Gvermi3571.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3571.t1
Unique NameGvermi3571.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length340
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:3427514..3428597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173028.ANKO01000250_gene2276
Preferred namersmI
PFAMsTP_methylase
Max annot lvl1117|Cyanobacteria
KEGG koko:K07056
GOsGO:0000154,GO:0000451,GO:0000453,GO:0001510,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360
Evalue6.75e-66
EggNOG OGsCOG0313@1|root,COG0313@2|Bacteria,1G0IF@1117|Cyanobacteria,1H7AW@1150|Oscillatoriales
EC2.1.1.198
DescriptionCatalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
COG categoryH
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3571Gvermi3571Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 3427514..3428597 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3571.t1Gvermi3571.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 3427514..3428597 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3571.t1.stop1Gvermi3571.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 3427514..3427516 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3571.t1.CDS1Gvermi3571.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 3427514..3428308 -
Gvermi3571.t1.CDS2Gvermi3571.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 3428373..3428597 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3571.t1.exon1Gvermi3571.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 3427514..3428308 -
Gvermi3571.t1.exon2Gvermi3571.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 3428373..3428597 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3571.t1.intron1Gvermi3571.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 3428309..3428372 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3571.t1.start1Gvermi3571.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 3428595..3428597 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3571.t1 ID=Gvermi3571.t1|Name=Gvermi3571.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=340bp
MCAFAFVPRILPRVSSPRASSRLLICARADGSSAWKQPSSTHGTLFLVPT
PIGNARDITLRAIDVLSAVDVVAAEDTRNARDLLRPLERPSHQLLLSCHE
HNWRSRIPTLLSHLERGRDVAIVSDAGTPCVSDPGAQVVQAVVAAGLKVV
PLPGPCAAVSALVASALPSPTFTFVGFLPRVGEARRKAVEHVAKIKSTVV
LYEAPHRLIATLRALQQVEGEGRPCCLAREMTKKYEQFLRFDTISNAYQF
YNNHTEKPRGEFTIVLAPSPVQPLVEHDLSTYPTAPVELSAMVESLVKDG
IPVSAVARAVSSACDVPKKLVYAYATKVKEQLMWADVDT*
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spliced messenger RNA

>Gvermi3571.t1 ID=Gvermi3571.t1|Name=Gvermi3571.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1020bp|location=Sequence derived from alignment at ScGOVlb_41:3427514..3428597- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGCCTTCGCCTTCGTTCCTCGTATTCTACCGCGCGTTTCTTCGCC
CCGCGCCTCTTCTCGCCTTCTCATCTGCGCGCGCGCCGACGGTTCATCTG
CGTGGAAGCAGCCCTCCTCCACCCACGGAACTCTCTTCCTCGTTCCAACT
CCTATCGGCAACGCGCGCGACATAACTCTTCGCGCCATCGATGTTCTCAG
CGCCGTGGACGTCGTAGCTGCCGAAGATACGCGAAATGCTCGAGATCTGT
TGCGACCTCTAGAACGACCGTCTCACCAGCTGCTCCTTTCCTGCCATGAA
CATAACTGGCGCTCGAGGATCCCTACTCTGCTGTCGCACTTAGAGCGCGG
CCGAGATGTTGCCATCGTGTCTGATGCGGGCACTCCGTGCGTCTCCGACC
CTGGAGCGCAGGTAGTGCAGGCGGTTGTGGCCGCTGGCCTCAAGGTAGTT
CCGCTGCCAGGCCCGTGTGCGGCCGTATCTGCTCTCGTAGCCAGCGCGCT
GCCCTCACCGACCTTTACTTTCGTCGGATTCCTCCCGCGAGTTGGAGAGG
CTCGAAGAAAAGCCGTCGAGCACGTTGCCAAGATTAAGTCTACTGTTGTG
CTGTACGAAGCTCCCCATCGCTTGATTGCTACGCTCCGAGCTTTGCAGCA
AGTGGAGGGAGAAGGTAGGCCATGTTGTCTGGCGAGGGAGATGACTAAGA
AATACGAGCAGTTTCTCAGGTTTGACACCATATCTAATGCCTATCAGTTT
TATAACAATCACACGGAAAAGCCGAGGGGGGAGTTCACCATAGTCTTGGC
CCCGTCACCAGTTCAACCGCTTGTTGAACATGATCTCAGCACATACCCTA
CAGCCCCTGTCGAGCTTTCTGCAATGGTTGAGAGTCTTGTCAAAGATGGA
ATACCTGTTAGTGCAGTTGCAAGAGCTGTATCATCTGCATGCGATGTACC
AAAGAAACTTGTTTACGCGTATGCCACCAAGGTCAAAGAACAGCTCATGT
GGGCAGATGTTGACACATGA
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protein sequence of Gvermi3571.t1

