Gvermi3554.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3554.t1
Unique NameGvermi3554.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length603
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:3285447..3287317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3554Gvermi3554Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 3285447..3287317 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3554.t1Gvermi3554.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 3285447..3287317 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3554.t1.start1Gvermi3554.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 3285447..3285449 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3554.t1.CDS1Gvermi3554.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 3285447..3287014 +
Gvermi3554.t1.CDS2Gvermi3554.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 3287077..3287317 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3554.t1.exon1Gvermi3554.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 3285447..3287014 +
Gvermi3554.t1.exon2Gvermi3554.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 3287077..3287317 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3554.t1.intron1Gvermi3554.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 3287015..3287076 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3554.t1.stop1Gvermi3554.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 3287315..3287317 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3554.t1 ID=Gvermi3554.t1|Name=Gvermi3554.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=603bp
MEDNSGSYDTADRGDHQAVVANHELEDKFQKVAINLVCHGCKATGQLQLE
VDWSDPEIHAARCRSCHLVTAGRALLSQVDKFHVSTLQPPVDGTSHQQLH
LTKPLIPCPGCGEKDTLSLNGRAPTNPQLHAAKCNACGKKTTGAKLHALV
AQHMTATHNVSTDPEGTPATHGQLPSQLLRTYIDSALQNHTSRLNKRIQT
HEDVVMELQQALRTQTTPLSLGAHDRNTVPAGTPSHAAPHNYTALVNKPA
AITQELRTLRLKVAALRAENNRLIGDLRSLRPGVEPHPLQPAPVPRTADN
DDENGKQVAPAHQAGPLQPQDPNKPQQRKSWAQIAAAPGPVLKNLEPVMR
DHISQTREALKQAELAPTPPWIRNASPTALYFAGIERGPISQYRKALAHA
IPLRAVFNISFIGRGVTEIVVHENMADRLTVTLRALGYRQLNDIDPVINS
RFQDSALDTEDNIHRNASACMWRYTRQQNSPHPVAQQWYAKAARRIQARF
PAVFTDEGRPKDQQIREAQRKRRAKQYRHRLDHGLFSGDHHADPRRIRPG
NVEASPTKHWLRKNSAASLRSPNASPGPPQAKDGLHIPGTNTALGYPYGI
GG*
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spliced messenger RNA

