Gvermi3478.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3478.t1
Unique NameGvermi3478.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length316
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:2022154..2023101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1128421.JAGA01000003_gene3009
PFAMsBig_3_5,SGL,VCBS
Max annot lvl2|Bacteria
Evalue1.15e-31
EggNOG OGsCOG3391@1|root,COG3391@2|Bacteria
Descriptionamine dehydrogenase activity
COG categoryCO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3478Gvermi3478Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 2022154..2023101 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3478.t1.start1Gvermi3478.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 2022154..2022156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3478.t1.CDS1Gvermi3478.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 2022154..2023101 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3478.t1.exon1Gvermi3478.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 2022154..2023101 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3478.t1.stop1Gvermi3478.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 2023099..2023101 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3478.t1Gvermi3478.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 2022154..2023101 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3478.t1 ID=Gvermi3478.t1|Name=Gvermi3478.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=316bp
MNVWLVVSALCAAALAQRVALPPKLQAEGVAHAAGSLFFAAEFRTGAVFL
IDVATGFASTVVRPQRGRFALGLAARNGTLFVSGGGSLGAFGAPPRMFVY
DILSGGTVAACVAPEGAVVNDVTVDERFAYYTDSALGQVYQLRLAALPAC
QLHTLPLPRDAFPRAPGLFTANGIVRFASGLVVANTNAANLFFVDLRTNA
VQQILAPNSVRGVDGLEIYAHARAQRATLFVVQNRENVVSVWRLRRVGKR
VNARFVRNITSPTFDTPTTAALGGGRLVVTNARFRTFSFGEELPDDAQFS
LSAFRLRRRAAFRKC*
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spliced messenger RNA

>Gvermi3478.t1 ID=Gvermi3478.t1|Name=Gvermi3478.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=948bp|location=Sequence derived from alignment at ScGOVlb_41:2022154..2023101+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGTTTGGCTTGTTGTGTCGGCCCTCTGCGCTGCGGCGCTGGCGCA
GAGAGTCGCCCTGCCGCCAAAGCTTCAGGCGGAGGGCGTCGCGCATGCAG
CCGGCTCTCTCTTCTTCGCCGCGGAGTTTCGCACCGGTGCCGTCTTCCTC
ATTGACGTTGCCACAGGGTTCGCGTCCACAGTCGTTCGCCCGCAGCGCGG
GCGCTTTGCGCTCGGGCTCGCCGCCCGAAACGGCACGTTGTTTGTTTCCG
GCGGGGGGTCGCTGGGCGCCTTCGGCGCCCCGCCGCGAATGTTTGTGTAC
GACATTCTGTCCGGAGGCACCGTCGCCGCCTGCGTCGCGCCGGAGGGCGC
TGTGGTCAACGACGTGACCGTCGACGAGCGCTTTGCGTACTACACCGACT
CCGCGCTGGGGCAGGTGTACCAGTTGCGCCTGGCCGCGCTTCCCGCCTGC
CAATTGCACACTCTGCCGCTGCCGCGCGACGCTTTCCCGCGCGCGCCCGG
CCTCTTCACGGCCAACGGCATCGTGCGCTTCGCGTCCGGGCTGGTTGTCG
CCAACACCAACGCCGCCAACCTCTTCTTCGTCGACCTGCGCACCAACGCC
GTGCAGCAGATATTGGCGCCAAACTCGGTGCGCGGCGTGGATGGGTTGGA
GATCTACGCCCACGCACGCGCACAGCGCGCCACGCTTTTCGTCGTGCAGA
ACCGCGAGAACGTCGTGTCCGTGTGGCGGCTGCGGCGCGTCGGCAAACGC
GTGAATGCGCGATTCGTGCGCAACATCACGTCGCCGACGTTTGACACCCC
CACAACGGCCGCGTTGGGCGGTGGACGACTGGTCGTCACCAACGCTCGAT
TCCGCACGTTTTCATTTGGGGAGGAGCTCCCGGATGATGCGCAGTTTTCA
CTATCTGCGTTCCGTCTGCGGCGAAGGGCAGCTTTTCGCAAATGCTAG
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protein sequence of Gvermi3478.t1

