Gvermi3490.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3490.t1
Unique NameGvermi3490.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length68
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:2307014..2307439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3490Gvermi3490Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 2307014..2307439 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3490.t1Gvermi3490.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 2307014..2307439 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3490.t1.start1Gvermi3490.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 2307014..2307016 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3490.t1.CDS1Gvermi3490.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 2307014..2307083 +
Gvermi3490.t1.CDS2Gvermi3490.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 2307187..2307197 +
Gvermi3490.t1.CDS3Gvermi3490.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 2307317..2307439 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3490.t1.exon1Gvermi3490.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 2307014..2307083 +
Gvermi3490.t1.exon2Gvermi3490.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 2307187..2307197 +
Gvermi3490.t1.exon3Gvermi3490.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 2307317..2307439 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3490.t1.intron1Gvermi3490.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 2307084..2307186 +
Gvermi3490.t1.intron2Gvermi3490.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 2307198..2307316 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3490.t1.stop1Gvermi3490.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 2307437..2307439 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3490.t1 ID=Gvermi3490.t1|Name=Gvermi3490.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=68bp
LINVLAQAHDHIDGATSRELSFIGPTVILILVEKSMLFEPQMASVTMNFN
TSGFVEKNTTLPVYRLC*
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spliced messenger RNA

>Gvermi3490.t1 ID=Gvermi3490.t1|Name=Gvermi3490.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=204bp|location=Sequence derived from alignment at ScGOVlb_41:2307014..2307439+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGATCAATGTTCTTGCGCAAGCACATGACCATATTGATGGTGCCACTTC
ACGTGAACTGAGTTTTATAGGGCCAACGGTCATCCTCATCTTGGTGGAAA
AGAGCATGTTGTTTGAGCCACAAATGGCCAGCGTGACCATGAATTTCAAT
ACCTCGGGCTTCGTGGAGAAGAATACTACCCTCCCCGTGTATCGCTTGTG
CTAA
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protein sequence of Gvermi3490.t1

>Gvermi3490.t1 ID=Gvermi3490.t1|Name=Gvermi3490.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=68bp
LINVLAQAHDHIDGATSRELSFIGPTVILILVEKSMLFEPQMASVTMNFN
TSGFVEKNTTLPVYRLC*
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mRNA from alignment at ScGOVlb_41:2307014..2307439+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3490.t1 ID=Gvermi3490.t1|Name=Gvermi3490.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=426bp|location=Sequence derived from alignment at ScGOVlb_41:2307014..2307439+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGATCAATGTTCTTGCGCAAGCACATGACCATATTGATGGTGCCACTTC
ACGTGAACTGAGTTTTATAGGTAAGCACCACATACATTGCGTTACCGGTA
GTGACTTTTCACGAAAGGAATGGCTTGAATTAGTGACCTCGCTATTGTTT
TGATTTCCAATAAATAACTACAGGGCCAACGGTCGTTCATAAACAAAATG
CGTTCATCAAAATAATGGATCACGTTCACAAATGAAGAGGTCCCCCTCCC
TTTTTGATGTCACCAACAAAAATTTAACTCTTTTTCTTGTGTCGAATTCT
TAGATCCTCATCTTGGTGGAAAAGAGCATGTTGTTTGAGCCACAAATGGC
CAGCGTGACCATGAATTTCAATACCTCGGGCTTCGTGGAGAAGAATACTA
CCCTCCCCGTGTATCGCTTGTGCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_41:2307014..2307439+

>Gvermi3490.t1 ID=Gvermi3490.t1|Name=Gvermi3490.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=204bp|location=Sequence derived from alignment at ScGOVlb_41:2307014..2307439+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGATCAATGTTCTTGCGCAAGCACATGACCATATTGATGGTGCCACTTC
ACGTGAACTGAGTTTTATAGGGCCAACGGTCATCCTCATCTTGGTGGAAA
AGAGCATGTTGTTTGAGCCACAAATGGCCAGCGTGACCATGAATTTCAAT
ACCTCGGGCTTCGTGGAGAAGAATACTACCCTCCCCGTGTATCGCTTGTG
CTAA
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