>Gvermi3554.t1 ID=Gvermi3554.t1|Name=Gvermi3554.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1809bp|location=Sequence derived from alignment at ScGOVlb_41:3285447..3287317+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGACAACTCTGGCTCGTATGACACTGCGGACAGAGGAGACCATCA
GGCCGTGGTCGCAAACCACGAGCTTGAGGACAAATTTCAGAAGGTCGCAA
TAAACTTGGTATGCCACGGCTGTAAGGCGACGGGACAGCTCCAACTGGAG
GTAGATTGGAGCGATCCCGAGATACATGCGGCACGATGCCGCTCCTGCCA
CCTGGTAACAGCAGGGCGCGCTCTGCTCTCCCAAGTCGACAAATTCCACG
TGTCTACCCTCCAACCACCGGTGGACGGCACATCCCATCAGCAACTTCAC
CTGACCAAGCCCCTCATCCCCTGCCCGGGCTGTGGCGAAAAGGACACGCT
GTCCCTCAACGGTAGAGCCCCGACCAACCCACAGCTACATGCCGCCAAGT
GCAACGCATGCGGCAAGAAGACCACAGGCGCTAAGCTTCATGCCCTGGTG
GCGCAGCACATGACAGCAACACACAATGTCAGCACCGATCCGGAGGGAAC
ACCTGCTACGCATGGACAACTCCCCTCCCAGCTGCTCCGCACCTACATTG
ACTCGGCCCTCCAGAACCACACCTCTCGCCTAAACAAACGCATACAAACC
CATGAGGACGTCGTCATGGAACTACAACAAGCACTTCGAACCCAAACCAC
ACCCCTATCACTGGGCGCGCATGACCGCAACACAGTACCCGCTGGAACCC
CATCCCACGCAGCCCCGCACAACTACACCGCACTGGTCAACAAACCCGCC
GCCATCACCCAGGAACTCCGCACCCTACGACTTAAAGTGGCAGCCCTCCG
CGCGGAGAACAATCGCCTTATTGGAGACCTCCGCTCGCTTCGTCCCGGGG
TGGAACCTCACCCCCTACAACCCGCCCCCGTACCCCGGACCGCAGACAAC
GACGACGAGAACGGCAAGCAGGTAGCCCCGGCGCATCAGGCTGGTCCCCT
ACAACCACAGGACCCGAACAAGCCTCAGCAACGTAAGTCCTGGGCCCAGA
TTGCGGCCGCACCCGGCCCCGTGCTTAAGAACCTGGAACCTGTCATGAGA
GACCACATTAGCCAGACCCGCGAAGCACTGAAGCAAGCAGAGCTTGCGCC
CACCCCGCCCTGGATCCGCAATGCTAGCCCGACTGCACTATACTTCGCTG
GAATCGAAAGAGGACCAATCAGTCAGTATCGCAAAGCGCTCGCGCATGCC
ATACCCCTCAGAGCCGTCTTTAACATATCCTTTATCGGTAGAGGTGTCAC
GGAAATCGTAGTCCATGAGAATATGGCAGATCGACTCACTGTAACCCTCC
GAGCACTCGGATACCGCCAGCTCAACGACATAGACCCCGTCATAAATTCC
CGATTCCAGGACAGCGCGCTCGACACCGAGGACAATATCCATCGCAACGC
CTCGGCCTGCATGTGGAGATACACGCGTCAGCAGAACAGCCCGCATCCGG
TAGCCCAACAATGGTACGCGAAGGCTGCGAGGCGGATCCAGGCCAGATTC
CCCGCCGTCTTCACTGACGAAGGACGCCCAAAAGACCAGCAAATACGAGA
AGCCCAGCGTAAGCGCCGCGCCAAGCAGTACCGACACCGACTCGACCACG
GACTCTTCAGCGGAGATCACCACGCTGACCCCAGACGGATTCGTCCTGGT
AACGTAGAAGCGTCGCCGACCAAGCACTGGCTCCGCAAAAACTCGGCAGC
CTCCCTCCGATCACCAAATGCGTCCCCGGGCCCTCCGCAAGCAAAAGACG
GATTGCACATCCCCGGAACGAACACCGCCTTAGGATACCCCTATGGAATC
GGAGGATGA
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protein sequence of Gvermi3554.t1

>Gvermi3554.t1 ID=Gvermi3554.t1|Name=Gvermi3554.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=603bp
MEDNSGSYDTADRGDHQAVVANHELEDKFQKVAINLVCHGCKATGQLQLE
VDWSDPEIHAARCRSCHLVTAGRALLSQVDKFHVSTLQPPVDGTSHQQLH
LTKPLIPCPGCGEKDTLSLNGRAPTNPQLHAAKCNACGKKTTGAKLHALV
AQHMTATHNVSTDPEGTPATHGQLPSQLLRTYIDSALQNHTSRLNKRIQT
HEDVVMELQQALRTQTTPLSLGAHDRNTVPAGTPSHAAPHNYTALVNKPA
AITQELRTLRLKVAALRAENNRLIGDLRSLRPGVEPHPLQPAPVPRTADN
