Gvermi3564.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3564.t1
Unique NameGvermi3564.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length239
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:3388731..3389777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708584.1
Preferred nameRPL13A
PFAMsRibosomal_L13
Max annot lvl2759|Eukaryota
KEGG rclassRC01978
KEGG koko:K02872,ko:K03644
KEGG ReactionR07767,R07768
KEGG Pathwayko00785,ko01100,ko03010,map00785,map01100,map03010
KEGG ModuleM00177
GOsGO:0000184,GO:0000956,GO:0002181,GO:0002237,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006928,GO:0006935,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007275,GO:0007423,GO:0008104,GO:0008150,GO:0008152,GO:0008407,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009653,GO:0009719,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010212,GO:0010224,GO:0010243,GO:0010332,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0014074,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0016477,GO:0017148,GO:0019222,GO:0019439,GO:0019538,GO:0022416,GO:0022625,GO:0022626,GO:0023052,GO:0030323,GO:0030324,GO:0030595,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0032268,GO:0032269,GO:0032496,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0033993,GO:0034097,GO:0034248,GO:0034249,GO:0034341,GO:0034613,GO:0034641,GO:0034644,GO:0034645,GO:0034655,GO:0035295,GO:0040011,GO:0042221,GO:0042330,GO:0042592,GO:0042886,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043603,GO:0043604,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045087,GO:0045184,GO:0045947,GO:0046483,GO:0046683,GO:0046700,GO:0046907,GO:0048246,GO:0048513,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0048870,GO:0050789,GO:0050794,GO:0050896,GO:0050900,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051591,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060326,GO:0060425,GO:0060541,GO:0065007,GO:0065008,GO:0070727,GO:0070887,GO:0070972,GO:0071214,GO:0071310,GO:0071320,GO:0071345,GO:0071346,GO:0071407,GO:0071417,GO:0071478,GO:0071479,GO:0071480,GO:0071482,GO:0071493,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0097452,GO:0097529,GO:0104004,GO:1901193,GO:1901194,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1904688,GO:1904689,GO:1905517,GO:1990904,GO:2000112,GO:2000113,GO:2000765,GO:2000766
Evalue5.68e-71
EggNOG OGsCOG0102@1|root,KOG3204@2759|Eukaryota
EC2.8.1.8
DescriptionBelongs to the universal ribosomal protein uL13 family
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3564Gvermi3564Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 3388731..3389777 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3564.t1Gvermi3564.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 3388731..3389777 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3564.t1.start1Gvermi3564.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 3388731..3388733 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3564.t1.CDS1Gvermi3564.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 3388731..3388821 +
Gvermi3564.t1.CDS2Gvermi3564.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 3389024..3389032 +
Gvermi3564.t1.CDS3Gvermi3564.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 3389161..3389777 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3564.t1.exon1Gvermi3564.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 3388731..3388821 +
Gvermi3564.t1.exon2Gvermi3564.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 3389024..3389032 +
Gvermi3564.t1.exon3Gvermi3564.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 3389161..3389777 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3564.t1.intron1Gvermi3564.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 3388822..3389023 +
Gvermi3564.t1.intron2Gvermi3564.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 3389033..3389160 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3564.t1.stop1Gvermi3564.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 3389775..3389777 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3564.t1 ID=Gvermi3564.t1|Name=Gvermi3564.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=239bp
MRSVMHGSEIETFYEFLASTLFPKQKWQTEIEEATKATAIMFQKRIVIDG
KGHLLGRLASVIAKELLNGQEIVVVRCEEIDISGTRHRNRKNFQSYLQKR
TNTNPKWGPFHHRAPRMILTKAVRGMLPRKTHRGEQAMARLKAYEGIPPT
YAQVKRMVIPNALRVTHLRPSSKYTNIGILAGEMGWKYGQLIRSQEQQRK
IKSAQDYEQRKELAKLKKKATENADLSDVAPVLEAAGY*
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spliced messenger RNA

>Gvermi3564.t1 ID=Gvermi3564.t1|Name=Gvermi3564.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=717bp|location=Sequence derived from alignment at ScGOVlb_41:3388731..3389777+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCAGCGTTATGCATGGTAGCGAAATCGAAACATTTTACGAATTTTT
GGCTTCCACCTTGTTTCCAAAGCAGAAGTGGCAAACCGAAATAGAAGAAG
CTACGAAAGCCACTGCTATAATGTTTCAGAAGCGCATCGTCATTGATGGT
AAAGGCCATCTTCTTGGACGTCTAGCGTCCGTCATTGCCAAAGAGCTCCT
CAATGGACAAGAGATTGTCGTCGTGCGTTGCGAGGAAATTGACATATCGG
GAACGCGTCATCGAAACCGCAAGAATTTCCAGAGCTACCTTCAAAAGCGC
ACGAACACCAATCCGAAATGGGGCCCATTTCATCACCGCGCCCCTCGCAT
GATACTCACCAAGGCCGTGCGTGGAATGCTCCCCAGAAAGACTCATCGTG
GTGAACAGGCAATGGCCAGACTTAAAGCTTATGAAGGAATCCCGCCGACA
TACGCGCAGGTGAAGAGAATGGTTATTCCCAACGCTCTACGCGTCACCCA
CTTGCGCCCGAGCTCAAAGTATACTAATATTGGCATTCTTGCCGGCGAAA
TGGGCTGGAAGTACGGCCAGCTCATTAGATCCCAGGAACAGCAACGGAAG
ATTAAGAGTGCGCAAGATTACGAACAGCGCAAGGAATTAGCTAAGCTCAA
AAAGAAAGCAACTGAGAACGCTGATCTTTCGGATGTTGCCCCTGTTCTCG
AAGCTGCTGGATATTAG
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protein sequence of Gvermi3564.t1

