Gvermi3480.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3480.t1
Unique NameGvermi3480.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length351
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:2036355..2037407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3480Gvermi3480Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 2036355..2037407 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3480.t1.start1Gvermi3480.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 2036355..2036357 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3480.t1.CDS1Gvermi3480.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 2036355..2037407 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3480.t1.exon1Gvermi3480.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 2036355..2037407 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3480.t1.stop1Gvermi3480.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 2037405..2037407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3480.t1Gvermi3480.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 2036355..2037407 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3480.t1 ID=Gvermi3480.t1|Name=Gvermi3480.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=351bp
MLLLLPSMPPPTFLSPVPPNPCIPYATPPPLPRHVPPSVFFLHVPKTAGT
LVYKLLLRYANKTRGLACTYPFDGNRHPFYYFTLVSPPPPHAFPADSLER
RLLHAVGSRSYRDRAPLLARGACRILRGHVTTSVLAAYEQPPLTITVLRE
PLARFVSMYEFARSMARSRPGATGWDDWLRADSLAKELANSSSLFHRPFY
DDAGAWIARRNQGFSFHFYGVLHQLSGITPRFDGVADPFHFSVSNAALMA
DNAKRNLCAVHLVGLQHDVVALIDRFLHLTQPVARWTRPERLAFRSAVLN
KTPGRISRNVDDHLPPRIKAELQRRLRHEIDVYEFARRLVAYRAAVAARR
*
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spliced messenger RNA

>Gvermi3480.t1 ID=Gvermi3480.t1|Name=Gvermi3480.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1053bp|location=Sequence derived from alignment at ScGOVlb_41:2036355..2037407+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
atgctgctgctgctCCCGTCCATGCCGCCGCCCACCTTCCTGTCCCCCGT
GCCGCCCAACCCGTGCATCCCGTACGCCACCCCCCCGCCGCTCCCCCGCC
ACGTCCCGCCCTCCGTCTTCTTCCTGCACGTCCCCAAGACCGCCGGCACC
CTCGTGTACAAGCTCCTGCTGCGGTACGCCAACAAGACGCGCGGCCTCGC
CTGCACCTACCCCTTCGACGGCAACCGCCACCCCTTCTACTACTTCACCC
TCGTGTCCCCGCCCCCGCCGCACGCCTTCCCCGCCGACTCGCTCGAGCGC
CGCCTGCTGCACGCCGTCGGCAGCCGCTCGTACCGCGACCGCGCCCCGCT
GCTGGCGCGCGGCGCCTGCCGCATCCTGCGCGGCCACGTCACCACCTCCG
TCCTGGCCGCCTACGAGCAGCCCCCACTCACCATCACCGTCCTGCGCGAG
CCGCTCGCCCGCTTCGTCTCCATGTACGAGTTTGCGCGCTCGATGGCCCG
CTCCCGCCCGGGCGCCACCGGCTGGGACGACTGGCTGCGCGCCGACTCGC
TGGCCAAGGAGCTCGCCAACTCCTCTTCGCTCTTCCACCGCCCCTTCTAC
GACGACGCCGGCGCCTGGATCGCCCGCCGCAACCAGGGCTTCTCGTTCCA
CTTCTACGGCGTGCTGCACCAGCTGTCGGGCATCACCCCGCGCTTCGACG
GCGTCGCCGACCCCTTCCACTTCTCCGTGTCCAACGCCGCCCTCATGGCC
GACAACGCCAAGCGCAACCTGTGCGCCGTGCACCTCGTCGGCCTGCAGCA
CGACGTCGTCGCGCTCATCGACCGCTTTCTCCACCTCACGCAGCCGGTTG
CGCGCTGGACCCGCCCCGAGCGCCTCGCCTTCCGCAGCGCCGTCCTCAAC
AAGACACCGGGCCGCATCAGCCGCAACGTCGACGACCACCTGCCCCCGCG
CATTAAGGCCGAGCTGCAGCGCCGCCTGCGCCACGAGATCGACGTTTACG
AATTTGCGcgccgcctcgtcgcctaccgcgccgccgtcgccgcccgccgg
tag
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protein sequence of Gvermi3480.t1

