Gvermi3531.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi3531.t1
Unique Name	Gvermi3531.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	563

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_41	contig	ScGOVlb_41:3084726..3086414 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.AAC35702
Preferred name	dnaK
PFAMs	HSP70
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03283
KEGG TC	1.A.33.1
KEGG Pathway	ko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG Module	M00353,M00355
GOs	GO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006605,GO:0006810,GO:0006886,GO:0006950,GO:0008104,GO:0008144,GO:0008150,GO:0009266,GO:0009408,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009941,GO:0010035,GO:0010038,GO:0015031,GO:0015833,GO:0017076,GO:0030554,GO:0031967,GO:0031975,GO:0032553,GO:0032555,GO:0032559,GO:0033036,GO:0033365,GO:0034613,GO:0035639,GO:0036094,GO:0042221,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045036,GO:0045184,GO:0046686,GO:0046907,GO:0048046,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0072596,GO:0072598,GO:0097159,GO:0097367,GO:1901265,GO:1901363
Evalue	1.36e-288
EggNOG OGs	COG0443@1\|root,KOG0102@2759\|Eukaryota
Description	unfolded protein binding
COG category	O
BRITE	ko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi3531	Gvermi3531	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_41 3084726..3086414 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3531.t1.start1	Gvermi3531.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_41 3084726..3084728 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3531.t1.CDS1	Gvermi3531.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_41 3084726..3086414 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3531.t1.exon1	Gvermi3531.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_41 3084726..3086414 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3531.t1.stop1	Gvermi3531.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_41 3086412..3086414 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3531.t1	Gvermi3531.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_41 3084726..3086414 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_41:3084726..3086414+
coding sequence from alignment at ScGOVlb_41:3084726..3086414+

mRNA sequence

>Gvermi3531.t1 ID=Gvermi3531.t1|Name=Gvermi3531.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=563bp
MNPENTFYSVKRFIGRKKDELGNELRQSSYNVKTDSNFNVKLQCPALGKD
FAPEEISAQVLRKLVEDASTYLGQQVTQAVITVPAYFNDSQRQATKDAGQ
IAGLDVLRIINEPTAASLSYGLDKKNNETILVFDLGGGTFDVSILEVGDG
VFEVLSTSGDTHLGGDDFDRKIVEWLIHEFDNDEGINLGKDRQALQRLTE
AAEKAKMELSSLSQTDINLPFITSTDTGPKHLEKNITRAKFEYLCQDLIN
RCEIPVNNALKDAQLSSSDIDEIVLVGGSTRIPAIQQLVKKIIGKDPNQS
VNPDEVVAIGAAVQAGVLAGEVKDILLLDVTPLSLGVETLGGVMTKIIDR
NTTVPTKKSEIFSTAVDNQPNVEIHVLQGEREFTKDNKSLGTFRLDGIMP
APRGVPQIEVIFDIDANGILSVKAKDKGTGKEQSITITGASTLPKEEVEK
LVKEAEENSELDKQKREQIDLKNQADALCYQSQNQINELKDKINEDDKQR
VQKLIDSLKQSIQQDNYVEIKNIQNQLQQAMMNIGKQVYSSTQEENKKTE
DDSVIDTKSKEA*

