Gvermi3543.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi3543.t1
Unique Name	Gvermi3543.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	504

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_41	contig	ScGOVlb_41:3138525..3140036 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.AAC35666
Preferred name	atpA
PFAMs	ATP-synt_ab,ATP-synt_ab_C,ATP-synt_ab_N
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02111
KEGG TC	3.A.2.1
KEGG Pathway	ko00190,ko00195,ko01100,map00190,map00195,map01100
KEGG Module	M00157
Evalue	3.54e-287
EggNOG OGs	COG0056@1\|root,KOG1353@2759\|Eukaryota
EC	3.6.3.14
Description	proton-transporting ATP synthase activity, rotational mechanism
COG category	C
BRITE	ko00000,ko00001,ko00002,ko00194,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi3543	Gvermi3543	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_41 3138525..3140036 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3543.t1.start1	Gvermi3543.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_41 3138525..3138527 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3543.t1.CDS1	Gvermi3543.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_41 3138525..3140036 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3543.t1.exon1	Gvermi3543.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_41 3138525..3140036 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3543.t1.stop1	Gvermi3543.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_41 3140034..3140036 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3543.t1	Gvermi3543.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_41 3138525..3140036 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_41:3138525..3140036+
coding sequence from alignment at ScGOVlb_41:3138525..3140036+

mRNA sequence

>Gvermi3543.t1 ID=Gvermi3543.t1|Name=Gvermi3543.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=504bp
MLNIRPDEISNVIRQQIDKYEQEVEIANIGTVLQVGDGIARVYGLDEAMA
GELLEFEDTTIGIALNLESDNVGVVLMGDGRNILEGSSVKATGKIAQIPV
GDSFLGRVVDPLARPIDAKGLPSSSETRLIESYAPGIIGRQSVCEPLQTG
ITAIDSMIPIGRGQRELIIGDRQTGKTAVALDTIINQKGQDVICIYVAIG
QKASSVAQVVSSLQEKGALEYTIVVASNADDPATLQYIAPYTGAALAEYF
MYKGKATLVVYDDLTKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE
RAAKLNMDLGGGSMTALPIIETQAGDVSAYIPTNVISITDGQIFLSGDLF
NSGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFSQFA
SDLDKTTQNQLSRGQRLREILKQAQNSPIPVEEQTAIIYTGINGYLDDID
LSQVKEFIEALREDLRNSKPEFGESIRTTKKLSEEAEELLKQSIEDVKQA
FSV*

spliced messenger RNA

>Gvermi3543.t1 ID=Gvermi3543.t1|Name=Gvermi3543.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at ScGOVlb_41:3138525..3140036+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTAAATATCAGACCAGACGAAATAAGCAATGTTATACGTCAACAAAT
CGATAAATATGAACAAGAAGTTGAAATAGCTAATATAGGTACTGTTTTAC
AAGTTGGGGATGGTATTGCAAGAGTATACGGCTTAGATGAGGCTATGGCT
GGAGAGCTCCTAGAATTTGAAGATACAACTATCGGTATAGCTCTTAATTT
AGAGAGCGATAATGTTGGTGTAGTTTTAATGGGTGATGGAAGAAATATAT
TAGAAGGTAGTTCTGTAAAGGCTACAGGAAAAATTGCTCAAATACCAGTG
GGTGATTCTTTTCTTGGTCGAGTTGTAGATCCATTAGCAAGACCAATTGA
TGCGAAAGGTTTACCAAGCTCTTCAGAAACAAGATTAATTGAGTCTTATg
ctcccggtattattggtaggcaatctgtctgtgaacctttgcaaacaggt
attacagcaattgattctatgatccctatcggtcggggacaaagagagtt
aattattggtgataggcaaaccggtaaaactgcagttgctttagacacaa
ttattaatcaaAAAGGTCAAGATGTTATTTGTATTTATGTAGCTATTGGT
CAAAAAGCATCATCTGTTGCTCAAGTTGTATCTAGTTTGCAAGAGAAAGG
TGCTTTAGAATATACAATAGTTGTAGCATCTAATGCTGACGATCCAgcta
cattacaatatattgctccttatacaggtgctgcgttagcagaatatttt
atgtataaaggcaaagcaactttagttgtgtatgatgatttaaccaagca
ggctcaagcatatcgtcaaatgtctttactattacgtagaccacctggac
gcgaagcttatccaggagatgtattttatttacattctcggttattggag
agagcagctaagcttaatatggatttaggtggaggaagcatgacagcttt
acctattattgaaacacaagcaggtgatgtttcagcttatattcctacaa
atgttatttctattacagatggtcaaattttcttatctggagatttattt
aactcaggtattcgaccagctattaatgttggaatttctgtatcacgtgt
aggttctgcggctcaaattaaagctatgaaacaagttgcaggtaaattga
agttagaattagCTCAATTTGCAGAATTAGAAGCTTTTTCTCAATTTGCT
TCTGATTTAGATAAAACAACTCAAAATCAACTATCGCGTGGACAGCGTTT
AAGAGAAATTTTAAAACAAGCACAAAATTCTCCTATTCCTGTTGAAGAGC
AAACAGCGATTATCTATACAGGTATTAATGGTTATTTAGATGACATTGAT
TTATCTCAAGTTAAAGAGTTTATTGAAGCTTTAAGAGAAGATCTACGTAA
CTCAAAACCTGAATTCGGAGAAAGTATTCGAACTACTAAAAAATTAAGTG
AAGAAGCAGAAGAGTTGTTGAAGCAATCAATTGAAGATGTTAAGCAAGCA
TTTTCAGTATAA

