Gvermi3533.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3533.t1
Unique NameGvermi3533.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length432
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:3091346..3092641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog406817.XNC1_3115
Preferred nameleuC
PFAMsAconitase
Max annot lvl1236|Gammaproteobacteria
KEGG rclassRC00497,RC00976,RC00977,RC01041,RC01046,RC03072
KEGG koko:K01703
KEGG ReactionR03896,R03898,R03968,R04001,R08620,R08624,R08628,R08634,R08641,R08645,R10170
KEGG Pathwayko00290,ko00660,ko00966,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map00966,map01100,map01110,map01210,map01230
KEGG ModuleM00432,M00535
Evalue2.82e-194
EggNOG OGsCOG0065@1|root,COG0065@2|Bacteria,1MVYR@1224|Proteobacteria,1RMF6@1236|Gammaproteobacteria
EC4.2.1.33,4.2.1.35
DescriptionCatalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
COG categoryE
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3533Gvermi3533Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 3091346..3092641 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3533.t1.stop1Gvermi3533.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 3091346..3091348 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3533.t1.CDS1Gvermi3533.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 3091346..3092641 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3533.t1.exon1Gvermi3533.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 3091346..3092641 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3533.t1.start1Gvermi3533.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 3092639..3092641 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3533.t1Gvermi3533.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 3091346..3092641 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3533.t1 ID=Gvermi3533.t1|Name=Gvermi3533.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=432bp
MSEKILARASQKSNVQAGEIIWSKVNVLMTHDPCSPGVISIFKKEFGNQA
KIWDTKGHVMIPDHFIFTSDAKANANIRMMREFAQEQGHQYFYDPHSENY
KGVCHIALAQEGHNRPGEVLVGTDSHTVTSGAFGTFAIGVGNTDAAFILG
MGEILLRVPDTIKVIFHGELGSNLMAKDLILLLLKDLTTQGATYQSIEFC
GETIDNMNIEDRMTLCNMVIEAGAKNGIIVPNENTLQYINKRSNIKNFEV
ITPDKSAKYTRVLEYDVTNMQPQIAKPHSPDNVDDIDNLEGEKIDRAYIG
SCTGGKSSDFYAAAKILKNKKVSIDTFGVPATREVFYDIINQKIDNLSVY
EILVNAGVYMTTEPSCAACCGGPIDTFGRVNDTMSVMSTTNRNFSGRMGA
KSAKIYLGSPYSVASTAITGYITNPKAFLNY*
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spliced messenger RNA

>Gvermi3533.t1 ID=Gvermi3533.t1|Name=Gvermi3533.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1296bp|location=Sequence derived from alignment at ScGOVlb_41:3091346..3092641- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGAAAAAATATTAGCCAGAGCAAGTCAAAAAAGTAATGTTCAAGC
