Gvermi3711.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3711.t1
Unique NameGvermi3711.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length244
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:4057976..4058707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109871.XP_006681151.1
PFAMsRrp15p
Max annot lvl2759|Eukaryota
Evalue1.18e-06
EggNOG OGsKOG2974@1|root,2SD79@2759|Eukaryota
DescriptionRrp15p
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3711Gvermi3711Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 4057976..4058707 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3711.t1.stop1Gvermi3711.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 4057976..4057978 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3711.t1.CDS1Gvermi3711.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4057976..4058707 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3711.t1.exon1Gvermi3711.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4057976..4058707 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3711.t1.start1Gvermi3711.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 4058705..4058707 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3711.t1Gvermi3711.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 4057976..4058707 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3711.t1 ID=Gvermi3711.t1|Name=Gvermi3711.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=244bp
MAEREVSKESVRDEKPSILSEGASVALGNVFKRLVGSETRHKSTELSKKR
PKTTILGQNEQVEKALAEQAEERKRIKRAKKAKAAFENNARVIPDAATGA
ALEKELLAIATKGAVALFNAVATAQKSLEEKRDAKKGKKGPPVSRESFMA
MMKAGLKNNAPNTVQNDGGSEAGHEEDSDDPHVARSKANWLKDDYLTKGS
KTLKDWDRRADEQAADDDSDSSGDSQSKDDDVSSDASSDGSTS*
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spliced messenger RNA

>Gvermi3711.t1 ID=Gvermi3711.t1|Name=Gvermi3711.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=732bp|location=Sequence derived from alignment at ScGOVlb_41:4057976..4058707- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGAACGTGAAGTGTCCAAGGAAAGCGTTCGTGATGAAAAACCTTC
CATTCTTAGTGAAGGTGCCAGCGTTGCACTTGGGAATGTTTTCAAAAGAT
TAGTTGGCTCCGAAACACGGCACAAAAGCACAGAGCTGAGCAAAAAGAGA
CCAAAAACCACAATCTTGGGACAGAATGAACAAGTTGAAAAAGCCTTGGC
GGAGCAGGCTGAAGAACGAAAGCGAATCAAACGAGCAAAAAAAGCTAAAG
CTGCATTTGAAAACAACGCTCGGGTCATCCCCGATGCAGCTACTGGTGCT
GCGTTAGAAAAAGAACTGCTAGCAATAGCTACAAAAGGAGCTGTAGCGCT
TTTCAATGCGGTTGCTACGGCTCAGAAGTCCTTGGAGGAAAAAAGAGATG
CTAAAAAAGGGAAAAAAGGCCCTCCAGTAAGCAGAGAGAGCTTCATGGCA
ATGATGAAGGCAGGTTTAAAGAACAATGCTCCCAATACCGTTCAGAATGA
TGGCGGCAGTGAAGCTGGTCATGAAGAAGACAGTGATGATCCACACGTTG
CCCGTTCGAAGGCGAATTGGTTGAAGGACGATTACCTGACGAAAGGTTCG
AAAACTCTTAAAGATTGGGATAGGAGAGCAGATGAGCAAGCTGCTGACGA
CGATTCCGATTCGAGTGGGGACAGTCAGAGCAAAGACGATGATGTATCAA
GCGATGCCTCAAGCGATGGATCTACTTCTTGA
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protein sequence of Gvermi3711.t1