protein sequence of Gvermi3543.t1

>Gvermi3543.t1 ID=Gvermi3543.t1|Name=Gvermi3543.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=504bp
MLNIRPDEISNVIRQQIDKYEQEVEIANIGTVLQVGDGIARVYGLDEAMA
GELLEFEDTTIGIALNLESDNVGVVLMGDGRNILEGSSVKATGKIAQIPV
GDSFLGRVVDPLARPIDAKGLPSSSETRLIESYAPGIIGRQSVCEPLQTG
ITAIDSMIPIGRGQRELIIGDRQTGKTAVALDTIINQKGQDVICIYVAIG
QKASSVAQVVSSLQEKGALEYTIVVASNADDPATLQYIAPYTGAALAEYF
MYKGKATLVVYDDLTKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE
RAAKLNMDLGGGSMTALPIIETQAGDVSAYIPTNVISITDGQIFLSGDLF
NSGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFSQFA
SDLDKTTQNQLSRGQRLREILKQAQNSPIPVEEQTAIIYTGINGYLDDID
LSQVKEFIEALREDLRNSKPEFGESIRTTKKLSEEAEELLKQSIEDVKQA
FSV*

mRNA from alignment at ScGOVlb_41:3138525..3140036+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi3543.t1 ID=Gvermi3543.t1|Name=Gvermi3543.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at ScGOVlb_41:3138525..3140036+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTAAATATCAGACCAGACGAAATAAGCAATGTTATACGTCAACAAAT
CGATAAATATGAACAAGAAGTTGAAATAGCTAATATAGGTACTGTTTTAC
AAGTTGGGGATGGTATTGCAAGAGTATACGGCTTAGATGAGGCTATGGCT
GGAGAGCTCCTAGAATTTGAAGATACAACTATCGGTATAGCTCTTAATTT
AGAGAGCGATAATGTTGGTGTAGTTTTAATGGGTGATGGAAGAAATATAT
TAGAAGGTAGTTCTGTAAAGGCTACAGGAAAAATTGCTCAAATACCAGTG
GGTGATTCTTTTCTTGGTCGAGTTGTAGATCCATTAGCAAGACCAATTGA
TGCGAAAGGTTTACCAAGCTCTTCAGAAACAAGATTAATTGAGTCTTATg
ctcccggtattattggtaggcaatctgtctgtgaacctttgcaaacaggt
attacagcaattgattctatgatccctatcggtcggggacaaagagagtt
aattattggtgataggcaaaccggtaaaactgcagttgctttagacacaa
ttattaatcaaAAAGGTCAAGATGTTATTTGTATTTATGTAGCTATTGGT
CAAAAAGCATCATCTGTTGCTCAAGTTGTATCTAGTTTGCAAGAGAAAGG
TGCTTTAGAATATACAATAGTTGTAGCATCTAATGCTGACGATCCAgcta
cattacaatatattgctccttatacaggtgctgcgttagcagaatatttt
atgtataaaggcaaagcaactttagttgtgtatgatgatttaaccaagca
ggctcaagcatatcgtcaaatgtctttactattacgtagaccacctggac
gcgaagcttatccaggagatgtattttatttacattctcggttattggag
agagcagctaagcttaatatggatttaggtggaggaagcatgacagcttt
acctattattgaaacacaagcaggtgatgtttcagcttatattcctacaa
atgttatttctattacagatggtcaaattttcttatctggagatttattt
aactcaggtattcgaccagctattaatgttggaatttctgtatcacgtgt
aggttctgcggctcaaattaaagctatgaaacaagttgcaggtaaattga
agttagaattagCTCAATTTGCAGAATTAGAAGCTTTTTCTCAATTTGCT
TCTGATTTAGATAAAACAACTCAAAATCAACTATCGCGTGGACAGCGTTT
AAGAGAAATTTTAAAACAAGCACAAAATTCTCCTATTCCTGTTGAAGAGC
AAACAGCGATTATCTATACAGGTATTAATGGTTATTTAGATGACATTGAT
TTATCTCAAGTTAAAGAGTTTATTGAAGCTTTAAGAGAAGATCTACGTAA
CTCAAAACCTGAATTCGGAGAAAGTATTCGAACTACTAAAAAATTAAGTG
AAGAAGCAGAAGAGTTGTTGAAGCAATCAATTGAAGATGTTAAGCAAGCA
TTTTCAGTATAA

