Gvermi3556.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3556.t1
Unique NameGvermi3556.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length291
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:3326287..3327159 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3556Gvermi3556Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 3326287..3327159 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3556.t1.start1Gvermi3556.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 3326287..3326289 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3556.t1.CDS1Gvermi3556.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 3326287..3327159 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3556.t1.exon1Gvermi3556.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 3326287..3327159 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3556.t1.stop1Gvermi3556.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 3327157..3327159 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3556.t1Gvermi3556.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 3326287..3327159 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3556.t1 ID=Gvermi3556.t1|Name=Gvermi3556.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=291bp
MLVNSVTNDECTEDLDEVSDYLENAEETLFADGEQEYPEFDEWVNHLLQT
LDDVNPNVGSVSDRQSYLSTYHSQVDRNDQDAFYLKFSIDELKQIQKSIA
HAMSSMEKISSYMLIDTGAPKSICSEAWLSHAHWKPVRTLELSSGIKPFR
FAGHPVYPKYVACLIATVVDMNGDAHLFRQVVFVLPAVPIPFLAVLQIQR
SFGFDVCLREGEGSHIRVNAWNTSIALHVSSHLWVQFNQRNVDYEPKFDW
NPIIKKALDPNMNDSNFCFPVAPLRSTQDILYQPQYPTPP*
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spliced messenger RNA

>Gvermi3556.t1 ID=Gvermi3556.t1|Name=Gvermi3556.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=873bp|location=Sequence derived from alignment at ScGOVlb_41:3326287..3327159+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGTGAACTCGGTGACCAATGATGAATGTACTGAAGATTTGGATGA
AGTCTCCGATTATCTTGAAAATGCAGAAGAAACACTCTTCGCAGACGGTG
AACAAGAATACCCAGAATTTGACGAATGGGTAAACCATCTTCTTCAAACA
TTGGATGACGTGAATCCAAACGTAGGAAGCGTATCAGATAGGCAATCATA
CCTATCAACCTACCATTCTCAAGTTGATCGCAATGATCAAGATGCTTTCT
ACTTAAAGTTTTCTATTGATGAATTGAAGCAGATACAGAAATCCATTGCC
CATGCCATGTCCTCTATGGAGAAGATTAGCAGCTACATGCTCATCGATAC
CGGTGCTCCCAAGAGTATATGCAGTGAGGCTTGGCTGTCTCACGCACATT
GGAAACCAGTGCGTACTTTGGAACTTTCGTCTGGTATCAAGCCCTTTCGA
TTTGCAGGACACCCAGTATATCCCAAGTATGTTGCATGCCTTATCGCAAC
TGTTGTGGACATGAATGGAGATGCACACTTGTTTCGACAAGTTGTGTTCG
TACTACCTGCAGTACCCATCCCATTTCTCGCTGTTCTCCAAATTCAACGA
TCATTTGGTTTCGATGTATGTTTACGTGAAGGAGAAGGCAGTCATATTCG
AGTCAACGCATGGAACACCTCAATCGCACTTCATGTCAGTTCTCACTTGT
GGGTACAGTTCAATCAACGAAATGTTGATTATGAACCCAAATTTGATTGG
AATCCTATAATCAAAAAAGCGTTGGACCCAAACATGAACGACTCCAACTT
TTGTTTCCCTGTCGCTCCGCTTCGTTCAACTCAAGATATACTGTACCAGC
CCCAATACCCGACACCACCATGA
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protein sequence of Gvermi3556.t1

