Gvermi3459.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3459.t1
Unique NameGvermi3459.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length572
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:1748083..1749798 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ29090
PFAMsAmino_oxidase
Max annot lvl35493|Streptophyta
KEGG rclassRC00053,RC00225
KEGG koko:K13366
KEGG ReactionR01914,R09076
KEGG Pathwayko00330,ko00410,ko01100,map00330,map00410,map01100
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006576,GO:0006595,GO:0006598,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009308,GO:0009310,GO:0009987,GO:0016491,GO:0016645,GO:0016647,GO:0034641,GO:0036094,GO:0042402,GO:0043167,GO:0043168,GO:0044106,GO:0044237,GO:0046592,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575
Evalue2.55e-41
EggNOG OGsCOG1231@1|root,KOG0029@2759|Eukaryota,37QM5@33090|Viridiplantae,3GBX6@35493|Streptophyta
EC1.5.3.14,1.5.3.16
DescriptionPolyamine oxidase
COG categoryQ
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3459Gvermi3459Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 1748083..1749798 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3459.t1.stop1Gvermi3459.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 1748083..1748085 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3459.t1.CDS1Gvermi3459.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 1748083..1749798 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3459.t1.exon1Gvermi3459.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 1748083..1749798 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3459.t1.start1Gvermi3459.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 1749796..1749798 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3459.t1Gvermi3459.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 1748083..1749798 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3459.t1 ID=Gvermi3459.t1|Name=Gvermi3459.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=572bp
MSILIQQKQTGLQHTAFFNYCRFSSRQKPHITTSGFRITSEIFALSIPFM
MQCFFRTNHHSRCSIIIMIIFLMHCQSSCSHSVSYHSSLAKKLNESCQIE
PVIIVGAGIAGAKVALELSKQNIPFIIIEATDRVGGRMRSVTVPSASCSE
CSALRTGFQYELGANWMQGYRKGVPFFDFVDKYVKLKGTATDFDDTYFVQ
NGSYVSNAVANPVWERFEDAMSKVYESTRTMKKSSSSEQYLNLASALLYV
AGYEALHPIEHAAMRSIIDFEYAVPANDVSAQHLSPIYDPKAPESVDFFV
SDPRGFKVVVDVTLTMAGVQSTNSSNSKLLLNSPVRNIVYGKKRALVITR
AGEKIYGSAVVSTLPLGVLQASLFSNPMYPNAVRFTPHLSNERKLAISKH
IMADYLKILVQFRRPLFSAKDPLFLIPVNCSEGGFVSLQNLNKKNYFPGS
NAIIITSTDAYSRDLVCMNRQKVLVDVLEYVSMALGRVVHKDDVILLEIP
HFLRDQYFRGSYGGISPSVTIRDREEFNKPSQSLFFAGEAHNNNGLNGYV
HGAWDSGMSTANAVLEFVKCE*
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spliced messenger RNA

>Gvermi3459.t1 ID=Gvermi3459.t1|Name=Gvermi3459.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1716bp|location=Sequence derived from alignment at ScGOVlb_41:1748083..1749798- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCATTCTCATACAGCAGAAACAAACAGGTCTTCAGCATACCGCCTT
CTTCAATTACTGCCGTTTTTCCTCTCGGCAGAAACCGCATATCACTACAT