spliced messenger RNA

>Gvermi3531.t1 ID=Gvermi3531.t1|Name=Gvermi3531.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1689bp|location=Sequence derived from alignment at ScGOVlb_41:3084726..3086414+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCCAGAAAACACTTTCTATTCTGTTAAAAGATTTATTGGGCGCAA
AAAAGACGAATTAGGTAATGAATTACGACAGTCATCTTATAATGTAAAAA
CAGACAGTAATTTTAATGTAAAGTTACAGTGTCCAGCTTTAGGTAAAGAT
TTTGCTCCTGAAGAAATATCTGCGCAAGTTTTACGTAAATTAGTTGAAGA
TGCTAGTACATATTTAGGTCAACAAGTTACTCAAGCAGTTATAACTGTCC
CCGCTTATTTTAATGATTCGCAACGTCAAGCAACAAAAGATGCTGGACAG
ATTGCTGGTTTAGATGTTCTAAGAATTATTAATGAACCTACAGCAGCATC
CTTATCTTATGGTTTAGACAAAAAAAATAATGAAACTATTTTGGTATTTG
ACCTTGGAGGAGGTACGTTTGATGTTTCTATTTTAGAAGTGGGCGATGGT
GTTTTTGAAGTTTTATCTACATCTGGAGATACTCATTTGGGTGGAGATGA
TTTTGATAGAAAAATTGTTGAATGGTTAATTCATGAGTTTGATAATGATG
AGGGAATTAATTTAGGCAAAGATAGGCAAGCTCTGCAACGTTTAACTGAA
GCTGCTGAAAAAGCTAAGATGGAATTATCTAGTTTATCTCAAACAGATAT
TAACTTACCTTTTATTACTTCTACCGATACAGGCCCCAAACATTTAGAAA
AAAATATAACTAGAGCTAAATTTGAATATTTATGTCAAGATTTAATTAAT
CGTTGCGAAATACCTGTTAATAATGCTTTGAAAGATGCACAATTATCATC
AAGCGATATTGATGAGATTGTTTTAGTTGGTGGTTCTACAAGAATTCCTG
CTATTCAACAACTAGTTAAAAAAATAATAGGTAAAGATCCAAATCAAAGT
GTTAATCCTGATGAAGTAGTTGCAATTGGAGCAGCTGTTCAAGCTGGTGT
TTTAGCAGGTGAGGTTAAAGATATACTTCTACTAGATGTGACGCCTTTAT
CTTTAGGCGTAGAAACTCTTGGAGGAGTAATGACTAAGATAATTGACCGT
AATACTACAGTACCTACAAAAAAATCTGAGATTTTCTCAACGGCTGTTGA
TAATCAACCTAATGTTGAGATTCATGTTCTACAGGGAGAAAGAGAGTTTA
CTAAAGACAATAAAAGCTTAGGTACTTTCAGATTAGATGGTATTATGCCT
GCACCTAGAGGTGTACCACAGATAGAGGTAATATTTGATATAGATGCTAA
TGGTATATTGTCTGTTAAGGCTAAAGATAAAGGTACAGGTAAAGAACAAT
CGATTACTATAACCGGTGCATCTACTTTACCTAAAGAAGAAGTAGAGAAA
CTAGTTAAAGAAGCAGAAGAAAATTCAGAGCTCGATAAACAAAAACGAGA
ACAAATAGATCTTAAAAATCAAGCAGATGCTTTATGTTATCAATCTCAAA
ATCAAATTAATGAATTAAAAGATAAAATTAATGAAGATGATAAGCAAAGG
GTACAAAAGTTAATTGATTCTTTAAAGCAGTCTATTCAGCAGGACAATTA
TGTAGAAATTAAAAATATACAAAATCAATTGCAACAAGCAATGATGAATA
TAGGTAAGCAAGTTTATAGCTCAACTCAAGAAGAAAATAAAAAAACAGAA
GATGATTCTGTTATAGATACTAAATCTAAGGAAGCTTAA

protein sequence of Gvermi3531.t1

>Gvermi3531.t1 ID=Gvermi3531.t1|Name=Gvermi3531.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=563bp
MNPENTFYSVKRFIGRKKDELGNELRQSSYNVKTDSNFNVKLQCPALGKD
FAPEEISAQVLRKLVEDASTYLGQQVTQAVITVPAYFNDSQRQATKDAGQ
IAGLDVLRIINEPTAASLSYGLDKKNNETILVFDLGGGTFDVSILEVGDG
VFEVLSTSGDTHLGGDDFDRKIVEWLIHEFDNDEGINLGKDRQALQRLTE
AAEKAKMELSSLSQTDINLPFITSTDTGPKHLEKNITRAKFEYLCQDLIN
RCEIPVNNALKDAQLSSSDIDEIVLVGGSTRIPAIQQLVKKIIGKDPNQS
VNPDEVVAIGAAVQAGVLAGEVKDILLLDVTPLSLGVETLGGVMTKIIDR
NTTVPTKKSEIFSTAVDNQPNVEIHVLQGEREFTKDNKSLGTFRLDGIMP
APRGVPQIEVIFDIDANGILSVKAKDKGTGKEQSITITGASTLPKEEVEK
LVKEAEENSELDKQKREQIDLKNQADALCYQSQNQINELKDKINEDDKQR
VQKLIDSLKQSIQQDNYVEIKNIQNQLQQAMMNIGKQVYSSTQEENKKTE
DDSVIDTKSKEA*

