Gvermi3696.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3696.t1
Unique NameGvermi3696.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length308
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:4031401..4032428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3696Gvermi3696Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 4031401..4032428 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3696.t1Gvermi3696.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 4031401..4032428 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3696.t1.stop1Gvermi3696.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 4031401..4031403 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3696.t1.CDS1Gvermi3696.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4031401..4031563 -
Gvermi3696.t1.CDS2Gvermi3696.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4031668..4032428 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3696.t1.exon1Gvermi3696.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4031401..4031563 -
Gvermi3696.t1.exon2Gvermi3696.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4031668..4032428 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3696.t1.intron1Gvermi3696.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 4031564..4031667 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3696.t1.start1Gvermi3696.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 4032426..4032428 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3696.t1 ID=Gvermi3696.t1|Name=Gvermi3696.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=308bp
MSTDKLAVSNDEITSMVRQTLVGQDLSKITGKMVRERIINQLGDRIQPHN
FAAIKAAVKASLNIVLHDPNPPTSNTRATETHAAPKPHPAQSAPQVSPHE
HTRKSDHPVRKTEPPNPESDGSGRRAQTKPRSKKRPRKVLNSDSESCSGP
EPQPKPARKKNSASSVQKRAEAQSNPAAVRRLDQLKKLCRQLGCPVPPAK
LRGTDPRDKIDNIVQYLQSKGVRCADPLGMSSREISQHRNRIAKEKDLEG
LDMNNIIEEEGRSRRRVSKTKKQLSDKLPSDLSGEDFAEDSESAESEGYA
APSDDSE*
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spliced messenger RNA

>Gvermi3696.t1 ID=Gvermi3696.t1|Name=Gvermi3696.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=924bp|location=Sequence derived from alignment at ScGOVlb_41:4031401..4032428- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCACAGACAAATTAGCGGTTTCAAATGACGAAATAACATCAATGGT
GCGCCAGACCCTCGTGGGTCAGGACCTCAGCAAGATTACCGGCAAAATGG
TGCGCGAGCGCATTATCAACCAACTCGGCGACCGCATTCAGCCTCACAAC
TTTGCTGCTATTAAAGCCGCCGTCAAGGCTTCGCTCAACATCGTCCTCCA
TGACCCCAATCCACCCACGTCGAACACCCGCGCAACGGAGACCCACGCCG
CGCCGAAGCCCCATCCGGCTCAAAGTGCCCCACAAGTGTCTCCACACGAA
CACACGCGGAAATCAGATCATCCCGTGCGTAAAACTGAGCCGCCGAATCC
GGAATCGGATGGTAGTGGCCGCCGAGCACAGACAAAGCCTCGATCGAAGA
AACGACCCCGAAAGGTGTTAAACTCAGATTCAGAATCATGCTCAGGCCCG
GAGCCGCAACCGAAACCCGCCCGTAAGAAGAACTCCGCATCCTCTGTTCA
GAAGCGCGCAGAAGCGCAGTCGAATCCTGCCGCTGTACGACGACTTGACC
AGCTCAAGAAGCTTTGCCGCCAGCTTGGATGTCCAGTGCCCCCTGCGAAA
CTGCGGGGTACAGACCCGCGCGACAAGATCGATAACATTGTTCAATACCT
ACAGTCGAAGGGGGTGCGATGCGCGGATCCCCTCGGCATGTCGTCTCGTG
AAATCTCGCAGCATCGCAACCGCATCGCCAAAGAGAAGGACCTTGAAGGC
CTCGATATGAACAATATAATTGAAGAGGAAGGCAGGTCGAGGCGACGCGT
TTCTAAAACAAAAAAGCAGCTAAGCGATAAGTTGCCATCGGATCTTAGTG
GTGAAGACTTCGCGGAAGATTCGGAGAGTGCAGAGAGTGAGGGATACGCG
GCACCGTCGGACGACTCCGAATGA
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protein sequence of Gvermi3696.t1