DDENGKQVAPAHQAGPLQPQDPNKPQQRKSWAQIAAAPGPVLKNLEPVMR
DHISQTREALKQAELAPTPPWIRNASPTALYFAGIERGPISQYRKALAHA
IPLRAVFNISFIGRGVTEIVVHENMADRLTVTLRALGYRQLNDIDPVINS
RFQDSALDTEDNIHRNASACMWRYTRQQNSPHPVAQQWYAKAARRIQARF
PAVFTDEGRPKDQQIREAQRKRRAKQYRHRLDHGLFSGDHHADPRRIRPG
NVEASPTKHWLRKNSAASLRSPNASPGPPQAKDGLHIPGTNTALGYPYGI
GG*
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mRNA from alignment at ScGOVlb_41:3285447..3287317+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3554.t1 ID=Gvermi3554.t1|Name=Gvermi3554.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1871bp|location=Sequence derived from alignment at ScGOVlb_41:3285447..3287317+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGGACAACTCTGGCTCGTATGACACTGCGGACAGAGGAGACCATCA
GGCCGTGGTCGCAAACCACGAGCTTGAGGACAAATTTCAGAAGGTCGCAA
TAAACTTGGTATGCCACGGCTGTAAGGCGACGGGACAGCTCCAACTGGAG
GTAGATTGGAGCGATCCCGAGATACATGCGGCACGATGCCGCTCCTGCCA
CCTGGTAACAGCAGGGCGCGCTCTGCTCTCCCAAGTCGACAAATTCCACG
TGTCTACCCTCCAACCACCGGTGGACGGCACATCCCATCAGCAACTTCAC
CTGACCAAGCCCCTCATCCCCTGCCCGGGCTGTGGCGAAAAGGACACGCT
GTCCCTCAACGGTAGAGCCCCGACCAACCCACAGCTACATGCCGCCAAGT
GCAACGCATGCGGCAAGAAGACCACAGGCGCTAAGCTTCATGCCCTGGTG
GCGCAGCACATGACAGCAACACACAATGTCAGCACCGATCCGGAGGGAAC
ACCTGCTACGCATGGACAACTCCCCTCCCAGCTGCTCCGCACCTACATTG
ACTCGGCCCTCCAGAACCACACCTCTCGCCTAAACAAACGCATACAAACC
CATGAGGACGTCGTCATGGAACTACAACAAGCACTTCGAACCCAAACCAC
ACCCCTATCACTGGGCGCGCATGACCGCAACACAGTACCCGCTGGAACCC
CATCCCACGCAGCCCCGCACAACTACACCGCACTGGTCAACAAACCCGCC
GCCATCACCCAGGAACTCCGCACCCTACGACTTAAAGTGGCAGCCCTCCG
CGCGGAGAACAATCGCCTTATTGGAGACCTCCGCTCGCTTCGTCCCGGGG
TGGAACCTCACCCCCTACAACCCGCCCCCGTACCCCGGACCGCAGACAAC
GACGACGAGAACGGCAAGCAGGTAGCCCCGGCGCATCAGGCTGGTCCCCT
ACAACCACAGGACCCGAACAAGCCTCAGCAACGTAAGTCCTGGGCCCAGA
TTGCGGCCGCACCCGGCCCCGTGCTTAAGAACCTGGAACCTGTCATGAGA
GACCACATTAGCCAGACCCGCGAAGCACTGAAGCAAGCAGAGCTTGCGCC
CACCCCGCCCTGGATCCGCAATGCTAGCCCGACTGCACTATACTTCGCTG
GAATCGAAAGAGGACCAATCAGTCAGTATCGCAAAGCGCTCGCGCATGCC
ATACCCCTCAGAGCCGTCTTTAACATATCCTTTATCGGTAGAGGTGTCAC
GGAAATCGTAGTCCATGAGAATATGGCAGATCGACTCACTGTAACCCTCC
GAGCACTCGGATACCGCCAGCTCAACGACATAGACCCCGTCATAAATTCC
CGATTCCAGGACAGCGCGCTCGACACCGAGGACAATATCCATCGCAACGC
CTCGGCCTGCATGTGGAGATACACGCGTCAGCAGAACAGCCCGCATCCGG
TAGCCCAACAATGGTACGCGAAGGCTGCGAGGCGGATCCAGGCCAGATTC
CCCGCCGTCTTCACTGACGAAGGACGCCCAAAAGACCAGCAAATACGAGA
AGCCCAGCGTAAGCGCCGGTAAGCACCAGTCAACACGCCACACACGGACA
CCCAGTCCCCAGATCCCGACTACGAGCCAGCGCCAAGCAGTACCGACACC
GACTCGACCACGGACTCTTCAGCGGAGATCACCACGCTGACCCCAGACGG