>Gvermi3711.t1 ID=Gvermi3711.t1|Name=Gvermi3711.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=244bp
MAEREVSKESVRDEKPSILSEGASVALGNVFKRLVGSETRHKSTELSKKR
PKTTILGQNEQVEKALAEQAEERKRIKRAKKAKAAFENNARVIPDAATGA
ALEKELLAIATKGAVALFNAVATAQKSLEEKRDAKKGKKGPPVSRESFMA
MMKAGLKNNAPNTVQNDGGSEAGHEEDSDDPHVARSKANWLKDDYLTKGS
KTLKDWDRRADEQAADDDSDSSGDSQSKDDDVSSDASSDGSTS*
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mRNA from alignment at ScGOVlb_41:4057976..4058707-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3711.t1 ID=Gvermi3711.t1|Name=Gvermi3711.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=732bp|location=Sequence derived from alignment at ScGOVlb_41:4057976..4058707- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCAGAACGTGAAGTGTCCAAGGAAAGCGTTCGTGATGAAAAACCTTC
CATTCTTAGTGAAGGTGCCAGCGTTGCACTTGGGAATGTTTTCAAAAGAT
TAGTTGGCTCCGAAACACGGCACAAAAGCACAGAGCTGAGCAAAAAGAGA
CCAAAAACCACAATCTTGGGACAGAATGAACAAGTTGAAAAAGCCTTGGC
GGAGCAGGCTGAAGAACGAAAGCGAATCAAACGAGCAAAAAAAGCTAAAG
CTGCATTTGAAAACAACGCTCGGGTCATCCCCGATGCAGCTACTGGTGCT
GCGTTAGAAAAAGAACTGCTAGCAATAGCTACAAAAGGAGCTGTAGCGCT
TTTCAATGCGGTTGCTACGGCTCAGAAGTCCTTGGAGGAAAAAAGAGATG
CTAAAAAAGGGAAAAAAGGCCCTCCAGTAAGCAGAGAGAGCTTCATGGCA
ATGATGAAGGCAGGTTTAAAGAACAATGCTCCCAATACCGTTCAGAATGA
TGGCGGCAGTGAAGCTGGTCATGAAGAAGACAGTGATGATCCACACGTTG
CCCGTTCGAAGGCGAATTGGTTGAAGGACGATTACCTGACGAAAGGTTCG
AAAACTCTTAAAGATTGGGATAGGAGAGCAGATGAGCAAGCTGCTGACGA
CGATTCCGATTCGAGTGGGGACAGTCAGAGCAAAGACGATGATGTATCAA
GCGATGCCTCAAGCGATGGATCTACTTCTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_41:4057976..4058707-

>Gvermi3711.t1 ID=Gvermi3711.t1|Name=Gvermi3711.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=732bp|location=Sequence derived from alignment at ScGOVlb_41:4057976..4058707- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCAGAACGTGAAGTGTCCAAGGAAAGCGTTCGTGATGAAAAACCTTC
CATTCTTAGTGAAGGTGCCAGCGTTGCACTTGGGAATGTTTTCAAAAGAT
TAGTTGGCTCCGAAACACGGCACAAAAGCACAGAGCTGAGCAAAAAGAGA
CCAAAAACCACAATCTTGGGACAGAATGAACAAGTTGAAAAAGCCTTGGC
GGAGCAGGCTGAAGAACGAAAGCGAATCAAACGAGCAAAAAAAGCTAAAG
CTGCATTTGAAAACAACGCTCGGGTCATCCCCGATGCAGCTACTGGTGCT
GCGTTAGAAAAAGAACTGCTAGCAATAGCTACAAAAGGAGCTGTAGCGCT
TTTCAATGCGGTTGCTACGGCTCAGAAGTCCTTGGAGGAAAAAAGAGATG
CTAAAAAAGGGAAAAAAGGCCCTCCAGTAAGCAGAGAGAGCTTCATGGCA
ATGATGAAGGCAGGTTTAAAGAACAATGCTCCCAATACCGTTCAGAATGA
TGGCGGCAGTGAAGCTGGTCATGAAGAAGACAGTGATGATCCACACGTTG
CCCGTTCGAAGGCGAATTGGTTGAAGGACGATTACCTGACGAAAGGTTCG
AAAACTCTTAAAGATTGGGATAGGAGAGCAGATGAGCAAGCTGCTGACGA
CGATTCCGATTCGAGTGGGGACAGTCAGAGCAAAGACGATGATGTATCAA
GCGATGCCTCAAGCGATGGATCTACTTCTTGA
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