Gvermi3643.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3643.t1
Unique NameGvermi3643.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length206
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:3773123..3773922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5762.XP_002676871.1
Preferred nameTMED2
PFAMsEMP24_GP25L
Max annot lvl2759|Eukaryota
KEGG koko:K20347
KEGG TC9.B.188.1.2
GOsGO:0000003,GO:0000139,GO:0000578,GO:0001568,GO:0001701,GO:0001756,GO:0001838,GO:0001841,GO:0001843,GO:0001890,GO:0001892,GO:0001893,GO:0001944,GO:0001947,GO:0002009,GO:0002790,GO:0003002,GO:0003006,GO:0003007,GO:0003143,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0006621,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007030,GO:0007154,GO:0007267,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007444,GO:0007507,GO:0007565,GO:0008104,GO:0008150,GO:0008565,GO:0008593,GO:0009306,GO:0009653,GO:0009790,GO:0009792,GO:0009798,GO:0009799,GO:0009855,GO:0009880,GO:0009887,GO:0009888,GO:0009893,GO:0009948,GO:0009952,GO:0009966,GO:0009987,GO:0010256,GO:0010468,GO:0010604,GO:0010628,GO:0010646,GO:0012505,GO:0012506,GO:0012507,GO:0014020,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016331,GO:0019222,GO:0021915,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023061,GO:0030133,GO:0030134,GO:0030135,GO:0030137,GO:0030141,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030667,GO:0031090,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032507,GO:0032525,GO:0032940,GO:0033036,GO:0033116,GO:0033365,GO:0034260,GO:0034613,GO:0034622,GO:0035050,GO:0035148,GO:0035220,GO:0035239,GO:0035264,GO:0035282,GO:0035295,GO:0035437,GO:0035459,GO:0035964,GO:0036342,GO:0040007,GO:0042175,GO:0042588,GO:0042589,GO:0042886,GO:0043009,GO:0043086,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044092,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0045184,GO:0045185,GO:0046662,GO:0046903,GO:0046907,GO:0048042,GO:0048193,GO:0048194,GO:0048199,GO:0048200,GO:0048205,GO:0048207,GO:0048208,GO:0048513,GO:0048518,GO:0048519,GO:0048562,GO:0048568,GO:0048583,GO:0048589,GO:0048598,GO:0048608,GO:0048609,GO:0048646,GO:0048729,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050795,GO:0051179,GO:0051234,GO:0051235,GO:0051239,GO:0051336,GO:0051346,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051651,GO:0051656,GO:0051704,GO:0060135,GO:0060255,GO:0060429,GO:0060562,GO:0060606,GO:0060674,GO:0060711,GO:0060716,GO:0061024,GO:0061053,GO:0061355,GO:0061371,GO:0061458,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071840,GO:0072175,GO:0072358,GO:0072359,GO:0072595,GO:0072657,GO:0072659,GO:0090114,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:0098827,GO:0099503,GO:0198738,GO:1990778,GO:2000241
Evalue2.71e-31
EggNOG OGsKOG1692@1|root,KOG1692@2759|Eukaryota
Descriptionprotein transport
COG categoryS
BRITEko00000,ko02000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3643Gvermi3643Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 3773123..3773922 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3643.t1Gvermi3643.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 3773123..3773922 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3643.t1.start1Gvermi3643.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 3773123..3773125 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3643.t1.CDS1Gvermi3643.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 3773123..3773410 +
Gvermi3643.t1.CDS2Gvermi3643.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 3773515..3773704 +
Gvermi3643.t1.CDS3Gvermi3643.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 3773783..3773922 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3643.t1.exon1Gvermi3643.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 3773123..3773410 +
Gvermi3643.t1.exon2Gvermi3643.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 3773515..3773704 +
Gvermi3643.t1.exon3Gvermi3643.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 3773783..3773922 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3643.t1.intron1Gvermi3643.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 3773411..3773514 +
Gvermi3643.t1.intron2Gvermi3643.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 3773705..3773782 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3643.t1.stop1Gvermi3643.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 3773920..3773922 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3643.t1 ID=Gvermi3643.t1|Name=Gvermi3643.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=206bp
MGRELLALILLCFSTSVCAISFDLPPGKIECFFEDVHQGTTINGAYAVTQ
GSHMDIDVQIFNPEGTQMYNAKRGGEDKFMIKADRDGTYKFCFSNKMSMV
SHKTVKLVITTGDPIDFSKLAKKESMDNVERWIVSITHTVRMIDFHQQEY
RMLHERHLKTVTSTNRRVKWWSFLECLAVMGVSGVQVMFIKRMFNKGGPG
VKRMV*
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spliced messenger RNA

