Gvermi3559.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3559.t1
Unique NameGvermi3559.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length473
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:3347259..3348677 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3559Gvermi3559Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 3347259..3348677 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3559.t1.stop1Gvermi3559.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 3347259..3347261 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3559.t1.CDS1Gvermi3559.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 3347259..3348677 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3559.t1.exon1Gvermi3559.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 3347259..3348677 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3559.t1.start1Gvermi3559.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 3348675..3348677 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3559.t1Gvermi3559.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 3347259..3348677 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3559.t1 ID=Gvermi3559.t1|Name=Gvermi3559.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=473bp
MRHVARLFGLMLPALIVVGAVPYSGEHITRNTIESEAEGKSIISAQGPGF
LVLAGVALCILAIDIIDLLSYRHRHNTCFPRVKIILRMIVFFILIGACLW
AMVLAFEKPSQYTYGLYLAALITAVSIGSRGFSSSSSFRLIILLVWSLMS
FSKEEKDLLRFALDKLIPLAVDSNLWTMLAFPEYLNMVSFWLRIGDRQLL
DTLFSESSWSKIMKLHQLQERETDFQRLHHSGNQSVSYAVRKLANYDIGQ
DSPSSLPFRIRVDLAIYCMDLEDDQLLMKICGPDFGQEVACATMLSQLQQ
RLPGPNAFSTTGRGYLRAALKDLLALASDENNHSIPYPVQVELVFLYLRE
VERSNRNDDTIIEQEQNLTVHDREEKDWIRKWVHRFHNPHSSDGSNAGSE
SSSPADVMKNEAEVPESTDIPGSTTETREEQAIRLVAQIYGRIRRAGTYA
DPQHLRTYRQFIPEEGQYVSAK*
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spliced messenger RNA

>Gvermi3559.t1 ID=Gvermi3559.t1|Name=Gvermi3559.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1419bp|location=Sequence derived from alignment at ScGOVlb_41:3347259..3348677- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGCATGTTGCCCGTCTTTTTGGGTTGATGCTGCCCGCTTTGATCGT
CGTCGGAGCGGTTCCATACTCCGGTGAACACATCACGCGGAATACAATTG
AGTCGGAAGCGGAAGGGAAGTCAATAATCTCTGCACAAGGCCCAGGCTTT
CTCGTTCTGGCCGGGGTCGCCCTGTGCATACTCGCTATTGACATTATTGA
CCTGCTTAGTTACCGTCACCGTCACAATACTTGCTTTCCCCGCGTCAAAA
TAATTCTTCGCATGATAGTGTTTTTCATACTGATAGGTGCCTGTCTGTGG
GCAATGGTGCTCGCATTTGAAAAGCCATCTCAGTACACTTATGGTCTGTA
CCTAGCTGCTTTGATAACTGCCGTTTCCATCGGCTCACGCGGCTTTTCCA
GCAGCTCGTCATTTAGGCTGATTATCCTTCTGGTCTGGTCTCTCATGTCT
TTTTCAAAGGAAGAGAAGGACCTACTGCGGTTCGCACTCGACAAACTCAT
CCCGCTTGCCGTCGACTCCAATTTGTGGACCATGCTGGCTTTTCCCGAAT