mRNA from alignment at ScGOVlb_41:3084726..3086414+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi3531.t1 ID=Gvermi3531.t1|Name=Gvermi3531.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1689bp|location=Sequence derived from alignment at ScGOVlb_41:3084726..3086414+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATCCAGAAAACACTTTCTATTCTGTTAAAAGATTTATTGGGCGCAA
AAAAGACGAATTAGGTAATGAATTACGACAGTCATCTTATAATGTAAAAA
CAGACAGTAATTTTAATGTAAAGTTACAGTGTCCAGCTTTAGGTAAAGAT
TTTGCTCCTGAAGAAATATCTGCGCAAGTTTTACGTAAATTAGTTGAAGA
TGCTAGTACATATTTAGGTCAACAAGTTACTCAAGCAGTTATAACTGTCC
CCGCTTATTTTAATGATTCGCAACGTCAAGCAACAAAAGATGCTGGACAG
ATTGCTGGTTTAGATGTTCTAAGAATTATTAATGAACCTACAGCAGCATC
CTTATCTTATGGTTTAGACAAAAAAAATAATGAAACTATTTTGGTATTTG
ACCTTGGAGGAGGTACGTTTGATGTTTCTATTTTAGAAGTGGGCGATGGT
GTTTTTGAAGTTTTATCTACATCTGGAGATACTCATTTGGGTGGAGATGA
TTTTGATAGAAAAATTGTTGAATGGTTAATTCATGAGTTTGATAATGATG
AGGGAATTAATTTAGGCAAAGATAGGCAAGCTCTGCAACGTTTAACTGAA
GCTGCTGAAAAAGCTAAGATGGAATTATCTAGTTTATCTCAAACAGATAT
TAACTTACCTTTTATTACTTCTACCGATACAGGCCCCAAACATTTAGAAA
AAAATATAACTAGAGCTAAATTTGAATATTTATGTCAAGATTTAATTAAT
CGTTGCGAAATACCTGTTAATAATGCTTTGAAAGATGCACAATTATCATC
AAGCGATATTGATGAGATTGTTTTAGTTGGTGGTTCTACAAGAATTCCTG
CTATTCAACAACTAGTTAAAAAAATAATAGGTAAAGATCCAAATCAAAGT
GTTAATCCTGATGAAGTAGTTGCAATTGGAGCAGCTGTTCAAGCTGGTGT
TTTAGCAGGTGAGGTTAAAGATATACTTCTACTAGATGTGACGCCTTTAT
CTTTAGGCGTAGAAACTCTTGGAGGAGTAATGACTAAGATAATTGACCGT
AATACTACAGTACCTACAAAAAAATCTGAGATTTTCTCAACGGCTGTTGA
TAATCAACCTAATGTTGAGATTCATGTTCTACAGGGAGAAAGAGAGTTTA
CTAAAGACAATAAAAGCTTAGGTACTTTCAGATTAGATGGTATTATGCCT
GCACCTAGAGGTGTACCACAGATAGAGGTAATATTTGATATAGATGCTAA
TGGTATATTGTCTGTTAAGGCTAAAGATAAAGGTACAGGTAAAGAACAAT
CGATTACTATAACCGGTGCATCTACTTTACCTAAAGAAGAAGTAGAGAAA
CTAGTTAAAGAAGCAGAAGAAAATTCAGAGCTCGATAAACAAAAACGAGA
ACAAATAGATCTTAAAAATCAAGCAGATGCTTTATGTTATCAATCTCAAA
ATCAAATTAATGAATTAAAAGATAAAATTAATGAAGATGATAAGCAAAGG
GTACAAAAGTTAATTGATTCTTTAAAGCAGTCTATTCAGCAGGACAATTA
TGTAGAAATTAAAAATATACAAAATCAATTGCAACAAGCAATGATGAATA
TAGGTAAGCAAGTTTATAGCTCAACTCAAGAAGAAAATAAAAAAACAGAA
GATGATTCTGTTATAGATACTAAATCTAAGGAAGCTTAA

