Gvermi3716.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3716.t1
Unique NameGvermi3716.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length211
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:4065091..4065723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703607.1
Preferred nameRANBP1
PFAMsRan_BP1
Max annot lvl2759|Eukaryota
KEGG koko:K15306,ko:K20282
KEGG Pathwayko05166,ko05203,map05166,map05203
GOsGO:0000060,GO:0000082,GO:0000166,GO:0000226,GO:0000278,GO:0001101,GO:0001882,GO:0001883,GO:0003674,GO:0005092,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006403,GO:0006405,GO:0006508,GO:0006511,GO:0006606,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007088,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0007275,GO:0007346,GO:0007399,GO:0008104,GO:0008150,GO:0008152,GO:0008536,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010564,GO:0010638,GO:0010720,GO:0010975,GO:0010976,GO:0012505,GO:0014070,GO:0015031,GO:0015630,GO:0015833,GO:0015931,GO:0016032,GO:0016043,GO:0017016,GO:0017038,GO:0017076,GO:0019001,GO:0019538,GO:0019899,GO:0019941,GO:0022008,GO:0022402,GO:0023052,GO:0030154,GO:0030163,GO:0030234,GO:0030424,GO:0030695,GO:0031267,GO:0031291,GO:0031344,GO:0031346,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032838,GO:0032886,GO:0033036,GO:0033043,GO:0033267,GO:0033365,GO:0033993,GO:0034504,GO:0034613,GO:0035556,GO:0035639,GO:0036094,GO:0042221,GO:0042886,GO:0042995,GO:0043005,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045184,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045787,GO:0045840,GO:0045931,GO:0046602,GO:0046604,GO:0046605,GO:0046607,GO:0046677,GO:0046907,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050767,GO:0050769,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051020,GO:0051094,GO:0051128,GO:0051130,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051236,GO:0051239,GO:0051240,GO:0051493,GO:0051495,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051785,GO:0051960,GO:0051962,GO:0060284,GO:0060589,GO:0065007,GO:0065009,GO:0070507,GO:0070542,GO:0070727,GO:0070887,GO:0071229,GO:0071236,GO:0071310,GO:0071396,GO:0071398,GO:0071407,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072750,GO:0090068,GO:0097159,GO:0097367,GO:0097458,GO:0098772,GO:0099568,GO:0120025,GO:0120035,GO:0120038,GO:0120111,GO:1901265,GO:1901344,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1901701,GO:1903047,GO:1904115,GO:2000026
Evalue1.58e-55
EggNOG OGsCOG5171@1|root,KOG0864@2759|Eukaryota
DescriptionRan GTPase binding
COG categoryU
BRITEko00000,ko00001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3716Gvermi3716Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 4065091..4065723 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3716.t1.stop1Gvermi3716.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 4065091..4065093 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3716.t1.CDS1Gvermi3716.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4065091..4065723 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3716.t1.exon1Gvermi3716.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4065091..4065723 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3716.t1.start1Gvermi3716.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 4065721..4065723 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3716.t1Gvermi3716.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 4065091..4065723 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3716.t1 ID=Gvermi3716.t1|Name=Gvermi3716.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=211bp
MTNPVVEIAPASNSAAEPETTLAADEDCSKDYEPVVRLEQVETKTGEEDE
EMLFKMRSKLFRFSKELKEWKERGTGDVRILKHSKTNKIRLLMRREKTLK
ICMNHYVNPNTELRENVGSERSWVWHAIDYADDERDEALLAIRFRDSNDA
KAFKDAYDSARQHMASLRSQSAGADQTAEGNGSVSAETKAEDKPADTSAT
KEPAETTSTS*
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spliced messenger RNA

>Gvermi3716.t1 ID=Gvermi3716.t1|Name=Gvermi3716.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=633bp|location=Sequence derived from alignment at ScGOVlb_41:4065091..4065723- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCAACCCGGTCGTGGAGATTGCGCCCGCGTCCAATTCCGCCGCCGA
GCCCGAAACCACGTTGGCCGCCGATGAGGACTGCTCCAAGGACTACGAGC
CCGTCGTCAGACTCGAGCAGGTCGAGACCAAGACCGGCGAGGAAGACGAG
GAGATGCTGTTCAAGATGCGATCAAAACTGTTCCGATTCAGCAAGGAGCT
CAAGGAGTGGAAGGAGAGGGGAACCGGCGATGTTCGCATCCTCAAACACA
GCAAAACTAACAAGATTCGTTTACTCATGCGTCGCGAAAAGACGCTCAAG
ATCTGCATGAACCACTACGTCAACCCCAACACCGAGCTCAGGGAGAACGT
CGGCTCCGAACGATCGTGGGTGTGGCACGCCATCGATTACGCCGACGACG
AGCGCGACGAGGCGCTGCTTGCAATTCGCTTCCGTGATTCCAACGACGCA
AAGGCCTTCAAGGATGCGTACGACAGCGCTCGCCAGCACATGGCCTCCCT
TCGCTCCCAGAGTGCCGGCGCAGATCAAACCGCCGAAGGCAACGGCTCGG
TGTCTGCAGAAACCAAAGCCGAAGACAAGCCTGCGGACACAAGCGCCACC
AAGGAACCCGCGGAAACCACCTCCACGTCGTAA
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protein sequence of Gvermi3716.t1