>Gvermi3696.t1 ID=Gvermi3696.t1|Name=Gvermi3696.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=308bp
MSTDKLAVSNDEITSMVRQTLVGQDLSKITGKMVRERIINQLGDRIQPHN
FAAIKAAVKASLNIVLHDPNPPTSNTRATETHAAPKPHPAQSAPQVSPHE
HTRKSDHPVRKTEPPNPESDGSGRRAQTKPRSKKRPRKVLNSDSESCSGP
EPQPKPARKKNSASSVQKRAEAQSNPAAVRRLDQLKKLCRQLGCPVPPAK
LRGTDPRDKIDNIVQYLQSKGVRCADPLGMSSREISQHRNRIAKEKDLEG
LDMNNIIEEEGRSRRRVSKTKKQLSDKLPSDLSGEDFAEDSESAESEGYA
APSDDSE*
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mRNA from alignment at ScGOVlb_41:4031401..4032428-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3696.t1 ID=Gvermi3696.t1|Name=Gvermi3696.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1028bp|location=Sequence derived from alignment at ScGOVlb_41:4031401..4032428- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCACAGACAAATTAGCGGTTTCAAATGACGAAATAACATCAATGGT
GCGCCAGACCCTCGTGGGTCAGGACCTCAGCAAGATTACCGGCAAAATGG
TGCGCGAGCGCATTATCAACCAACTCGGCGACCGCATTCAGCCTCACAAC
TTTGCTGCTATTAAAGCCGCCGTCAAGGCTTCGCTCAACATCGTCCTCCA
TGACCCCAATCCACCCACGTCGAACACCCGCGCAACGGAGACCCACGCCG
CGCCGAAGCCCCATCCGGCTCAAAGTGCCCCACAAGTGTCTCCACACGAA
CACACGCGGAAATCAGATCATCCCGTGCGTAAAACTGAGCCGCCGAATCC
GGAATCGGATGGTAGTGGCCGCCGAGCACAGACAAAGCCTCGATCGAAGA
AACGACCCCGAAAGGTGTTAAACTCAGATTCAGAATCATGCTCAGGCCCG
GAGCCGCAACCGAAACCCGCCCGTAAGAAGAACTCCGCATCCTCTGTTCA
GAAGCGCGCAGAAGCGCAGTCGAATCCTGCCGCTGTACGACGACTTGACC
AGCTCAAGAAGCTTTGCCGCCAGCTTGGATGTCCAGTGCCCCCTGCGAAA
CTGCGGGGTACAGACCCGCGCGACAAGATCGATAACATTGTTCAATACCT
ACAGTCGAAGGGGGTGCGATGCGCGGATCCCCTCGGCATGTCGTCTCGTG
AAATCTCGCAGCATCGCAACCGCATCGCCAAAGAGAAGGACCTTGAAGGC
CTCGATATGAAGTACGTTTTACAAAAAGCATTGATATACAGCGCCGAAGC
TTTATTTGATGTACTAACGGGCGTCATTTCGTTTCCTACGCTCCTTTTCT
TCACACACAAAAAAGCAATATAATTGAAGAGGAAGGCAGGTCGAGGCGAC
GCGTTTCTAAAACAAAAAAGCAGCTAAGCGATAAGTTGCCATCGGATCTT
AGTGGTGAAGACTTCGCGGAAGATTCGGAGAGTGCAGAGAGTGAGGGATA
CGCGGCACCGTCGGACGACTCCGAATGA
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Coding sequence (CDS) from alignment at ScGOVlb_41:4031401..4032428-

>Gvermi3696.t1 ID=Gvermi3696.t1|Name=Gvermi3696.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=924bp|location=Sequence derived from alignment at ScGOVlb_41:4031401..4032428- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCACAGACAAATTAGCGGTTTCAAATGACGAAATAACATCAATGGT
GCGCCAGACCCTCGTGGGTCAGGACCTCAGCAAGATTACCGGCAAAATGG
TGCGCGAGCGCATTATCAACCAACTCGGCGACCGCATTCAGCCTCACAAC
TTTGCTGCTATTAAAGCCGCCGTCAAGGCTTCGCTCAACATCGTCCTCCA
TGACCCCAATCCACCCACGTCGAACACCCGCGCAACGGAGACCCACGCCG
CGCCGAAGCCCCATCCGGCTCAAAGTGCCCCACAAGTGTCTCCACACGAA
CACACGCGGAAATCAGATCATCCCGTGCGTAAAACTGAGCCGCCGAATCC
GGAATCGGATGGTAGTGGCCGCCGAGCACAGACAAAGCCTCGATCGAAGA
AACGACCCCGAAAGGTGTTAAACTCAGATTCAGAATCATGCTCAGGCCCG
GAGCCGCAACCGAAACCCGCCCGTAAGAAGAACTCCGCATCCTCTGTTCA
GAAGCGCGCAGAAGCGCAGTCGAATCCTGCCGCTGTACGACGACTTGACC
AGCTCAAGAAGCTTTGCCGCCAGCTTGGATGTCCAGTGCCCCCTGCGAAA
CTGCGGGGTACAGACCCGCGCGACAAGATCGATAACATTGTTCAATACCT
ACAGTCGAAGGGGGTGCGATGCGCGGATCCCCTCGGCATGTCGTCTCGTG
AAATCTCGCAGCATCGCAACCGCATCGCCAAAGAGAAGGACCTTGAAGGC
CTCGATATGAACAATATAATTGAAGAGGAAGGCAGGTCGAGGCGACGCGT
TTCTAAAACAAAAAAGCAGCTAAGCGATAAGTTGCCATCGGATCTTAGTG
GTGAAGACTTCGCGGAAGATTCGGAGAGTGCAGAGAGTGAGGGATACGCG
GCACCGTCGGACGACTCCGAATGA
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