>Gvermi3564.t1 ID=Gvermi3564.t1|Name=Gvermi3564.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=239bp
MRSVMHGSEIETFYEFLASTLFPKQKWQTEIEEATKATAIMFQKRIVIDG
KGHLLGRLASVIAKELLNGQEIVVVRCEEIDISGTRHRNRKNFQSYLQKR
TNTNPKWGPFHHRAPRMILTKAVRGMLPRKTHRGEQAMARLKAYEGIPPT
YAQVKRMVIPNALRVTHLRPSSKYTNIGILAGEMGWKYGQLIRSQEQQRK
IKSAQDYEQRKELAKLKKKATENADLSDVAPVLEAAGY*
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mRNA from alignment at ScGOVlb_41:3388731..3389777+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3564.t1 ID=Gvermi3564.t1|Name=Gvermi3564.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1047bp|location=Sequence derived from alignment at ScGOVlb_41:3388731..3389777+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCAGCGTTATGCATGGTAGCGAAATCGAAACATTTTACGAATTTTT
GGCTTCCACCTTGTTTCCAAAGCAGAAGTGGCAAACCGAAAGTGTGGTGC
ACTTTGATCTTTGATCCAAAAAAGTTAAAACGGTTTTGTGATCCGCAATT
TGTAAGGTGTTGTGTAATTCTGCACGGACGACGATCGCCGACGGCCGGAA
TGTCTATCGCGTCGCGGGTTCTCCTCTGTCACCTCGACGTCCGGTCCTCC
GATCGTCTTCTTTATCGGCCATTCCGTGAACTGTAAAAGCCAGTAGAAGA
AGGTAAGTGTAGAATGCTATCGCGAGCATATTCAGCAACTGCACCCACAC
CCGTCCTTTTCGAGGCCTTTGAGATCTTTCCCAAATCTGCGACGTACTTC
ATTAACATTTACTAACAAATTGACGGTCAGCTACGAAAGCCACTGCTATA
ATGTTTCAGAAGCGCATCGTCATTGATGGTAAAGGCCATCTTCTTGGACG
TCTAGCGTCCGTCATTGCCAAAGAGCTCCTCAATGGACAAGAGATTGTCG
TCGTGCGTTGCGAGGAAATTGACATATCGGGAACGCGTCATCGAAACCGC
AAGAATTTCCAGAGCTACCTTCAAAAGCGCACGAACACCAATCCGAAATG
GGGCCCATTTCATCACCGCGCCCCTCGCATGATACTCACCAAGGCCGTGC
GTGGAATGCTCCCCAGAAAGACTCATCGTGGTGAACAGGCAATGGCCAGA
CTTAAAGCTTATGAAGGAATCCCGCCGACATACGCGCAGGTGAAGAGAAT
GGTTATTCCCAACGCTCTACGCGTCACCCACTTGCGCCCGAGCTCAAAGT
ATACTAATATTGGCATTCTTGCCGGCGAAATGGGCTGGAAGTACGGCCAG
CTCATTAGATCCCAGGAACAGCAACGGAAGATTAAGAGTGCGCAAGATTA
CGAACAGCGCAAGGAATTAGCTAAGCTCAAAAAGAAAGCAACTGAGAACG
CTGATCTTTCGGATGTTGCCCCTGTTCTCGAAGCTGCTGGATATTAG
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Coding sequence (CDS) from alignment at ScGOVlb_41:3388731..3389777+

>Gvermi3564.t1 ID=Gvermi3564.t1|Name=Gvermi3564.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=717bp|location=Sequence derived from alignment at ScGOVlb_41:3388731..3389777+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCAGCGTTATGCATGGTAGCGAAATCGAAACATTTTACGAATTTTT
GGCTTCCACCTTGTTTCCAAAGCAGAAGTGGCAAACCGAAATAGAAGAAG
CTACGAAAGCCACTGCTATAATGTTTCAGAAGCGCATCGTCATTGATGGT
AAAGGCCATCTTCTTGGACGTCTAGCGTCCGTCATTGCCAAAGAGCTCCT
CAATGGACAAGAGATTGTCGTCGTGCGTTGCGAGGAAATTGACATATCGG
GAACGCGTCATCGAAACCGCAAGAATTTCCAGAGCTACCTTCAAAAGCGC
ACGAACACCAATCCGAAATGGGGCCCATTTCATCACCGCGCCCCTCGCAT
GATACTCACCAAGGCCGTGCGTGGAATGCTCCCCAGAAAGACTCATCGTG
GTGAACAGGCAATGGCCAGACTTAAAGCTTATGAAGGAATCCCGCCGACA
TACGCGCAGGTGAAGAGAATGGTTATTCCCAACGCTCTACGCGTCACCCA
CTTGCGCCCGAGCTCAAAGTATACTAATATTGGCATTCTTGCCGGCGAAA
TGGGCTGGAAGTACGGCCAGCTCATTAGATCCCAGGAACAGCAACGGAAG
ATTAAGAGTGCGCAAGATTACGAACAGCGCAAGGAATTAGCTAAGCTCAA
AAAGAAAGCAACTGAGAACGCTGATCTTTCGGATGTTGCCCCTGTTCTCG
AAGCTGCTGGATATTAG
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