>Gvermi3716.t1 ID=Gvermi3716.t1|Name=Gvermi3716.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=211bp
MTNPVVEIAPASNSAAEPETTLAADEDCSKDYEPVVRLEQVETKTGEEDE
EMLFKMRSKLFRFSKELKEWKERGTGDVRILKHSKTNKIRLLMRREKTLK
ICMNHYVNPNTELRENVGSERSWVWHAIDYADDERDEALLAIRFRDSNDA
KAFKDAYDSARQHMASLRSQSAGADQTAEGNGSVSAETKAEDKPADTSAT
KEPAETTSTS*
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mRNA from alignment at ScGOVlb_41:4065091..4065723-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3716.t1 ID=Gvermi3716.t1|Name=Gvermi3716.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=633bp|location=Sequence derived from alignment at ScGOVlb_41:4065091..4065723- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCAACCCGGTCGTGGAGATTGCGCCCGCGTCCAATTCCGCCGCCGA
GCCCGAAACCACGTTGGCCGCCGATGAGGACTGCTCCAAGGACTACGAGC
CCGTCGTCAGACTCGAGCAGGTCGAGACCAAGACCGGCGAGGAAGACGAG
GAGATGCTGTTCAAGATGCGATCAAAACTGTTCCGATTCAGCAAGGAGCT
CAAGGAGTGGAAGGAGAGGGGAACCGGCGATGTTCGCATCCTCAAACACA
GCAAAACTAACAAGATTCGTTTACTCATGCGTCGCGAAAAGACGCTCAAG
ATCTGCATGAACCACTACGTCAACCCCAACACCGAGCTCAGGGAGAACGT
CGGCTCCGAACGATCGTGGGTGTGGCACGCCATCGATTACGCCGACGACG
AGCGCGACGAGGCGCTGCTTGCAATTCGCTTCCGTGATTCCAACGACGCA
AAGGCCTTCAAGGATGCGTACGACAGCGCTCGCCAGCACATGGCCTCCCT
TCGCTCCCAGAGTGCCGGCGCAGATCAAACCGCCGAAGGCAACGGCTCGG
TGTCTGCAGAAACCAAAGCCGAAGACAAGCCTGCGGACACAAGCGCCACC
AAGGAACCCGCGGAAACCACCTCCACGTCGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_41:4065091..4065723-

>Gvermi3716.t1 ID=Gvermi3716.t1|Name=Gvermi3716.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=633bp|location=Sequence derived from alignment at ScGOVlb_41:4065091..4065723- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCAACCCGGTCGTGGAGATTGCGCCCGCGTCCAATTCCGCCGCCGA
GCCCGAAACCACGTTGGCCGCCGATGAGGACTGCTCCAAGGACTACGAGC
CCGTCGTCAGACTCGAGCAGGTCGAGACCAAGACCGGCGAGGAAGACGAG
GAGATGCTGTTCAAGATGCGATCAAAACTGTTCCGATTCAGCAAGGAGCT
CAAGGAGTGGAAGGAGAGGGGAACCGGCGATGTTCGCATCCTCAAACACA
GCAAAACTAACAAGATTCGTTTACTCATGCGTCGCGAAAAGACGCTCAAG
ATCTGCATGAACCACTACGTCAACCCCAACACCGAGCTCAGGGAGAACGT
CGGCTCCGAACGATCGTGGGTGTGGCACGCCATCGATTACGCCGACGACG
AGCGCGACGAGGCGCTGCTTGCAATTCGCTTCCGTGATTCCAACGACGCA
AAGGCCTTCAAGGATGCGTACGACAGCGCTCGCCAGCACATGGCCTCCCT
TCGCTCCCAGAGTGCCGGCGCAGATCAAACCGCCGAAGGCAACGGCTCGG
TGTCTGCAGAAACCAAAGCCGAAGACAAGCCTGCGGACACAAGCGCCACC
AAGGAACCCGCGGAAACCACCTCCACGTCGTAA
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