Gvermi3471.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3471.t1
Unique NameGvermi3471.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length396
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:1967968..1969155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3471Gvermi3471Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 1967968..1969155 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3471.t1.start1Gvermi3471.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 1967968..1967970 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3471.t1.CDS1Gvermi3471.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 1967968..1969155 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3471.t1.exon1Gvermi3471.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 1967968..1969155 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3471.t1.stop1Gvermi3471.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 1969153..1969155 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3471.t1Gvermi3471.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 1967968..1969155 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3471.t1 ID=Gvermi3471.t1|Name=Gvermi3471.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=396bp
MPYLCPRRPDYWPPHRLNVQLHPHPHPHNRPVEFFITMSLRLLLAAAVLL
ALACSSRASMCQTTTNRSTFLQSAFDANTRFIRKGVPAVAVDAFFRRAIV
LVIHGCSCPAADMLDALCIRLRFNGDYTVRALANIIATPVHPHSPGAAST
YFPLYNPHHHPDALSSEHALLLANHREELVNFLAPVEADRIPDLVWTSRI
FPSEDYLFKANHTVISHACTYYRANITDGDERFVSAKDSVAYALGAVQVV
RYANGNVEEAMDMLSEHTRYVYHAAICMQKSGADLPIPIAALLRLVDRSK
DLMSKALENLHNSPSTFLQYYQYHLPAPAQMENVPAIGEPPLRMFRQLVD
QFSSISSGGIAATFLDFDTSQGQSITVRLTNDLLASCNPYDYFAI*
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spliced messenger RNA

>Gvermi3471.t1 ID=Gvermi3471.t1|Name=Gvermi3471.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at ScGOVlb_41:1967968..1969155+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
aTGCCGTACTTATGCCCTCGACGCCCCGACTACTGGCCACCGCACCGCCT
CAACGTGCAGCTCCATCCCCATCCCCACCCTCACAACCGTCCTGTCGAAT
TCTTCATCACCATGTCCTTGCGTCTACTCCTCGCTGCAGCCGTGTTACTC
GCACTGGCGTGTTCATCACGCGCGTCCATGTGCCAAACCACCACCAATCG
CTCCACGTTTCTGCAAAGCGCCTTCGACGCCAACACGCGCTTCATTAGAA
AGGGTGTCCCCGCGGTCGCTGTTGACGCCTTCTTCAGACGCGCCATCGTG
CTCGTCATTCACGGCTGCTCCTGCCCTGCCGCTGACATGCTGGATGCTCT
CTGCATCCGCCTGCGCTTCAATGGTGACTACACCGTGCGCGCCCTGGCCA
ACATCATCGCCACCCCCGTGCACCCTCATTCGCCCGGCGCAGCGTCCACC
TACTTTCCGCTGTACAACCCGCATCACCACCCCGATGCCTTGTCTTCTGA
GCATGCCCTCTTGCTCGCGAATCACCGCGAAGAGCTCGTCAACTTCTTGG
CTCCCGTCGAAGCCGATCGCATCCCCGACCTCGTGTGGACCTCTCGCATC
TTTCCGTCGGAAGACTATCTGTTCAAGGCGAACCACACCGTCATCTCGCA
CGCGTGCACGTACTATCGTGCCAACATCACCGACGGTGACGAGCGCTTCG
TGTCGGCAAAGGACTCGGTCGCATACGCACTGGGCGCCGTGCAGGTCGTG
CGCTACGCAAACGGCAACGTCGAAGAGGCCATGGACATGCTCTCCGAGCA
CACGCGCTACGTCTACCATGCCGCCATCTGCATGCAGAAGAGCGGCGCCG
ATTTGCCGATTCCCATCGCTGCCCTACTCCGCCTTGTCGACCGCTCCAAG
GATCTCATGAGCAAAGCCCTCGAGAACTTGCACAACAGCCCCAGCACCTT
CCTGCAGTATTATCAGTACCACTTGCCGGCGCCGGCGCAAATGGAGAATG
TCCCCGCCATTGGCGAGCCGCCACTCAGGATGTTTCGACAGCTTGTTGAT
CAGTTTTCTTCTATTTCCTCGGGCGGTATCGCTGCCACCTTCCTGGACTT
CGACACCTCCCAGGGCCAGAGTATTACCGTTCGCTTGACCAACGACCTCT
TGGCCAGTTGCAATCCGTATGACTACTTCGCTATTTAA
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protein sequence of Gvermi3471.t1