ATCTCAATATGGTCAGTTTCTGGTTGCGAATAGGCGATCGACAACTACTG
GACACCTTATTCAGCGAAAGCTCTTGGTCCAAAATTATGAAGCTCCACCA
GCTTCAGGAACGTGAGACAGATTTCCAACGTCTTCACCACTCTGGGAATC
AGTCCGTGAGTTATGCCGTTCGTAAACTCGCAAATTACGATATAGGGCAA
GATTCTCCAAGCAGTCTTCCTTTTCGCATCCGCGTGGATCTTGCGATATA
CTGTATGGATCTTGAGGATGATCAGCTTTTGATGAAGATTTGTGGACCCG
ACTTTGGTCAGGAAGTGGCTTGTGCTACCATGCTAAGTCAACTTCAACAA
CGGCTTCCAGGTCCCAACGCTTTTTCAACAACAGGCAGAGGCTACTTACG
TGCCGCGCTAAAAGATCTCCTAGCACTTGCGTCTGATGAAAATAACCATT
CTATTCCATATCCTGTGCAAGTTGAGCTCGTCTTTCTGTACCTAAGAGAA
GTTGAAAGATCCAATCGCAATGATGATACTATTATCGAACAAGAGCAAAA
TTTGACTGTTCACGACAGAGAAGAAAAAGACTGGATACGTAAATGGGTTC
ATCGTTTCCATAATCCTCATTCCAGCGACGGTTCAAATGCTGGAAGCGAA
TCATCCTCTCCCGCAGACGTAATGAAGAATGAAGCGGAGGTGCCGGAAAG
TACGGATATACCTGGCTCCACCACCGAGACGAGGGAGGAACAGGCCATCC
GTCTTGTGGCGCAAATCTACGGGCGCATCAGGAGAGCTGGAACGTATGCA
GATCCTCAGCACTTGAGAACCTACAGACAATTCATCCCAGAAGAGGGTCA
ATATGTATCTGCAAAATGA
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protein sequence of Gvermi3559.t1

>Gvermi3559.t1 ID=Gvermi3559.t1|Name=Gvermi3559.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=473bp
MRHVARLFGLMLPALIVVGAVPYSGEHITRNTIESEAEGKSIISAQGPGF
LVLAGVALCILAIDIIDLLSYRHRHNTCFPRVKIILRMIVFFILIGACLW
AMVLAFEKPSQYTYGLYLAALITAVSIGSRGFSSSSSFRLIILLVWSLMS
FSKEEKDLLRFALDKLIPLAVDSNLWTMLAFPEYLNMVSFWLRIGDRQLL
DTLFSESSWSKIMKLHQLQERETDFQRLHHSGNQSVSYAVRKLANYDIGQ
DSPSSLPFRIRVDLAIYCMDLEDDQLLMKICGPDFGQEVACATMLSQLQQ
RLPGPNAFSTTGRGYLRAALKDLLALASDENNHSIPYPVQVELVFLYLRE
VERSNRNDDTIIEQEQNLTVHDREEKDWIRKWVHRFHNPHSSDGSNAGSE
SSSPADVMKNEAEVPESTDIPGSTTETREEQAIRLVAQIYGRIRRAGTYA
DPQHLRTYRQFIPEEGQYVSAK*
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mRNA from alignment at ScGOVlb_41:3347259..3348677-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3559.t1 ID=Gvermi3559.t1|Name=Gvermi3559.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1419bp|location=Sequence derived from alignment at ScGOVlb_41:3347259..3348677- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGGCATGTTGCCCGTCTTTTTGGGTTGATGCTGCCCGCTTTGATCGT
CGTCGGAGCGGTTCCATACTCCGGTGAACACATCACGCGGAATACAATTG
AGTCGGAAGCGGAAGGGAAGTCAATAATCTCTGCACAAGGCCCAGGCTTT
CTCGTTCTGGCCGGGGTCGCCCTGTGCATACTCGCTATTGACATTATTGA
CCTGCTTAGTTACCGTCACCGTCACAATACTTGCTTTCCCCGCGTCAAAA
TAATTCTTCGCATGATAGTGTTTTTCATACTGATAGGTGCCTGTCTGTGG
GCAATGGTGCTCGCATTTGAAAAGCCATCTCAGTACACTTATGGTCTGTA
CCTAGCTGCTTTGATAACTGCCGTTTCCATCGGCTCACGCGGCTTTTCCA
GCAGCTCGTCATTTAGGCTGATTATCCTTCTGGTCTGGTCTCTCATGTCT
TTTTCAAAGGAAGAGAAGGACCTACTGCGGTTCGCACTCGACAAACTCAT
CCCGCTTGCCGTCGACTCCAATTTGTGGACCATGCTGGCTTTTCCCGAAT
ATCTCAATATGGTCAGTTTCTGGTTGCGAATAGGCGATCGACAACTACTG
GACACCTTATTCAGCGAAAGCTCTTGGTCCAAAATTATGAAGCTCCACCA