CGGGTTTTCGTATAACATCCGAAATCTTTGCCCTGAGCATCCCGTTCATG
ATGCAGTGTTTTTTCCGCACAAACCACCATTCACGATGTTCTATTATTAT
TATGATCATTTTCTTAATGCACTGCCAAAGCTCATGCTCTCATTCAGTAT
CCTATCATTCTTCTCTTGCGAAGAAGCTGAATGAATCATGTCAGATAGAA
CCCGTGATTATTGTGGGTGCTGGGATTGCTGGTGCGAAGGTTGCCCTCGA
ACTGTCAAAGCAAAACATTCCTTTTATTATAATCGAAGCTACTGACAGAG
TGGGCGGCCGCATGAGATCTGTTACCGTCCCATCGGCATCATGCTCTGAG
TGTTCGGCTCTTCGCACAGGATTTCAGTATGAATTGGGAGCGAATTGGAT
GCAAGGGTACCGCAAGGGTGTTCCATTTTTTGACTTTGTTGACAAGTACG
TTAAACTGAAAGGCACTGCTACTGACTTTGATGACACCTATTTTGTTCAA
AATGGAAGCTATGTGAGCAATGCAGTTGCAAATCCAGTTTGGGAACGCTT
TGAAGACGCAATGTCAAAAGTGTATGAGTCAACGAGGACAATGAAGAAAA
GTTCCTCCAGCGAGCAATATCTGAACCTCGCTTCTGCACTATTGTATGTG
GCCGGATATGAAGCTCTTCACCCTATAGAGCATGCTGCTATGCGATCTAT
AATCGACTTTGAGTATGCAGTACCCGCAAACGATGTATCTGCTCAGCATC
TCAGTCCAATATACGATCCAAAAGCCCCGGAGTCAGTAGACTTTTTTGTG
AGTGATCCAAGAGGATTCAAGGTCGTTGTGGATGTAACACTGACGATGGC
CGGTGTACAGAGTACGAACAGCTCGAATTCCAAGCTGCTTCTCAACTCTC
CTGTTCGGAATATTGTTTACGGCAAGAAGAGAGCACTTGTCATCACCCGT
GCCGGAGAAAAAATATATGGGTCAGCGGTTGTGTCGACTCTGCCTCTAGG
AGTGTTGCAAGCCTCGCTATTTTCAAATCCAATGTATCCTAACGCTGTTC
GATTTACCCCTCATTTATCAAACGAAAGGAAACTTGCGATATCTAAGCAC
ATAATGGCAGACTATCTTAAGATACTAGTGCAATTTAGGCGGCCATTATT
CTCCGCCAAAGATCCGCTGTTTCTTATTCCAGTGAACTGTTCCGAAGGAG
GATTTGTGAGCTTGCAGAACTTGAACAAGAAGAATTACTTCCCAGGCTCA
AATGCGATCATAATTACGTCAACGGACGCATACAGTAGAGATCTAGTGTG
CATGAATCGTCAGAAGGTGCTTGTGGATGTCTTAGAGTACGTCTCGATGG
CCCTTGGCAGAGTCGTACACAAAGATGACGTCATACTCCTTGAGATACCA
CATTTTCTTCGCGATCAATATTTCAGAGGATCATACGGCGGCATATCACC
ATCAGTAACTATTCGTGATAGGGAAGAGTTCAACAAGCCTTCACAAAGTC
TATTTTTCGCTGGGGAAGCTCACAACAATAATGGTCTGAATGGGTACGTT
CACGGAGCTTGGGATTCTGGGATGTCGACAGCAAACGCCGTTTTAGAGTT
CGTGAAATGCGAGTAG
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protein sequence of Gvermi3459.t1

>Gvermi3459.t1 ID=Gvermi3459.t1|Name=Gvermi3459.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=572bp
MSILIQQKQTGLQHTAFFNYCRFSSRQKPHITTSGFRITSEIFALSIPFM
MQCFFRTNHHSRCSIIIMIIFLMHCQSSCSHSVSYHSSLAKKLNESCQIE
PVIIVGAGIAGAKVALELSKQNIPFIIIEATDRVGGRMRSVTVPSASCSE
CSALRTGFQYELGANWMQGYRKGVPFFDFVDKYVKLKGTATDFDDTYFVQ
NGSYVSNAVANPVWERFEDAMSKVYESTRTMKKSSSSEQYLNLASALLYV
AGYEALHPIEHAAMRSIIDFEYAVPANDVSAQHLSPIYDPKAPESVDFFV
SDPRGFKVVVDVTLTMAGVQSTNSSNSKLLLNSPVRNIVYGKKRALVITR
AGEKIYGSAVVSTLPLGVLQASLFSNPMYPNAVRFTPHLSNERKLAISKH
IMADYLKILVQFRRPLFSAKDPLFLIPVNCSEGGFVSLQNLNKKNYFPGS
NAIIITSTDAYSRDLVCMNRQKVLVDVLEYVSMALGRVVHKDDVILLEIP
HFLRDQYFRGSYGGISPSVTIRDREEFNKPSQSLFFAGEAHNNNGLNGYV
HGAWDSGMSTANAVLEFVKCE*
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mRNA from alignment at ScGOVlb_41:1748083..1749798-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3459.t1 ID=Gvermi3459.t1|Name=Gvermi3459.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1716bp|location=Sequence derived from alignment at ScGOVlb_41:1748083..1749798- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCATTCTCATACAGCAGAAACAAACAGGTCTTCAGCATACCGCCTT
CTTCAATTACTGCCGTTTTTCCTCTCGGCAGAAACCGCATATCACTACAT
CGGGTTTTCGTATAACATCCGAAATCTTTGCCCTGAGCATCCCGTTCATG
ATGCAGTGTTTTTTCCGCACAAACCACCATTCACGATGTTCTATTATTAT