>Gvermi3480.t1 ID=Gvermi3480.t1|Name=Gvermi3480.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=351bp
MLLLLPSMPPPTFLSPVPPNPCIPYATPPPLPRHVPPSVFFLHVPKTAGT
LVYKLLLRYANKTRGLACTYPFDGNRHPFYYFTLVSPPPPHAFPADSLER
RLLHAVGSRSYRDRAPLLARGACRILRGHVTTSVLAAYEQPPLTITVLRE
PLARFVSMYEFARSMARSRPGATGWDDWLRADSLAKELANSSSLFHRPFY
DDAGAWIARRNQGFSFHFYGVLHQLSGITPRFDGVADPFHFSVSNAALMA
DNAKRNLCAVHLVGLQHDVVALIDRFLHLTQPVARWTRPERLAFRSAVLN
KTPGRISRNVDDHLPPRIKAELQRRLRHEIDVYEFARRLVAYRAAVAARR
*
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mRNA from alignment at ScGOVlb_41:2036355..2037407+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3480.t1 ID=Gvermi3480.t1|Name=Gvermi3480.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1053bp|location=Sequence derived from alignment at ScGOVlb_41:2036355..2037407+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgctgctgctgctCCCGTCCATGCCGCCGCCCACCTTCCTGTCCCCCGT
GCCGCCCAACCCGTGCATCCCGTACGCCACCCCCCCGCCGCTCCCCCGCC
ACGTCCCGCCCTCCGTCTTCTTCCTGCACGTCCCCAAGACCGCCGGCACC
CTCGTGTACAAGCTCCTGCTGCGGTACGCCAACAAGACGCGCGGCCTCGC
CTGCACCTACCCCTTCGACGGCAACCGCCACCCCTTCTACTACTTCACCC
TCGTGTCCCCGCCCCCGCCGCACGCCTTCCCCGCCGACTCGCTCGAGCGC
CGCCTGCTGCACGCCGTCGGCAGCCGCTCGTACCGCGACCGCGCCCCGCT
GCTGGCGCGCGGCGCCTGCCGCATCCTGCGCGGCCACGTCACCACCTCCG
TCCTGGCCGCCTACGAGCAGCCCCCACTCACCATCACCGTCCTGCGCGAG
CCGCTCGCCCGCTTCGTCTCCATGTACGAGTTTGCGCGCTCGATGGCCCG
CTCCCGCCCGGGCGCCACCGGCTGGGACGACTGGCTGCGCGCCGACTCGC
TGGCCAAGGAGCTCGCCAACTCCTCTTCGCTCTTCCACCGCCCCTTCTAC
GACGACGCCGGCGCCTGGATCGCCCGCCGCAACCAGGGCTTCTCGTTCCA
CTTCTACGGCGTGCTGCACCAGCTGTCGGGCATCACCCCGCGCTTCGACG
GCGTCGCCGACCCCTTCCACTTCTCCGTGTCCAACGCCGCCCTCATGGCC
GACAACGCCAAGCGCAACCTGTGCGCCGTGCACCTCGTCGGCCTGCAGCA
CGACGTCGTCGCGCTCATCGACCGCTTTCTCCACCTCACGCAGCCGGTTG
CGCGCTGGACCCGCCCCGAGCGCCTCGCCTTCCGCAGCGCCGTCCTCAAC
AAGACACCGGGCCGCATCAGCCGCAACGTCGACGACCACCTGCCCCCGCG
CATTAAGGCCGAGCTGCAGCGCCGCCTGCGCCACGAGATCGACGTTTACG
AATTTGCGcgccgcctcgtcgcctaccgcgccgccgtcgccgcccgccgg
tag
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Coding sequence (CDS) from alignment at ScGOVlb_41:2036355..2037407+

>Gvermi3480.t1 ID=Gvermi3480.t1|Name=Gvermi3480.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1053bp|location=Sequence derived from alignment at ScGOVlb_41:2036355..2037407+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgctgctgctgctCCCGTCCATGCCGCCGCCCACCTTCCTGTCCCCCGT
GCCGCCCAACCCGTGCATCCCGTACGCCACCCCCCCGCCGCTCCCCCGCC
ACGTCCCGCCCTCCGTCTTCTTCCTGCACGTCCCCAAGACCGCCGGCACC
CTCGTGTACAAGCTCCTGCTGCGGTACGCCAACAAGACGCGCGGCCTCGC
CTGCACCTACCCCTTCGACGGCAACCGCCACCCCTTCTACTACTTCACCC
TCGTGTCCCCGCCCCCGCCGCACGCCTTCCCCGCCGACTCGCTCGAGCGC
CGCCTGCTGCACGCCGTCGGCAGCCGCTCGTACCGCGACCGCGCCCCGCT
GCTGGCGCGCGGCGCCTGCCGCATCCTGCGCGGCCACGTCACCACCTCCG
TCCTGGCCGCCTACGAGCAGCCCCCACTCACCATCACCGTCCTGCGCGAG
CCGCTCGCCCGCTTCGTCTCCATGTACGAGTTTGCGCGCTCGATGGCCCG
CTCCCGCCCGGGCGCCACCGGCTGGGACGACTGGCTGCGCGCCGACTCGC
TGGCCAAGGAGCTCGCCAACTCCTCTTCGCTCTTCCACCGCCCCTTCTAC
GACGACGCCGGCGCCTGGATCGCCCGCCGCAACCAGGGCTTCTCGTTCCA
CTTCTACGGCGTGCTGCACCAGCTGTCGGGCATCACCCCGCGCTTCGACG
GCGTCGCCGACCCCTTCCACTTCTCCGTGTCCAACGCCGCCCTCATGGCC
GACAACGCCAAGCGCAACCTGTGCGCCGTGCACCTCGTCGGCCTGCAGCA
CGACGTCGTCGCGCTCATCGACCGCTTTCTCCACCTCACGCAGCCGGTTG
CGCGCTGGACCCGCCCCGAGCGCCTCGCCTTCCGCAGCGCCGTCCTCAAC
AAGACACCGGGCCGCATCAGCCGCAACGTCGACGACCACCTGCCCCCGCG
CATTAAGGCCGAGCTGCAGCGCCGCCTGCGCCACGAGATCGACGTTTACG
AATTTGCGcgccgcctcgtcgcctaccgcgccgccgtcgccgcccgccgg
tag
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