Gvermi3699.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3699.t1
Unique NameGvermi3699.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length346
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:4035232..4036269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog35128.Thaps24494
Max annot lvl2836|Bacillariophyta
Evalue2.47e-11
EggNOG OGs2C4TE@1|root,2RWDJ@2759|Eukaryota,2XDNA@2836|Bacillariophyta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3699Gvermi3699Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 4035232..4036269 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3699.t1.stop1Gvermi3699.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 4035232..4035234 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3699.t1.CDS1Gvermi3699.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4035232..4036269 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3699.t1.exon1Gvermi3699.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4035232..4036269 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3699.t1.start1Gvermi3699.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 4036267..4036269 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3699.t1Gvermi3699.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 4035232..4036269 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3699.t1 ID=Gvermi3699.t1|Name=Gvermi3699.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=346bp
MKTAFVCPQYRFLLFGRQNTQLLVSRQKRKFLRQCDRHTASLSLQEEPSH
ALNIDYDEFVSDDTHVVLDSSQVSAVLDKLKANGSDTGLDLDWEEEFLSL
AEEEDKKLSNVQTQLTIDTEEPQSETEQVQSEIEQVQSETEDKDFNQGTM
KYFSDENISHMPRWLREMYEKGSHEELEVNAEKFCNRQRLHKILDRKKDL
DANSLSNGDGIVDCTVGDVADDYFVPIEFVVDAMLAYGVPVPISESTSIR
NSMTTEEIQKLLKLITSFDHVDLSERYSDDSLAELADAYDTDVSRFIDVC
EKEGLYLCRGENTRLSLVRENRVLDILFRGADMGRPYPPLLEGLD*
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spliced messenger RNA

>Gvermi3699.t1 ID=Gvermi3699.t1|Name=Gvermi3699.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1038bp|location=Sequence derived from alignment at ScGOVlb_41:4035232..4036269- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAACGGCATTCGTGTGTCCTCAGTATCGATTCTTGTTGTTCGGCCG
TCAAAATACCCAACTGCTCGTTTCTCGACAAAAGAGAAAATTCCTCAGAC
AATGCGATAGGCATACTGCATCGCTTTCCCTTCAAGAAGAGCCATCCCAT
GCCCTGAATATTGACTATGATGAGTTTGTTTCGGATGATACACATGTCGT
ATTGGACAGCTCCCAAGTCAGCGCTGTTTTGGACAAACTGAAGGCCAACG
GCAGCGATACCGGTCTTGATCTCGATTGGGAAGAGGAGTTCCTTTCACTG
GCTGAAGAGGAAGACAAAAAACTATCCAATGTGCAAACTCAGCTAACGAT
CGACACAGAAGAACCACAATCCGAAACTGAACAAGTCCAATCCGAAATTG
AACAAGTACAATCCGAAACAGAAGATAAAGATTTCAATCAAGGGACAATG
AAGTATTTCTCTGACGAAAACATTTCGCACATGCCACGGTGGCTACGTGA
AATGTATGAGAAAGGCTCACACGAGGAGCTGGAAGTGAATGCCGAAAAAT
TTTGCAACAGGCAACGGTTGCACAAAATCTTAGATCGAAAGAAGGACTTG
GATGCAAATAGTTTATCAAATGGGGACGGCATTGTGGATTGCACCGTTGG
AGATGTTGCGGACGATTATTTTGTTCCGATCGAGTTCGTGGTGGACGCCA
TGCTCGCGTACGGTGTGCCAGTTCCAATATCGGAATCCACAAGCATCAGA
AATAGCATGACCACTGAGGAAATTCAGAAGTTGCTCAAGCTCATCACCAG
TTTTGATCATGTTGATTTGTCCGAAAGATACAGCGACGATAGTCTGGCCG
AGCTTGCCGATGCCTACGATACTGATGTGTCACGTTTTATTGACGTTTGT
GAAAAAGAAGGTTTGTACCTATGCCGCGGAGAAAACACACGGTTATCATT
GGTGAGAGAAAATCGGGTTTTGGATATTTTGTTTAGGGGAGCAGATATGG
GCCGGCCGTACCCACCTTTGCTGGAAGGATTGGATTAG
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protein sequence of Gvermi3699.t1