>Gvermi3471.t1 ID=Gvermi3471.t1|Name=Gvermi3471.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=396bp
MPYLCPRRPDYWPPHRLNVQLHPHPHPHNRPVEFFITMSLRLLLAAAVLL
ALACSSRASMCQTTTNRSTFLQSAFDANTRFIRKGVPAVAVDAFFRRAIV
LVIHGCSCPAADMLDALCIRLRFNGDYTVRALANIIATPVHPHSPGAAST
YFPLYNPHHHPDALSSEHALLLANHREELVNFLAPVEADRIPDLVWTSRI
FPSEDYLFKANHTVISHACTYYRANITDGDERFVSAKDSVAYALGAVQVV
RYANGNVEEAMDMLSEHTRYVYHAAICMQKSGADLPIPIAALLRLVDRSK
DLMSKALENLHNSPSTFLQYYQYHLPAPAQMENVPAIGEPPLRMFRQLVD
QFSSISSGGIAATFLDFDTSQGQSITVRLTNDLLASCNPYDYFAI*
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mRNA from alignment at ScGOVlb_41:1967968..1969155+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3471.t1 ID=Gvermi3471.t1|Name=Gvermi3471.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at ScGOVlb_41:1967968..1969155+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
aTGCCGTACTTATGCCCTCGACGCCCCGACTACTGGCCACCGCACCGCCT
CAACGTGCAGCTCCATCCCCATCCCCACCCTCACAACCGTCCTGTCGAAT
TCTTCATCACCATGTCCTTGCGTCTACTCCTCGCTGCAGCCGTGTTACTC
GCACTGGCGTGTTCATCACGCGCGTCCATGTGCCAAACCACCACCAATCG
CTCCACGTTTCTGCAAAGCGCCTTCGACGCCAACACGCGCTTCATTAGAA
AGGGTGTCCCCGCGGTCGCTGTTGACGCCTTCTTCAGACGCGCCATCGTG
CTCGTCATTCACGGCTGCTCCTGCCCTGCCGCTGACATGCTGGATGCTCT
CTGCATCCGCCTGCGCTTCAATGGTGACTACACCGTGCGCGCCCTGGCCA
ACATCATCGCCACCCCCGTGCACCCTCATTCGCCCGGCGCAGCGTCCACC
TACTTTCCGCTGTACAACCCGCATCACCACCCCGATGCCTTGTCTTCTGA
GCATGCCCTCTTGCTCGCGAATCACCGCGAAGAGCTCGTCAACTTCTTGG
CTCCCGTCGAAGCCGATCGCATCCCCGACCTCGTGTGGACCTCTCGCATC
TTTCCGTCGGAAGACTATCTGTTCAAGGCGAACCACACCGTCATCTCGCA
CGCGTGCACGTACTATCGTGCCAACATCACCGACGGTGACGAGCGCTTCG
TGTCGGCAAAGGACTCGGTCGCATACGCACTGGGCGCCGTGCAGGTCGTG
CGCTACGCAAACGGCAACGTCGAAGAGGCCATGGACATGCTCTCCGAGCA
CACGCGCTACGTCTACCATGCCGCCATCTGCATGCAGAAGAGCGGCGCCG
ATTTGCCGATTCCCATCGCTGCCCTACTCCGCCTTGTCGACCGCTCCAAG
GATCTCATGAGCAAAGCCCTCGAGAACTTGCACAACAGCCCCAGCACCTT
CCTGCAGTATTATCAGTACCACTTGCCGGCGCCGGCGCAAATGGAGAATG
TCCCCGCCATTGGCGAGCCGCCACTCAGGATGTTTCGACAGCTTGTTGAT
CAGTTTTCTTCTATTTCCTCGGGCGGTATCGCTGCCACCTTCCTGGACTT
CGACACCTCCCAGGGCCAGAGTATTACCGTTCGCTTGACCAACGACCTCT
TGGCCAGTTGCAATCCGTATGACTACTTCGCTATTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_41:1967968..1969155+

>Gvermi3471.t1 ID=Gvermi3471.t1|Name=Gvermi3471.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1188bp|location=Sequence derived from alignment at ScGOVlb_41:1967968..1969155+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
aTGCCGTACTTATGCCCTCGACGCCCCGACTACTGGCCACCGCACCGCCT
CAACGTGCAGCTCCATCCCCATCCCCACCCTCACAACCGTCCTGTCGAAT
TCTTCATCACCATGTCCTTGCGTCTACTCCTCGCTGCAGCCGTGTTACTC
GCACTGGCGTGTTCATCACGCGCGTCCATGTGCCAAACCACCACCAATCG
CTCCACGTTTCTGCAAAGCGCCTTCGACGCCAACACGCGCTTCATTAGAA
AGGGTGTCCCCGCGGTCGCTGTTGACGCCTTCTTCAGACGCGCCATCGTG
CTCGTCATTCACGGCTGCTCCTGCCCTGCCGCTGACATGCTGGATGCTCT
CTGCATCCGCCTGCGCTTCAATGGTGACTACACCGTGCGCGCCCTGGCCA
ACATCATCGCCACCCCCGTGCACCCTCATTCGCCCGGCGCAGCGTCCACC
TACTTTCCGCTGTACAACCCGCATCACCACCCCGATGCCTTGTCTTCTGA
GCATGCCCTCTTGCTCGCGAATCACCGCGAAGAGCTCGTCAACTTCTTGG
CTCCCGTCGAAGCCGATCGCATCCCCGACCTCGTGTGGACCTCTCGCATC
TTTCCGTCGGAAGACTATCTGTTCAAGGCGAACCACACCGTCATCTCGCA
CGCGTGCACGTACTATCGTGCCAACATCACCGACGGTGACGAGCGCTTCG
TGTCGGCAAAGGACTCGGTCGCATACGCACTGGGCGCCGTGCAGGTCGTG
CGCTACGCAAACGGCAACGTCGAAGAGGCCATGGACATGCTCTCCGAGCA
CACGCGCTACGTCTACCATGCCGCCATCTGCATGCAGAAGAGCGGCGCCG
ATTTGCCGATTCCCATCGCTGCCCTACTCCGCCTTGTCGACCGCTCCAAG
GATCTCATGAGCAAAGCCCTCGAGAACTTGCACAACAGCCCCAGCACCTT
CCTGCAGTATTATCAGTACCACTTGCCGGCGCCGGCGCAAATGGAGAATG
TCCCCGCCATTGGCGAGCCGCCACTCAGGATGTTTCGACAGCTTGTTGAT
CAGTTTTCTTCTATTTCCTCGGGCGGTATCGCTGCCACCTTCCTGGACTT
CGACACCTCCCAGGGCCAGAGTATTACCGTTCGCTTGACCAACGACCTCT
TGGCCAGTTGCAATCCGTATGACTACTTCGCTATTTAA
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