AGGCGAAATAATATGGTCTAAAGTAAATGTTCTAATGACACATGATCCAT
GTTCACCAGGGGTTATCAGCATTTTCAAAAAAGAATTTGGCAATCAAGCA
AAAATTTGGGATACAAAAGGTCACGTAATGATTCCTGATCACTTTATTTT
TACATCTGATGCAAAGGCAAATGCTAATATTCGAATGATGAGAGAATTTG
CACAAGAACAAGGTCATCAATATTTTTATGATCCACATAGCGAAAATTAT
AAAGGAGTATGTCATATTGCTTTAGCACAAGAAGGACATAACAGACCAGG
GGAAGTATTAGTGGGTACAGATTCACATACTGTAACTAGTGGTGCCTTTG
GAACATTTGCTATAGGCGTAGGTAATACAGATGCAGCATTCATCTTAGGA
ATGGGAGAAATATTATTACGCGTTCCTGATACAATAAAAGTGATTTTTCA
TGGTGAACTAGGATCAAATCTTATGGCAAAAGATTTAATCTTATTACTTC
TGAAAGACCTAACTACACAAGGAGCAACATATCAATCAATTGAGTTTTGT
GGCGAAACTATAGATAATATGAATATTGAAGATCGAATGACTTTATGTAA
CATGGTTATTGAAGCAGGAGCAAAAAATGGTATCATTGTTCCTAATGAAA
ATACACTGCAGTATATTAATAAAAGATCCAATATTAAAAATTTTGAAGTT
ATAACTCCTGACAAATCAGCTAAATACACAAGAGTTTTAGAGTATGATGT
TACTAACATGCAACCTCAAATTGCCAAACCACATTCACCCGACAATGTGG
ATGATATAGATAATCTTGAAGGAGAGAAAATAGATCGTGCCTATATAGGA
AGCTGTACTGGAGGTAAAAGCTCAGATTTCTATGCAGCTGCAAAAATTTT
AAAAAACAAAAAAGTGTCAATTGATACTTTTGGTGTACCAGCTACACGTG
AAGTATTTTATGATATTATTAATCAAAAGATTGATAATCTATCAGTCTAT
GAGATTTTAGTTAACGCGGGAGTATATATGACTACTGAACCGAGCTGTGC
AGCCTGCTGTGGTGGACCAATAGATACTTTTGGAAGAGTGAATGATACTA
TGTCTGTAATGTCAACAACAAATAGAAATTTCAGTGGTCGCATGGGAGCT
AAATCTGCCAAAATTTATCTTGGCTCTCCTTATTCAGTTGCTTCAACAGC
AATTACAGGATATATTACTAACCCTAAAGCTTTTCTAAACTATTAA
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protein sequence of Gvermi3533.t1

>Gvermi3533.t1 ID=Gvermi3533.t1|Name=Gvermi3533.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=432bp
MSEKILARASQKSNVQAGEIIWSKVNVLMTHDPCSPGVISIFKKEFGNQA
KIWDTKGHVMIPDHFIFTSDAKANANIRMMREFAQEQGHQYFYDPHSENY
KGVCHIALAQEGHNRPGEVLVGTDSHTVTSGAFGTFAIGVGNTDAAFILG
MGEILLRVPDTIKVIFHGELGSNLMAKDLILLLLKDLTTQGATYQSIEFC
GETIDNMNIEDRMTLCNMVIEAGAKNGIIVPNENTLQYINKRSNIKNFEV
ITPDKSAKYTRVLEYDVTNMQPQIAKPHSPDNVDDIDNLEGEKIDRAYIG
SCTGGKSSDFYAAAKILKNKKVSIDTFGVPATREVFYDIINQKIDNLSVY
EILVNAGVYMTTEPSCAACCGGPIDTFGRVNDTMSVMSTTNRNFSGRMGA
KSAKIYLGSPYSVASTAITGYITNPKAFLNY*
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mRNA from alignment at ScGOVlb_41:3091346..3092641-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3533.t1 ID=Gvermi3533.t1|Name=Gvermi3533.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1296bp|location=Sequence derived from alignment at ScGOVlb_41:3091346..3092641- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTGAAAAAATATTAGCCAGAGCAAGTCAAAAAAGTAATGTTCAAGC
AGGCGAAATAATATGGTCTAAAGTAAATGTTCTAATGACACATGATCCAT
GTTCACCAGGGGTTATCAGCATTTTCAAAAAAGAATTTGGCAATCAAGCA
AAAATTTGGGATACAAAAGGTCACGTAATGATTCCTGATCACTTTATTTT
TACATCTGATGCAAAGGCAAATGCTAATATTCGAATGATGAGAGAATTTG
CACAAGAACAAGGTCATCAATATTTTTATGATCCACATAGCGAAAATTAT
AAAGGAGTATGTCATATTGCTTTAGCACAAGAAGGACATAACAGACCAGG