Coding sequence (CDS) from alignment at ScGOVlb_41:3138525..3140036+

>Gvermi3543.t1 ID=Gvermi3543.t1|Name=Gvermi3543.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1512bp|location=Sequence derived from alignment at ScGOVlb_41:3138525..3140036+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTAAATATCAGACCAGACGAAATAAGCAATGTTATACGTCAACAAAT
CGATAAATATGAACAAGAAGTTGAAATAGCTAATATAGGTACTGTTTTAC
AAGTTGGGGATGGTATTGCAAGAGTATACGGCTTAGATGAGGCTATGGCT
GGAGAGCTCCTAGAATTTGAAGATACAACTATCGGTATAGCTCTTAATTT
AGAGAGCGATAATGTTGGTGTAGTTTTAATGGGTGATGGAAGAAATATAT
TAGAAGGTAGTTCTGTAAAGGCTACAGGAAAAATTGCTCAAATACCAGTG
GGTGATTCTTTTCTTGGTCGAGTTGTAGATCCATTAGCAAGACCAATTGA
TGCGAAAGGTTTACCAAGCTCTTCAGAAACAAGATTAATTGAGTCTTATg
ctcccggtattattggtaggcaatctgtctgtgaacctttgcaaacaggt
attacagcaattgattctatgatccctatcggtcggggacaaagagagtt
aattattggtgataggcaaaccggtaaaactgcagttgctttagacacaa
ttattaatcaaAAAGGTCAAGATGTTATTTGTATTTATGTAGCTATTGGT
CAAAAAGCATCATCTGTTGCTCAAGTTGTATCTAGTTTGCAAGAGAAAGG
TGCTTTAGAATATACAATAGTTGTAGCATCTAATGCTGACGATCCAgcta
cattacaatatattgctccttatacaggtgctgcgttagcagaatatttt
atgtataaaggcaaagcaactttagttgtgtatgatgatttaaccaagca
ggctcaagcatatcgtcaaatgtctttactattacgtagaccacctggac
gcgaagcttatccaggagatgtattttatttacattctcggttattggag
agagcagctaagcttaatatggatttaggtggaggaagcatgacagcttt
acctattattgaaacacaagcaggtgatgtttcagcttatattcctacaa
atgttatttctattacagatggtcaaattttcttatctggagatttattt
aactcaggtattcgaccagctattaatgttggaatttctgtatcacgtgt
aggttctgcggctcaaattaaagctatgaaacaagttgcaggtaaattga
agttagaattagCTCAATTTGCAGAATTAGAAGCTTTTTCTCAATTTGCT
TCTGATTTAGATAAAACAACTCAAAATCAACTATCGCGTGGACAGCGTTT
AAGAGAAATTTTAAAACAAGCACAAAATTCTCCTATTCCTGTTGAAGAGC
AAACAGCGATTATCTATACAGGTATTAATGGTTATTTAGATGACATTGAT
TTATCTCAAGTTAAAGAGTTTATTGAAGCTTTAAGAGAAGATCTACGTAA
CTCAAAACCTGAATTCGGAGAAAGTATTCGAACTACTAAAAAATTAAGTG
AAGAAGCAGAAGAGTTGTTGAAGCAATCAATTGAAGATGTTAAGCAAGCA
TTTTCAGTATAA