>Gvermi3478.t1 ID=Gvermi3478.t1|Name=Gvermi3478.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=316bp
MNVWLVVSALCAAALAQRVALPPKLQAEGVAHAAGSLFFAAEFRTGAVFL
IDVATGFASTVVRPQRGRFALGLAARNGTLFVSGGGSLGAFGAPPRMFVY
DILSGGTVAACVAPEGAVVNDVTVDERFAYYTDSALGQVYQLRLAALPAC
QLHTLPLPRDAFPRAPGLFTANGIVRFASGLVVANTNAANLFFVDLRTNA
VQQILAPNSVRGVDGLEIYAHARAQRATLFVVQNRENVVSVWRLRRVGKR
VNARFVRNITSPTFDTPTTAALGGGRLVVTNARFRTFSFGEELPDDAQFS
LSAFRLRRRAAFRKC*
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mRNA from alignment at ScGOVlb_41:2022154..2023101+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3478.t1 ID=Gvermi3478.t1|Name=Gvermi3478.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=948bp|location=Sequence derived from alignment at ScGOVlb_41:2022154..2023101+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACGTTTGGCTTGTTGTGTCGGCCCTCTGCGCTGCGGCGCTGGCGCA
GAGAGTCGCCCTGCCGCCAAAGCTTCAGGCGGAGGGCGTCGCGCATGCAG
CCGGCTCTCTCTTCTTCGCCGCGGAGTTTCGCACCGGTGCCGTCTTCCTC
ATTGACGTTGCCACAGGGTTCGCGTCCACAGTCGTTCGCCCGCAGCGCGG
GCGCTTTGCGCTCGGGCTCGCCGCCCGAAACGGCACGTTGTTTGTTTCCG
GCGGGGGGTCGCTGGGCGCCTTCGGCGCCCCGCCGCGAATGTTTGTGTAC
GACATTCTGTCCGGAGGCACCGTCGCCGCCTGCGTCGCGCCGGAGGGCGC
TGTGGTCAACGACGTGACCGTCGACGAGCGCTTTGCGTACTACACCGACT
CCGCGCTGGGGCAGGTGTACCAGTTGCGCCTGGCCGCGCTTCCCGCCTGC
CAATTGCACACTCTGCCGCTGCCGCGCGACGCTTTCCCGCGCGCGCCCGG
CCTCTTCACGGCCAACGGCATCGTGCGCTTCGCGTCCGGGCTGGTTGTCG
CCAACACCAACGCCGCCAACCTCTTCTTCGTCGACCTGCGCACCAACGCC
GTGCAGCAGATATTGGCGCCAAACTCGGTGCGCGGCGTGGATGGGTTGGA
GATCTACGCCCACGCACGCGCACAGCGCGCCACGCTTTTCGTCGTGCAGA
ACCGCGAGAACGTCGTGTCCGTGTGGCGGCTGCGGCGCGTCGGCAAACGC
GTGAATGCGCGATTCGTGCGCAACATCACGTCGCCGACGTTTGACACCCC
CACAACGGCCGCGTTGGGCGGTGGACGACTGGTCGTCACCAACGCTCGAT
TCCGCACGTTTTCATTTGGGGAGGAGCTCCCGGATGATGCGCAGTTTTCA
CTATCTGCGTTCCGTCTGCGGCGAAGGGCAGCTTTTCGCAAATGCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_41:2022154..2023101+

>Gvermi3478.t1 ID=Gvermi3478.t1|Name=Gvermi3478.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=948bp|location=Sequence derived from alignment at ScGOVlb_41:2022154..2023101+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACGTTTGGCTTGTTGTGTCGGCCCTCTGCGCTGCGGCGCTGGCGCA
GAGAGTCGCCCTGCCGCCAAAGCTTCAGGCGGAGGGCGTCGCGCATGCAG
CCGGCTCTCTCTTCTTCGCCGCGGAGTTTCGCACCGGTGCCGTCTTCCTC
ATTGACGTTGCCACAGGGTTCGCGTCCACAGTCGTTCGCCCGCAGCGCGG
GCGCTTTGCGCTCGGGCTCGCCGCCCGAAACGGCACGTTGTTTGTTTCCG
GCGGGGGGTCGCTGGGCGCCTTCGGCGCCCCGCCGCGAATGTTTGTGTAC
GACATTCTGTCCGGAGGCACCGTCGCCGCCTGCGTCGCGCCGGAGGGCGC
TGTGGTCAACGACGTGACCGTCGACGAGCGCTTTGCGTACTACACCGACT
CCGCGCTGGGGCAGGTGTACCAGTTGCGCCTGGCCGCGCTTCCCGCCTGC
CAATTGCACACTCTGCCGCTGCCGCGCGACGCTTTCCCGCGCGCGCCCGG
CCTCTTCACGGCCAACGGCATCGTGCGCTTCGCGTCCGGGCTGGTTGTCG
CCAACACCAACGCCGCCAACCTCTTCTTCGTCGACCTGCGCACCAACGCC
GTGCAGCAGATATTGGCGCCAAACTCGGTGCGCGGCGTGGATGGGTTGGA
GATCTACGCCCACGCACGCGCACAGCGCGCCACGCTTTTCGTCGTGCAGA
ACCGCGAGAACGTCGTGTCCGTGTGGCGGCTGCGGCGCGTCGGCAAACGC
GTGAATGCGCGATTCGTGCGCAACATCACGTCGCCGACGTTTGACACCCC
CACAACGGCCGCGTTGGGCGGTGGACGACTGGTCGTCACCAACGCTCGAT
TCCGCACGTTTTCATTTGGGGAGGAGCTCCCGGATGATGCGCAGTTTTCA
CTATCTGCGTTCCGTCTGCGGCGAAGGGCAGCTTTTCGCAAATGCTAG
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