GGAAGTATTAGTGGGTACAGATTCACATACTGTAACTAGTGGTGCCTTTG
GAACATTTGCTATAGGCGTAGGTAATACAGATGCAGCATTCATCTTAGGA
ATGGGAGAAATATTATTACGCGTTCCTGATACAATAAAAGTGATTTTTCA
TGGTGAACTAGGATCAAATCTTATGGCAAAAGATTTAATCTTATTACTTC
TGAAAGACCTAACTACACAAGGAGCAACATATCAATCAATTGAGTTTTGT
GGCGAAACTATAGATAATATGAATATTGAAGATCGAATGACTTTATGTAA
CATGGTTATTGAAGCAGGAGCAAAAAATGGTATCATTGTTCCTAATGAAA
ATACACTGCAGTATATTAATAAAAGATCCAATATTAAAAATTTTGAAGTT
ATAACTCCTGACAAATCAGCTAAATACACAAGAGTTTTAGAGTATGATGT
TACTAACATGCAACCTCAAATTGCCAAACCACATTCACCCGACAATGTGG
ATGATATAGATAATCTTGAAGGAGAGAAAATAGATCGTGCCTATATAGGA
AGCTGTACTGGAGGTAAAAGCTCAGATTTCTATGCAGCTGCAAAAATTTT
AAAAAACAAAAAAGTGTCAATTGATACTTTTGGTGTACCAGCTACACGTG
AAGTATTTTATGATATTATTAATCAAAAGATTGATAATCTATCAGTCTAT
GAGATTTTAGTTAACGCGGGAGTATATATGACTACTGAACCGAGCTGTGC
AGCCTGCTGTGGTGGACCAATAGATACTTTTGGAAGAGTGAATGATACTA
TGTCTGTAATGTCAACAACAAATAGAAATTTCAGTGGTCGCATGGGAGCT
AAATCTGCCAAAATTTATCTTGGCTCTCCTTATTCAGTTGCTTCAACAGC
AATTACAGGATATATTACTAACCCTAAAGCTTTTCTAAACTATTAA
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Coding sequence (CDS) from alignment at ScGOVlb_41:3091346..3092641-

>Gvermi3533.t1 ID=Gvermi3533.t1|Name=Gvermi3533.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1296bp|location=Sequence derived from alignment at ScGOVlb_41:3091346..3092641- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTGAAAAAATATTAGCCAGAGCAAGTCAAAAAAGTAATGTTCAAGC
AGGCGAAATAATATGGTCTAAAGTAAATGTTCTAATGACACATGATCCAT
GTTCACCAGGGGTTATCAGCATTTTCAAAAAAGAATTTGGCAATCAAGCA
AAAATTTGGGATACAAAAGGTCACGTAATGATTCCTGATCACTTTATTTT
TACATCTGATGCAAAGGCAAATGCTAATATTCGAATGATGAGAGAATTTG
CACAAGAACAAGGTCATCAATATTTTTATGATCCACATAGCGAAAATTAT
AAAGGAGTATGTCATATTGCTTTAGCACAAGAAGGACATAACAGACCAGG
GGAAGTATTAGTGGGTACAGATTCACATACTGTAACTAGTGGTGCCTTTG
GAACATTTGCTATAGGCGTAGGTAATACAGATGCAGCATTCATCTTAGGA
ATGGGAGAAATATTATTACGCGTTCCTGATACAATAAAAGTGATTTTTCA
TGGTGAACTAGGATCAAATCTTATGGCAAAAGATTTAATCTTATTACTTC
TGAAAGACCTAACTACACAAGGAGCAACATATCAATCAATTGAGTTTTGT
GGCGAAACTATAGATAATATGAATATTGAAGATCGAATGACTTTATGTAA
CATGGTTATTGAAGCAGGAGCAAAAAATGGTATCATTGTTCCTAATGAAA
ATACACTGCAGTATATTAATAAAAGATCCAATATTAAAAATTTTGAAGTT
ATAACTCCTGACAAATCAGCTAAATACACAAGAGTTTTAGAGTATGATGT
TACTAACATGCAACCTCAAATTGCCAAACCACATTCACCCGACAATGTGG
ATGATATAGATAATCTTGAAGGAGAGAAAATAGATCGTGCCTATATAGGA
AGCTGTACTGGAGGTAAAAGCTCAGATTTCTATGCAGCTGCAAAAATTTT
AAAAAACAAAAAAGTGTCAATTGATACTTTTGGTGTACCAGCTACACGTG
AAGTATTTTATGATATTATTAATCAAAAGATTGATAATCTATCAGTCTAT
GAGATTTTAGTTAACGCGGGAGTATATATGACTACTGAACCGAGCTGTGC
AGCCTGCTGTGGTGGACCAATAGATACTTTTGGAAGAGTGAATGATACTA
TGTCTGTAATGTCAACAACAAATAGAAATTTCAGTGGTCGCATGGGAGCT
AAATCTGCCAAAATTTATCTTGGCTCTCCTTATTCAGTTGCTTCAACAGC
AATTACAGGATATATTACTAACCCTAAAGCTTTTCTAAACTATTAA
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