTTCCCCTCTGCGGAGACAGTGTTCAAGGCAGGACAAATGGAGT
TGCGTGATAACTTTTACCCACATCGTCATGGAAAAACTGACGCAGAACTT
ACAGCTGCTCTTCTTGAAGAGAGGAAAGGTAAACGGTAG
back to top