>Gvermi3571.t1 ID=Gvermi3571.t1|Name=Gvermi3571.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=340bp
MCAFAFVPRILPRVSSPRASSRLLICARADGSSAWKQPSSTHGTLFLVPT
PIGNARDITLRAIDVLSAVDVVAAEDTRNARDLLRPLERPSHQLLLSCHE
HNWRSRIPTLLSHLERGRDVAIVSDAGTPCVSDPGAQVVQAVVAAGLKVV
PLPGPCAAVSALVASALPSPTFTFVGFLPRVGEARRKAVEHVAKIKSTVV
LYEAPHRLIATLRALQQVEGEGRPCCLAREMTKKYEQFLRFDTISNAYQF
YNNHTEKPRGEFTIVLAPSPVQPLVEHDLSTYPTAPVELSAMVESLVKDG
IPVSAVARAVSSACDVPKKLVYAYATKVKEQLMWADVDT*
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mRNA from alignment at ScGOVlb_41:3427514..3428597-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3571.t1 ID=Gvermi3571.t1|Name=Gvermi3571.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1084bp|location=Sequence derived from alignment at ScGOVlb_41:3427514..3428597- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGCGCCTTCGCCTTCGTTCCTCGTATTCTACCGCGCGTTTCTTCGCC
CCGCGCCTCTTCTCGCCTTCTCATCTGCGCGCGCGCCGACGGTTCATCTG
CGTGGAAGCAGCCCTCCTCCACCCACGGAACTCTCTTCCTCGTTCCAACT
CCTATCGGCAACGCGCGCGACATAACTCTTCGCGCCATCGATGTTCTCAG
CGCCGTGGACGTCGTAGCTGCCGAAGTAAGCTCTCCATATCCTCTTCCGC
TGCTGCTTGCGTTTTGTTTGTGCTTATTAACGTTTGCAGGATACGCGAAA
TGCTCGAGATCTGTTGCGACCTCTAGAACGACCGTCTCACCAGCTGCTCC
TTTCCTGCCATGAACATAACTGGCGCTCGAGGATCCCTACTCTGCTGTCG
CACTTAGAGCGCGGCCGAGATGTTGCCATCGTGTCTGATGCGGGCACTCC
GTGCGTCTCCGACCCTGGAGCGCAGGTAGTGCAGGCGGTTGTGGCCGCTG
GCCTCAAGGTAGTTCCGCTGCCAGGCCCGTGTGCGGCCGTATCTGCTCTC
GTAGCCAGCGCGCTGCCCTCACCGACCTTTACTTTCGTCGGATTCCTCCC
GCGAGTTGGAGAGGCTCGAAGAAAAGCCGTCGAGCACGTTGCCAAGATTA
AGTCTACTGTTGTGCTGTACGAAGCTCCCCATCGCTTGATTGCTACGCTC
CGAGCTTTGCAGCAAGTGGAGGGAGAAGGTAGGCCATGTTGTCTGGCGAG
GGAGATGACTAAGAAATACGAGCAGTTTCTCAGGTTTGACACCATATCTA
ATGCCTATCAGTTTTATAACAATCACACGGAAAAGCCGAGGGGGGAGTTC
ACCATAGTCTTGGCCCCGTCACCAGTTCAACCGCTTGTTGAACATGATCT
CAGCACATACCCTACAGCCCCTGTCGAGCTTTCTGCAATGGTTGAGAGTC
TTGTCAAAGATGGAATACCTGTTAGTGCAGTTGCAAGAGCTGTATCATCT
GCATGCGATGTACCAAAGAAACTTGTTTACGCGTATGCCACCAAGGTCAA
AGAACAGCTCATGTGGGCAGATGTTGACACATGA
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Coding sequence (CDS) from alignment at ScGOVlb_41:3427514..3428597-

>Gvermi3571.t1 ID=Gvermi3571.t1|Name=Gvermi3571.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1020bp|location=Sequence derived from alignment at ScGOVlb_41:3427514..3428597- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGCGCCTTCGCCTTCGTTCCTCGTATTCTACCGCGCGTTTCTTCGCC
CCGCGCCTCTTCTCGCCTTCTCATCTGCGCGCGCGCCGACGGTTCATCTG
CGTGGAAGCAGCCCTCCTCCACCCACGGAACTCTCTTCCTCGTTCCAACT
CCTATCGGCAACGCGCGCGACATAACTCTTCGCGCCATCGATGTTCTCAG
CGCCGTGGACGTCGTAGCTGCCGAAGATACGCGAAATGCTCGAGATCTGT
TGCGACCTCTAGAACGACCGTCTCACCAGCTGCTCCTTTCCTGCCATGAA
CATAACTGGCGCTCGAGGATCCCTACTCTGCTGTCGCACTTAGAGCGCGG
CCGAGATGTTGCCATCGTGTCTGATGCGGGCACTCCGTGCGTCTCCGACC
CTGGAGCGCAGGTAGTGCAGGCGGTTGTGGCCGCTGGCCTCAAGGTAGTT
CCGCTGCCAGGCCCGTGTGCGGCCGTATCTGCTCTCGTAGCCAGCGCGCT
GCCCTCACCGACCTTTACTTTCGTCGGATTCCTCCCGCGAGTTGGAGAGG
CTCGAAGAAAAGCCGTCGAGCACGTTGCCAAGATTAAGTCTACTGTTGTG
CTGTACGAAGCTCCCCATCGCTTGATTGCTACGCTCCGAGCTTTGCAGCA
AGTGGAGGGAGAAGGTAGGCCATGTTGTCTGGCGAGGGAGATGACTAAGA
AATACGAGCAGTTTCTCAGGTTTGACACCATATCTAATGCCTATCAGTTT
TATAACAATCACACGGAAAAGCCGAGGGGGGAGTTCACCATAGTCTTGGC
CCCGTCACCAGTTCAACCGCTTGTTGAACATGATCTCAGCACATACCCTA
CAGCCCCTGTCGAGCTTTCTGCAATGGTTGAGAGTCTTGTCAAAGATGGA
ATACCTGTTAGTGCAGTTGCAAGAGCTGTATCATCTGCATGCGATGTACC
AAAGAAACTTGTTTACGCGTATGCCACCAAGGTCAAAGAACAGCTCATGT
GGGCAGATGTTGACACATGA
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