>Gvermi3643.t1 ID=Gvermi3643.t1|Name=Gvermi3643.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=618bp|location=Sequence derived from alignment at ScGOVlb_41:3773123..3773922+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCGTGAACTTCTCGCCCTTATCTTGCTCTGTTTTTCAACTTCTGT
ATGCGCCATAAGCTTTGATTTACCCCCAGGGAAGATTGAATGCTTTTTTG
AAGACGTTCATCAGGGAACCACCATCAATGGCGCATATGCTGTCACTCAA
GGATCTCATATGGATATCGATGTGCAAATCTTCAATCCTGAGGGCACTCA
GATGTACAACGCAAAGCGCGGCGGCGAAGACAAATTTATGATAAAGGCAG
ACAGAGACGGGACCTATAAGTTCTGTTTCAGTAACAAGATGAGCATGGTT
TCACATAAGACGGTTAAACTAGTCATCACCACCGGCGATCCAATAGACTT
CTCTAAGCTTGCCAAGAAGGAAAGTATGGACAACGTCGAACGGTGGATCG
TCAGCATCACGCACACCGTGCGCATGATTGATTTCCACCAACAGGAGTAT
AGAATGTTGCACGAGAGGCATTTAAAAACTGTGACGTCAACAAATAGAAG
AGTAAAGTGGTGGTCGTTCCTTGAATGTCTAGCCGTAATGGGCGTCTCGG
GTGTTCAAGTGATGTTCATCAAAAGAATGTTCAATAAGGGCGGACCAGGA
GTGAAGCGCATGGTGTAA
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protein sequence of Gvermi3643.t1

>Gvermi3643.t1 ID=Gvermi3643.t1|Name=Gvermi3643.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=206bp
MGRELLALILLCFSTSVCAISFDLPPGKIECFFEDVHQGTTINGAYAVTQ
GSHMDIDVQIFNPEGTQMYNAKRGGEDKFMIKADRDGTYKFCFSNKMSMV
SHKTVKLVITTGDPIDFSKLAKKESMDNVERWIVSITHTVRMIDFHQQEY
RMLHERHLKTVTSTNRRVKWWSFLECLAVMGVSGVQVMFIKRMFNKGGPG
VKRMV*
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mRNA from alignment at ScGOVlb_41:3773123..3773922+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3643.t1 ID=Gvermi3643.t1|Name=Gvermi3643.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=800bp|location=Sequence derived from alignment at ScGOVlb_41:3773123..3773922+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTCGTGAACTTCTCGCCCTTATCTTGCTCTGTTTTTCAACTTCTGT
ATGCGCCATAAGCTTTGATTTACCCCCAGGGAAGATTGAATGCTTTTTTG
AAGACGTTCATCAGGGAACCACCATCAATGGCGCATATGCTGTCACTCAA
GGATCTCATATGGATATCGATGTGCAAATCTTCAATCCTGAGGGCACTCA
GATGTACAACGCAAAGCGCGGCGGCGAAGACAAATTTATGATAAAGGCAG
ACAGAGACGGGACCTATAAGTTCTGTTTCAGTAACAAGGTATGTTATTTT
CAAACTGATGCAATGACCAAGTTCCCATCTTCTATATGTCCTCAGTGTCT
TCTAACAGCCAAACATTGCGATCTTCATGCGCACATCAACAGATGAGCAT
GGTTTCACATAAGACGGTTAAACTAGTCATCACCACCGGCGATCCAATAG
ACTTCTCTAAGCTTGCCAAGAAGGAAAGTATGGACAACGTCGAACGGTGG
ATCGTCAGCATCACGCACACCGTGCGCATGATTGATTTCCACCAACAGGA
GTATAGAATGTTGCACGAGAGGCATTTAAAAAGTAAGTTCGTTCACCTTT
ACTCTGGATACCGAGCAAATTCTAATCATATAGCTGACCATGCTTTAATA
TTCGGTACAGCTGTGACGTCAACAAATAGAAGAGTAAAGTGGTGGTCGTT
CCTTGAATGTCTAGCCGTAATGGGCGTCTCGGGTGTTCAAGTGATGTTCA
TCAAAAGAATGTTCAATAAGGGCGGACCAGGAGTGAAGCGCATGGTGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_41:3773123..3773922+

>Gvermi3643.t1 ID=Gvermi3643.t1|Name=Gvermi3643.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=618bp|location=Sequence derived from alignment at ScGOVlb_41:3773123..3773922+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTCGTGAACTTCTCGCCCTTATCTTGCTCTGTTTTTCAACTTCTGT
ATGCGCCATAAGCTTTGATTTACCCCCAGGGAAGATTGAATGCTTTTTTG
AAGACGTTCATCAGGGAACCACCATCAATGGCGCATATGCTGTCACTCAA
GGATCTCATATGGATATCGATGTGCAAATCTTCAATCCTGAGGGCACTCA
GATGTACAACGCAAAGCGCGGCGGCGAAGACAAATTTATGATAAAGGCAG
ACAGAGACGGGACCTATAAGTTCTGTTTCAGTAACAAGATGAGCATGGTT
TCACATAAGACGGTTAAACTAGTCATCACCACCGGCGATCCAATAGACTT
CTCTAAGCTTGCCAAGAAGGAAAGTATGGACAACGTCGAACGGTGGATCG
TCAGCATCACGCACACCGTGCGCATGATTGATTTCCACCAACAGGAGTAT
AGAATGTTGCACGAGAGGCATTTAAAAACTGTGACGTCAACAAATAGAAG
AGTAAAGTGGTGGTCGTTCCTTGAATGTCTAGCCGTAATGGGCGTCTCGG
GTGTTCAAGTGATGTTCATCAAAAGAATGTTCAATAAGGGCGGACCAGGA
GTGAAGCGCATGGTGTAA
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