>Gvermi3699.t1 ID=Gvermi3699.t1|Name=Gvermi3699.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=346bp
MKTAFVCPQYRFLLFGRQNTQLLVSRQKRKFLRQCDRHTASLSLQEEPSH
ALNIDYDEFVSDDTHVVLDSSQVSAVLDKLKANGSDTGLDLDWEEEFLSL
AEEEDKKLSNVQTQLTIDTEEPQSETEQVQSEIEQVQSETEDKDFNQGTM
KYFSDENISHMPRWLREMYEKGSHEELEVNAEKFCNRQRLHKILDRKKDL
DANSLSNGDGIVDCTVGDVADDYFVPIEFVVDAMLAYGVPVPISESTSIR
NSMTTEEIQKLLKLITSFDHVDLSERYSDDSLAELADAYDTDVSRFIDVC
EKEGLYLCRGENTRLSLVRENRVLDILFRGADMGRPYPPLLEGLD*
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mRNA from alignment at ScGOVlb_41:4035232..4036269-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3699.t1 ID=Gvermi3699.t1|Name=Gvermi3699.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1038bp|location=Sequence derived from alignment at ScGOVlb_41:4035232..4036269- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAAACGGCATTCGTGTGTCCTCAGTATCGATTCTTGTTGTTCGGCCG
TCAAAATACCCAACTGCTCGTTTCTCGACAAAAGAGAAAATTCCTCAGAC
AATGCGATAGGCATACTGCATCGCTTTCCCTTCAAGAAGAGCCATCCCAT
GCCCTGAATATTGACTATGATGAGTTTGTTTCGGATGATACACATGTCGT
ATTGGACAGCTCCCAAGTCAGCGCTGTTTTGGACAAACTGAAGGCCAACG
GCAGCGATACCGGTCTTGATCTCGATTGGGAAGAGGAGTTCCTTTCACTG
GCTGAAGAGGAAGACAAAAAACTATCCAATGTGCAAACTCAGCTAACGAT
CGACACAGAAGAACCACAATCCGAAACTGAACAAGTCCAATCCGAAATTG
AACAAGTACAATCCGAAACAGAAGATAAAGATTTCAATCAAGGGACAATG
AAGTATTTCTCTGACGAAAACATTTCGCACATGCCACGGTGGCTACGTGA
AATGTATGAGAAAGGCTCACACGAGGAGCTGGAAGTGAATGCCGAAAAAT
TTTGCAACAGGCAACGGTTGCACAAAATCTTAGATCGAAAGAAGGACTTG
GATGCAAATAGTTTATCAAATGGGGACGGCATTGTGGATTGCACCGTTGG
AGATGTTGCGGACGATTATTTTGTTCCGATCGAGTTCGTGGTGGACGCCA
TGCTCGCGTACGGTGTGCCAGTTCCAATATCGGAATCCACAAGCATCAGA
AATAGCATGACCACTGAGGAAATTCAGAAGTTGCTCAAGCTCATCACCAG
TTTTGATCATGTTGATTTGTCCGAAAGATACAGCGACGATAGTCTGGCCG
AGCTTGCCGATGCCTACGATACTGATGTGTCACGTTTTATTGACGTTTGT
GAAAAAGAAGGTTTGTACCTATGCCGCGGAGAAAACACACGGTTATCATT
GGTGAGAGAAAATCGGGTTTTGGATATTTTGTTTAGGGGAGCAGATATGG
GCCGGCCGTACCCACCTTTGCTGGAAGGATTGGATTAG
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Coding sequence (CDS) from alignment at ScGOVlb_41:4035232..4036269-

>Gvermi3699.t1 ID=Gvermi3699.t1|Name=Gvermi3699.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1038bp|location=Sequence derived from alignment at ScGOVlb_41:4035232..4036269- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAAACGGCATTCGTGTGTCCTCAGTATCGATTCTTGTTGTTCGGCCG
TCAAAATACCCAACTGCTCGTTTCTCGACAAAAGAGAAAATTCCTCAGAC
AATGCGATAGGCATACTGCATCGCTTTCCCTTCAAGAAGAGCCATCCCAT
GCCCTGAATATTGACTATGATGAGTTTGTTTCGGATGATACACATGTCGT
ATTGGACAGCTCCCAAGTCAGCGCTGTTTTGGACAAACTGAAGGCCAACG
GCAGCGATACCGGTCTTGATCTCGATTGGGAAGAGGAGTTCCTTTCACTG
GCTGAAGAGGAAGACAAAAAACTATCCAATGTGCAAACTCAGCTAACGAT
CGACACAGAAGAACCACAATCCGAAACTGAACAAGTCCAATCCGAAATTG
AACAAGTACAATCCGAAACAGAAGATAAAGATTTCAATCAAGGGACAATG
AAGTATTTCTCTGACGAAAACATTTCGCACATGCCACGGTGGCTACGTGA
AATGTATGAGAAAGGCTCACACGAGGAGCTGGAAGTGAATGCCGAAAAAT
TTTGCAACAGGCAACGGTTGCACAAAATCTTAGATCGAAAGAAGGACTTG
GATGCAAATAGTTTATCAAATGGGGACGGCATTGTGGATTGCACCGTTGG
AGATGTTGCGGACGATTATTTTGTTCCGATCGAGTTCGTGGTGGACGCCA
TGCTCGCGTACGGTGTGCCAGTTCCAATATCGGAATCCACAAGCATCAGA
AATAGCATGACCACTGAGGAAATTCAGAAGTTGCTCAAGCTCATCACCAG
TTTTGATCATGTTGATTTGTCCGAAAGATACAGCGACGATAGTCTGGCCG
AGCTTGCCGATGCCTACGATACTGATGTGTCACGTTTTATTGACGTTTGT
GAAAAAGAAGGTTTGTACCTATGCCGCGGAGAAAACACACGGTTATCATT
GGTGAGAGAAAATCGGGTTTTGGATATTTTGTTTAGGGGAGCAGATATGG
GCCGGCCGTACCCACCTTTGCTGGAAGGATTGGATTAG
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