>Gvermi3556.t1 ID=Gvermi3556.t1|Name=Gvermi3556.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=291bp
MLVNSVTNDECTEDLDEVSDYLENAEETLFADGEQEYPEFDEWVNHLLQT
LDDVNPNVGSVSDRQSYLSTYHSQVDRNDQDAFYLKFSIDELKQIQKSIA
HAMSSMEKISSYMLIDTGAPKSICSEAWLSHAHWKPVRTLELSSGIKPFR
FAGHPVYPKYVACLIATVVDMNGDAHLFRQVVFVLPAVPIPFLAVLQIQR
SFGFDVCLREGEGSHIRVNAWNTSIALHVSSHLWVQFNQRNVDYEPKFDW
NPIIKKALDPNMNDSNFCFPVAPLRSTQDILYQPQYPTPP*
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mRNA from alignment at ScGOVlb_41:3326287..3327159+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3556.t1 ID=Gvermi3556.t1|Name=Gvermi3556.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=873bp|location=Sequence derived from alignment at ScGOVlb_41:3326287..3327159+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTGGTGAACTCGGTGACCAATGATGAATGTACTGAAGATTTGGATGA
AGTCTCCGATTATCTTGAAAATGCAGAAGAAACACTCTTCGCAGACGGTG
AACAAGAATACCCAGAATTTGACGAATGGGTAAACCATCTTCTTCAAACA
TTGGATGACGTGAATCCAAACGTAGGAAGCGTATCAGATAGGCAATCATA
CCTATCAACCTACCATTCTCAAGTTGATCGCAATGATCAAGATGCTTTCT
ACTTAAAGTTTTCTATTGATGAATTGAAGCAGATACAGAAATCCATTGCC
CATGCCATGTCCTCTATGGAGAAGATTAGCAGCTACATGCTCATCGATAC
CGGTGCTCCCAAGAGTATATGCAGTGAGGCTTGGCTGTCTCACGCACATT
GGAAACCAGTGCGTACTTTGGAACTTTCGTCTGGTATCAAGCCCTTTCGA
TTTGCAGGACACCCAGTATATCCCAAGTATGTTGCATGCCTTATCGCAAC
TGTTGTGGACATGAATGGAGATGCACACTTGTTTCGACAAGTTGTGTTCG
TACTACCTGCAGTACCCATCCCATTTCTCGCTGTTCTCCAAATTCAACGA
TCATTTGGTTTCGATGTATGTTTACGTGAAGGAGAAGGCAGTCATATTCG
AGTCAACGCATGGAACACCTCAATCGCACTTCATGTCAGTTCTCACTTGT
GGGTACAGTTCAATCAACGAAATGTTGATTATGAACCCAAATTTGATTGG
AATCCTATAATCAAAAAAGCGTTGGACCCAAACATGAACGACTCCAACTT
TTGTTTCCCTGTCGCTCCGCTTCGTTCAACTCAAGATATACTGTACCAGC
CCCAATACCCGACACCACCATGA
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Coding sequence (CDS) from alignment at ScGOVlb_41:3326287..3327159+

>Gvermi3556.t1 ID=Gvermi3556.t1|Name=Gvermi3556.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=873bp|location=Sequence derived from alignment at ScGOVlb_41:3326287..3327159+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTGGTGAACTCGGTGACCAATGATGAATGTACTGAAGATTTGGATGA
AGTCTCCGATTATCTTGAAAATGCAGAAGAAACACTCTTCGCAGACGGTG
AACAAGAATACCCAGAATTTGACGAATGGGTAAACCATCTTCTTCAAACA
TTGGATGACGTGAATCCAAACGTAGGAAGCGTATCAGATAGGCAATCATA
CCTATCAACCTACCATTCTCAAGTTGATCGCAATGATCAAGATGCTTTCT
ACTTAAAGTTTTCTATTGATGAATTGAAGCAGATACAGAAATCCATTGCC
CATGCCATGTCCTCTATGGAGAAGATTAGCAGCTACATGCTCATCGATAC
CGGTGCTCCCAAGAGTATATGCAGTGAGGCTTGGCTGTCTCACGCACATT
GGAAACCAGTGCGTACTTTGGAACTTTCGTCTGGTATCAAGCCCTTTCGA
TTTGCAGGACACCCAGTATATCCCAAGTATGTTGCATGCCTTATCGCAAC
TGTTGTGGACATGAATGGAGATGCACACTTGTTTCGACAAGTTGTGTTCG
TACTACCTGCAGTACCCATCCCATTTCTCGCTGTTCTCCAAATTCAACGA
TCATTTGGTTTCGATGTATGTTTACGTGAAGGAGAAGGCAGTCATATTCG
AGTCAACGCATGGAACACCTCAATCGCACTTCATGTCAGTTCTCACTTGT
GGGTACAGTTCAATCAACGAAATGTTGATTATGAACCCAAATTTGATTGG
AATCCTATAATCAAAAAAGCGTTGGACCCAAACATGAACGACTCCAACTT
TTGTTTCCCTGTCGCTCCGCTTCGTTCAACTCAAGATATACTGTACCAGC
CCCAATACCCGACACCACCATGA
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