Gvermi3499.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3499.t1
Unique NameGvermi3499.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length256
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:2477506..2478369 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3499Gvermi3499Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 2477506..2478369 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3499.t1Gvermi3499.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 2477506..2478369 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3499.t1.stop1Gvermi3499.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 2477506..2477508 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3499.t1.CDS1Gvermi3499.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 2477506..2478207 -
Gvermi3499.t1.CDS2Gvermi3499.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 2478304..2478369 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3499.t1.exon1Gvermi3499.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 2477506..2478207 -
Gvermi3499.t1.exon2Gvermi3499.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 2478304..2478369 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3499.t1.intron1Gvermi3499.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 2478208..2478303 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3499.t1.start1Gvermi3499.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 2478367..2478369 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3499.t1 ID=Gvermi3499.t1|Name=Gvermi3499.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=256bp
MHKFLTSLSEETCGSTALCREVDDTRIHWPCFSLSQHFAAQLGNFKSRSI
GCVLDDCVDAFHQISIHDDLSNDDSQIVKSRVHRRLFHEGPDGLPPIVND
ICCLAAILNPAVDVNASFFTRDEVFSRAVRGLRDKYKRTETVVESQLYLF
HTQKRSGVRAEWKKNNIESLTTSDVAIDSENVNHQIWWAKFEEQVPELYS
IALQVLCIPVTCHPVIRFITNKNASCDDLLSQSRDPLREKRRFVSWNIKL
GHSSV*
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spliced messenger RNA

>Gvermi3499.t1 ID=Gvermi3499.t1|Name=Gvermi3499.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=768bp|location=Sequence derived from alignment at ScGOVlb_41:2477506..2478369- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACAAATTTCTTACTTCGCTTTCTGAAGAAACCTGTGGAAGCACCGC
TTTGTGTCGAGAAGTCGACGATACCCGAATACACTGGCCTTGCTTTTCTC
TCTCTCAGCACTTTGCGGCCCAACTGGGCAATTTTAAATCACGCTCTATC
GGGTGTGTTCTTGATGATTGTGTGGATGCATTTCATCAGATATCTATTCA
CGATGATCTGAGCAATGATGATTCTCAAATTGTAAAATCTCGTGTTCACA
GAAGGCTGTTCCATGAGGGACCTGACGGTCTGCCGCCTATTGTGAATGAC
ATATGTTGTCTCGCAGCGATACTTAATCCGGCTGTCGATGTGAACGCAAG
TTTTTTTACACGTGACGAAGTCTTCTCTAGGGCTGTTAGGGGTCTAAGGG
ACAAATACAAACGTACTGAGACGGTTGTAGAAAGCCAACTGTATCTTTTC
CACACACAAAAGAGGAGTGGAGTGAGAGCAGAGTGGAAGAAGAACAATAT
TGAAAGTTTAACAACATCCGACGTTGCTATCGACTCAGAAAACGTCAATC
ATCAAATATGGTGGGCAAAGTTTGAAGAACAAGTACCGGAATTATACAGC
ATCGCTCTTCAAGTTCTCTGTATTCCTGTGACCTGCCATCCCGTAATTCG
TTTCATCACGAACAAGAACGCCTCATGCGACGATCTGCTAAGTCAATCGA
GAGACCCGCTCAGAGAAAAACGGCGATTCGTATCCTGGAATATAAAACTT
GGACACTCATCCGTCTAA
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protein sequence of Gvermi3499.t1