Coding sequence (CDS) from alignment at ScGOVlb_41:3084726..3086414+

>Gvermi3531.t1 ID=Gvermi3531.t1|Name=Gvermi3531.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1689bp|location=Sequence derived from alignment at ScGOVlb_41:3084726..3086414+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATCCAGAAAACACTTTCTATTCTGTTAAAAGATTTATTGGGCGCAA
AAAAGACGAATTAGGTAATGAATTACGACAGTCATCTTATAATGTAAAAA
CAGACAGTAATTTTAATGTAAAGTTACAGTGTCCAGCTTTAGGTAAAGAT
TTTGCTCCTGAAGAAATATCTGCGCAAGTTTTACGTAAATTAGTTGAAGA
TGCTAGTACATATTTAGGTCAACAAGTTACTCAAGCAGTTATAACTGTCC
CCGCTTATTTTAATGATTCGCAACGTCAAGCAACAAAAGATGCTGGACAG
ATTGCTGGTTTAGATGTTCTAAGAATTATTAATGAACCTACAGCAGCATC
CTTATCTTATGGTTTAGACAAAAAAAATAATGAAACTATTTTGGTATTTG
ACCTTGGAGGAGGTACGTTTGATGTTTCTATTTTAGAAGTGGGCGATGGT
GTTTTTGAAGTTTTATCTACATCTGGAGATACTCATTTGGGTGGAGATGA
TTTTGATAGAAAAATTGTTGAATGGTTAATTCATGAGTTTGATAATGATG
AGGGAATTAATTTAGGCAAAGATAGGCAAGCTCTGCAACGTTTAACTGAA
GCTGCTGAAAAAGCTAAGATGGAATTATCTAGTTTATCTCAAACAGATAT
TAACTTACCTTTTATTACTTCTACCGATACAGGCCCCAAACATTTAGAAA
AAAATATAACTAGAGCTAAATTTGAATATTTATGTCAAGATTTAATTAAT
CGTTGCGAAATACCTGTTAATAATGCTTTGAAAGATGCACAATTATCATC
AAGCGATATTGATGAGATTGTTTTAGTTGGTGGTTCTACAAGAATTCCTG
CTATTCAACAACTAGTTAAAAAAATAATAGGTAAAGATCCAAATCAAAGT
GTTAATCCTGATGAAGTAGTTGCAATTGGAGCAGCTGTTCAAGCTGGTGT
TTTAGCAGGTGAGGTTAAAGATATACTTCTACTAGATGTGACGCCTTTAT
CTTTAGGCGTAGAAACTCTTGGAGGAGTAATGACTAAGATAATTGACCGT
AATACTACAGTACCTACAAAAAAATCTGAGATTTTCTCAACGGCTGTTGA
TAATCAACCTAATGTTGAGATTCATGTTCTACAGGGAGAAAGAGAGTTTA
CTAAAGACAATAAAAGCTTAGGTACTTTCAGATTAGATGGTATTATGCCT
GCACCTAGAGGTGTACCACAGATAGAGGTAATATTTGATATAGATGCTAA
TGGTATATTGTCTGTTAAGGCTAAAGATAAAGGTACAGGTAAAGAACAAT
CGATTACTATAACCGGTGCATCTACTTTACCTAAAGAAGAAGTAGAGAAA
CTAGTTAAAGAAGCAGAAGAAAATTCAGAGCTCGATAAACAAAAACGAGA
ACAAATAGATCTTAAAAATCAAGCAGATGCTTTATGTTATCAATCTCAAA
ATCAAATTAATGAATTAAAAGATAAAATTAATGAAGATGATAAGCAAAGG
GTACAAAAGTTAATTGATTCTTTAAAGCAGTCTATTCAGCAGGACAATTA
TGTAGAAATTAAAAATATACAAAATCAATTGCAACAAGCAATGATGAATA
TAGGTAAGCAAGTTTATAGCTCAACTCAAGAAGAAAATAAAAAAACAGAA
GATGATTCTGTTATAGATACTAAATCTAAGGAAGCTTAA