ATTCGTCCTGGTAACGTAGAAGCGTCGCCGACCAAGCACTGGCTCCGCAA
AAACTCGGCAGCCTCCCTCCGATCACCAAATGCGTCCCCGGGCCCTCCGC
AAGCAAAAGACGGATTGCACATCCCCGGAACGAACACCGCCTTAGGATAC
CCCTATGGAATCGGAGGATGA
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Coding sequence (CDS) from alignment at ScGOVlb_41:3285447..3287317+

>Gvermi3554.t1 ID=Gvermi3554.t1|Name=Gvermi3554.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1809bp|location=Sequence derived from alignment at ScGOVlb_41:3285447..3287317+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGGACAACTCTGGCTCGTATGACACTGCGGACAGAGGAGACCATCA
GGCCGTGGTCGCAAACCACGAGCTTGAGGACAAATTTCAGAAGGTCGCAA
TAAACTTGGTATGCCACGGCTGTAAGGCGACGGGACAGCTCCAACTGGAG
GTAGATTGGAGCGATCCCGAGATACATGCGGCACGATGCCGCTCCTGCCA
CCTGGTAACAGCAGGGCGCGCTCTGCTCTCCCAAGTCGACAAATTCCACG
TGTCTACCCTCCAACCACCGGTGGACGGCACATCCCATCAGCAACTTCAC
CTGACCAAGCCCCTCATCCCCTGCCCGGGCTGTGGCGAAAAGGACACGCT
GTCCCTCAACGGTAGAGCCCCGACCAACCCACAGCTACATGCCGCCAAGT
GCAACGCATGCGGCAAGAAGACCACAGGCGCTAAGCTTCATGCCCTGGTG
GCGCAGCACATGACAGCAACACACAATGTCAGCACCGATCCGGAGGGAAC
ACCTGCTACGCATGGACAACTCCCCTCCCAGCTGCTCCGCACCTACATTG
ACTCGGCCCTCCAGAACCACACCTCTCGCCTAAACAAACGCATACAAACC
CATGAGGACGTCGTCATGGAACTACAACAAGCACTTCGAACCCAAACCAC
ACCCCTATCACTGGGCGCGCATGACCGCAACACAGTACCCGCTGGAACCC
CATCCCACGCAGCCCCGCACAACTACACCGCACTGGTCAACAAACCCGCC
GCCATCACCCAGGAACTCCGCACCCTACGACTTAAAGTGGCAGCCCTCCG
CGCGGAGAACAATCGCCTTATTGGAGACCTCCGCTCGCTTCGTCCCGGGG
TGGAACCTCACCCCCTACAACCCGCCCCCGTACCCCGGACCGCAGACAAC
GACGACGAGAACGGCAAGCAGGTAGCCCCGGCGCATCAGGCTGGTCCCCT
ACAACCACAGGACCCGAACAAGCCTCAGCAACGTAAGTCCTGGGCCCAGA
TTGCGGCCGCACCCGGCCCCGTGCTTAAGAACCTGGAACCTGTCATGAGA
GACCACATTAGCCAGACCCGCGAAGCACTGAAGCAAGCAGAGCTTGCGCC
CACCCCGCCCTGGATCCGCAATGCTAGCCCGACTGCACTATACTTCGCTG
GAATCGAAAGAGGACCAATCAGTCAGTATCGCAAAGCGCTCGCGCATGCC
ATACCCCTCAGAGCCGTCTTTAACATATCCTTTATCGGTAGAGGTGTCAC
GGAAATCGTAGTCCATGAGAATATGGCAGATCGACTCACTGTAACCCTCC
GAGCACTCGGATACCGCCAGCTCAACGACATAGACCCCGTCATAAATTCC
CGATTCCAGGACAGCGCGCTCGACACCGAGGACAATATCCATCGCAACGC
CTCGGCCTGCATGTGGAGATACACGCGTCAGCAGAACAGCCCGCATCCGG
TAGCCCAACAATGGTACGCGAAGGCTGCGAGGCGGATCCAGGCCAGATTC
CCCGCCGTCTTCACTGACGAAGGACGCCCAAAAGACCAGCAAATACGAGA
AGCCCAGCGTAAGCGCCGCGCCAAGCAGTACCGACACCGACTCGACCACG
GACTCTTCAGCGGAGATCACCACGCTGACCCCAGACGGATTCGTCCTGGT
AACGTAGAAGCGTCGCCGACCAAGCACTGGCTCCGCAAAAACTCGGCAGC
CTCCCTCCGATCACCAAATGCGTCCCCGGGCCCTCCGCAAGCAAAAGACG
GATTGCACATCCCCGGAACGAACACCGCCTTAGGATACCCCTATGGAATC
GGAGGATGA
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