>Gvermi3499.t1 ID=Gvermi3499.t1|Name=Gvermi3499.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=256bp
MHKFLTSLSEETCGSTALCREVDDTRIHWPCFSLSQHFAAQLGNFKSRSI
GCVLDDCVDAFHQISIHDDLSNDDSQIVKSRVHRRLFHEGPDGLPPIVND
ICCLAAILNPAVDVNASFFTRDEVFSRAVRGLRDKYKRTETVVESQLYLF
HTQKRSGVRAEWKKNNIESLTTSDVAIDSENVNHQIWWAKFEEQVPELYS
IALQVLCIPVTCHPVIRFITNKNASCDDLLSQSRDPLREKRRFVSWNIKL
GHSSV*
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mRNA from alignment at ScGOVlb_41:2477506..2478369-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3499.t1 ID=Gvermi3499.t1|Name=Gvermi3499.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=864bp|location=Sequence derived from alignment at ScGOVlb_41:2477506..2478369- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCACAAATTTCTTACTTCGCTTTCTGAAGAAACCTGTGGAAGCACCGC
TTTGTGTCGAGAAGTCGTGCGTTTTCTACTGTCCCCATCTTATCTTAAAG
ATCTTCGAGGCTTCCTCACTCTCCTCAGACCACTCACAAATCTTATTCTT
CTATATGGAAAGGACGATACCCGAATACACTGGCCTTGCTTTTCTCTCTC
TCAGCACTTTGCGGCCCAACTGGGCAATTTTAAATCACGCTCTATCGGGT
GTGTTCTTGATGATTGTGTGGATGCATTTCATCAGATATCTATTCACGAT
GATCTGAGCAATGATGATTCTCAAATTGTAAAATCTCGTGTTCACAGAAG
GCTGTTCCATGAGGGACCTGACGGTCTGCCGCCTATTGTGAATGACATAT
GTTGTCTCGCAGCGATACTTAATCCGGCTGTCGATGTGAACGCAAGTTTT
TTTACACGTGACGAAGTCTTCTCTAGGGCTGTTAGGGGTCTAAGGGACAA
ATACAAACGTACTGAGACGGTTGTAGAAAGCCAACTGTATCTTTTCCACA
CACAAAAGAGGAGTGGAGTGAGAGCAGAGTGGAAGAAGAACAATATTGAA
AGTTTAACAACATCCGACGTTGCTATCGACTCAGAAAACGTCAATCATCA
AATATGGTGGGCAAAGTTTGAAGAACAAGTACCGGAATTATACAGCATCG
CTCTTCAAGTTCTCTGTATTCCTGTGACCTGCCATCCCGTAATTCGTTTC
ATCACGAACAAGAACGCCTCATGCGACGATCTGCTAAGTCAATCGAGAGA
CCCGCTCAGAGAAAAACGGCGATTCGTATCCTGGAATATAAAACTTGGAC
ACTCATCCGTCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_41:2477506..2478369-

>Gvermi3499.t1 ID=Gvermi3499.t1|Name=Gvermi3499.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=768bp|location=Sequence derived from alignment at ScGOVlb_41:2477506..2478369- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCACAAATTTCTTACTTCGCTTTCTGAAGAAACCTGTGGAAGCACCGC
TTTGTGTCGAGAAGTCGACGATACCCGAATACACTGGCCTTGCTTTTCTC
TCTCTCAGCACTTTGCGGCCCAACTGGGCAATTTTAAATCACGCTCTATC
GGGTGTGTTCTTGATGATTGTGTGGATGCATTTCATCAGATATCTATTCA
CGATGATCTGAGCAATGATGATTCTCAAATTGTAAAATCTCGTGTTCACA
GAAGGCTGTTCCATGAGGGACCTGACGGTCTGCCGCCTATTGTGAATGAC
ATATGTTGTCTCGCAGCGATACTTAATCCGGCTGTCGATGTGAACGCAAG
TTTTTTTACACGTGACGAAGTCTTCTCTAGGGCTGTTAGGGGTCTAAGGG
ACAAATACAAACGTACTGAGACGGTTGTAGAAAGCCAACTGTATCTTTTC
CACACACAAAAGAGGAGTGGAGTGAGAGCAGAGTGGAAGAAGAACAATAT
TGAAAGTTTAACAACATCCGACGTTGCTATCGACTCAGAAAACGTCAATC
ATCAAATATGGTGGGCAAAGTTTGAAGAACAAGTACCGGAATTATACAGC
ATCGCTCTTCAAGTTCTCTGTATTCCTGTGACCTGCCATCCCGTAATTCG
TTTCATCACGAACAAGAACGCCTCATGCGACGATCTGCTAAGTCAATCGA
GAGACCCGCTCAGAGAAAAACGGCGATTCGTATCCTGGAATATAAAACTT
GGACACTCATCCGTCTAA
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