GCTTCAGGAACGTGAGACAGATTTCCAACGTCTTCACCACTCTGGGAATC
AGTCCGTGAGTTATGCCGTTCGTAAACTCGCAAATTACGATATAGGGCAA
GATTCTCCAAGCAGTCTTCCTTTTCGCATCCGCGTGGATCTTGCGATATA
CTGTATGGATCTTGAGGATGATCAGCTTTTGATGAAGATTTGTGGACCCG
ACTTTGGTCAGGAAGTGGCTTGTGCTACCATGCTAAGTCAACTTCAACAA
CGGCTTCCAGGTCCCAACGCTTTTTCAACAACAGGCAGAGGCTACTTACG
TGCCGCGCTAAAAGATCTCCTAGCACTTGCGTCTGATGAAAATAACCATT
CTATTCCATATCCTGTGCAAGTTGAGCTCGTCTTTCTGTACCTAAGAGAA
GTTGAAAGATCCAATCGCAATGATGATACTATTATCGAACAAGAGCAAAA
TTTGACTGTTCACGACAGAGAAGAAAAAGACTGGATACGTAAATGGGTTC
ATCGTTTCCATAATCCTCATTCCAGCGACGGTTCAAATGCTGGAAGCGAA
TCATCCTCTCCCGCAGACGTAATGAAGAATGAAGCGGAGGTGCCGGAAAG
TACGGATATACCTGGCTCCACCACCGAGACGAGGGAGGAACAGGCCATCC
GTCTTGTGGCGCAAATCTACGGGCGCATCAGGAGAGCTGGAACGTATGCA
GATCCTCAGCACTTGAGAACCTACAGACAATTCATCCCAGAAGAGGGTCA
ATATGTATCTGCAAAATGA
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Coding sequence (CDS) from alignment at ScGOVlb_41:3347259..3348677-

>Gvermi3559.t1 ID=Gvermi3559.t1|Name=Gvermi3559.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1419bp|location=Sequence derived from alignment at ScGOVlb_41:3347259..3348677- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGGCATGTTGCCCGTCTTTTTGGGTTGATGCTGCCCGCTTTGATCGT
CGTCGGAGCGGTTCCATACTCCGGTGAACACATCACGCGGAATACAATTG
AGTCGGAAGCGGAAGGGAAGTCAATAATCTCTGCACAAGGCCCAGGCTTT
CTCGTTCTGGCCGGGGTCGCCCTGTGCATACTCGCTATTGACATTATTGA
CCTGCTTAGTTACCGTCACCGTCACAATACTTGCTTTCCCCGCGTCAAAA
TAATTCTTCGCATGATAGTGTTTTTCATACTGATAGGTGCCTGTCTGTGG
GCAATGGTGCTCGCATTTGAAAAGCCATCTCAGTACACTTATGGTCTGTA
CCTAGCTGCTTTGATAACTGCCGTTTCCATCGGCTCACGCGGCTTTTCCA
GCAGCTCGTCATTTAGGCTGATTATCCTTCTGGTCTGGTCTCTCATGTCT
TTTTCAAAGGAAGAGAAGGACCTACTGCGGTTCGCACTCGACAAACTCAT
CCCGCTTGCCGTCGACTCCAATTTGTGGACCATGCTGGCTTTTCCCGAAT
ATCTCAATATGGTCAGTTTCTGGTTGCGAATAGGCGATCGACAACTACTG
GACACCTTATTCAGCGAAAGCTCTTGGTCCAAAATTATGAAGCTCCACCA
GCTTCAGGAACGTGAGACAGATTTCCAACGTCTTCACCACTCTGGGAATC
AGTCCGTGAGTTATGCCGTTCGTAAACTCGCAAATTACGATATAGGGCAA
GATTCTCCAAGCAGTCTTCCTTTTCGCATCCGCGTGGATCTTGCGATATA
CTGTATGGATCTTGAGGATGATCAGCTTTTGATGAAGATTTGTGGACCCG
ACTTTGGTCAGGAAGTGGCTTGTGCTACCATGCTAAGTCAACTTCAACAA
CGGCTTCCAGGTCCCAACGCTTTTTCAACAACAGGCAGAGGCTACTTACG
TGCCGCGCTAAAAGATCTCCTAGCACTTGCGTCTGATGAAAATAACCATT
CTATTCCATATCCTGTGCAAGTTGAGCTCGTCTTTCTGTACCTAAGAGAA
GTTGAAAGATCCAATCGCAATGATGATACTATTATCGAACAAGAGCAAAA
TTTGACTGTTCACGACAGAGAAGAAAAAGACTGGATACGTAAATGGGTTC
ATCGTTTCCATAATCCTCATTCCAGCGACGGTTCAAATGCTGGAAGCGAA
TCATCCTCTCCCGCAGACGTAATGAAGAATGAAGCGGAGGTGCCGGAAAG
TACGGATATACCTGGCTCCACCACCGAGACGAGGGAGGAACAGGCCATCC
GTCTTGTGGCGCAAATCTACGGGCGCATCAGGAGAGCTGGAACGTATGCA
GATCCTCAGCACTTGAGAACCTACAGACAATTCATCCCAGAAGAGGGTCA
ATATGTATCTGCAAAATGA
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