TATGATCATTTTCTTAATGCACTGCCAAAGCTCATGCTCTCATTCAGTAT
CCTATCATTCTTCTCTTGCGAAGAAGCTGAATGAATCATGTCAGATAGAA
CCCGTGATTATTGTGGGTGCTGGGATTGCTGGTGCGAAGGTTGCCCTCGA
ACTGTCAAAGCAAAACATTCCTTTTATTATAATCGAAGCTACTGACAGAG
TGGGCGGCCGCATGAGATCTGTTACCGTCCCATCGGCATCATGCTCTGAG
TGTTCGGCTCTTCGCACAGGATTTCAGTATGAATTGGGAGCGAATTGGAT
GCAAGGGTACCGCAAGGGTGTTCCATTTTTTGACTTTGTTGACAAGTACG
TTAAACTGAAAGGCACTGCTACTGACTTTGATGACACCTATTTTGTTCAA
AATGGAAGCTATGTGAGCAATGCAGTTGCAAATCCAGTTTGGGAACGCTT
TGAAGACGCAATGTCAAAAGTGTATGAGTCAACGAGGACAATGAAGAAAA
GTTCCTCCAGCGAGCAATATCTGAACCTCGCTTCTGCACTATTGTATGTG
GCCGGATATGAAGCTCTTCACCCTATAGAGCATGCTGCTATGCGATCTAT
AATCGACTTTGAGTATGCAGTACCCGCAAACGATGTATCTGCTCAGCATC
TCAGTCCAATATACGATCCAAAAGCCCCGGAGTCAGTAGACTTTTTTGTG
AGTGATCCAAGAGGATTCAAGGTCGTTGTGGATGTAACACTGACGATGGC
CGGTGTACAGAGTACGAACAGCTCGAATTCCAAGCTGCTTCTCAACTCTC
CTGTTCGGAATATTGTTTACGGCAAGAAGAGAGCACTTGTCATCACCCGT
GCCGGAGAAAAAATATATGGGTCAGCGGTTGTGTCGACTCTGCCTCTAGG
AGTGTTGCAAGCCTCGCTATTTTCAAATCCAATGTATCCTAACGCTGTTC
GATTTACCCCTCATTTATCAAACGAAAGGAAACTTGCGATATCTAAGCAC
ATAATGGCAGACTATCTTAAGATACTAGTGCAATTTAGGCGGCCATTATT
CTCCGCCAAAGATCCGCTGTTTCTTATTCCAGTGAACTGTTCCGAAGGAG
GATTTGTGAGCTTGCAGAACTTGAACAAGAAGAATTACTTCCCAGGCTCA
AATGCGATCATAATTACGTCAACGGACGCATACAGTAGAGATCTAGTGTG
CATGAATCGTCAGAAGGTGCTTGTGGATGTCTTAGAGTACGTCTCGATGG
CCCTTGGCAGAGTCGTACACAAAGATGACGTCATACTCCTTGAGATACCA
CATTTTCTTCGCGATCAATATTTCAGAGGATCATACGGCGGCATATCACC
ATCAGTAACTATTCGTGATAGGGAAGAGTTCAACAAGCCTTCACAAAGTC
TATTTTTCGCTGGGGAAGCTCACAACAATAATGGTCTGAATGGGTACGTT
CACGGAGCTTGGGATTCTGGGATGTCGACAGCAAACGCCGTTTTAGAGTT
CGTGAAATGCGAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_41:1748083..1749798-

>Gvermi3459.t1 ID=Gvermi3459.t1|Name=Gvermi3459.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1716bp|location=Sequence derived from alignment at ScGOVlb_41:1748083..1749798- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCATTCTCATACAGCAGAAACAAACAGGTCTTCAGCATACCGCCTT
CTTCAATTACTGCCGTTTTTCCTCTCGGCAGAAACCGCATATCACTACAT
CGGGTTTTCGTATAACATCCGAAATCTTTGCCCTGAGCATCCCGTTCATG
ATGCAGTGTTTTTTCCGCACAAACCACCATTCACGATGTTCTATTATTAT
TATGATCATTTTCTTAATGCACTGCCAAAGCTCATGCTCTCATTCAGTAT
CCTATCATTCTTCTCTTGCGAAGAAGCTGAATGAATCATGTCAGATAGAA
CCCGTGATTATTGTGGGTGCTGGGATTGCTGGTGCGAAGGTTGCCCTCGA
ACTGTCAAAGCAAAACATTCCTTTTATTATAATCGAAGCTACTGACAGAG
TGGGCGGCCGCATGAGATCTGTTACCGTCCCATCGGCATCATGCTCTGAG
TGTTCGGCTCTTCGCACAGGATTTCAGTATGAATTGGGAGCGAATTGGAT
GCAAGGGTACCGCAAGGGTGTTCCATTTTTTGACTTTGTTGACAAGTACG
TTAAACTGAAAGGCACTGCTACTGACTTTGATGACACCTATTTTGTTCAA
AATGGAAGCTATGTGAGCAATGCAGTTGCAAATCCAGTTTGGGAACGCTT
TGAAGACGCAATGTCAAAAGTGTATGAGTCAACGAGGACAATGAAGAAAA
GTTCCTCCAGCGAGCAATATCTGAACCTCGCTTCTGCACTATTGTATGTG
GCCGGATATGAAGCTCTTCACCCTATAGAGCATGCTGCTATGCGATCTAT
AATCGACTTTGAGTATGCAGTACCCGCAAACGATGTATCTGCTCAGCATC
TCAGTCCAATATACGATCCAAAAGCCCCGGAGTCAGTAGACTTTTTTGTG
AGTGATCCAAGAGGATTCAAGGTCGTTGTGGATGTAACACTGACGATGGC
CGGTGTACAGAGTACGAACAGCTCGAATTCCAAGCTGCTTCTCAACTCTC
CTGTTCGGAATATTGTTTACGGCAAGAAGAGAGCACTTGTCATCACCCGT
GCCGGAGAAAAAATATATGGGTCAGCGGTTGTGTCGACTCTGCCTCTAGG
AGTGTTGCAAGCCTCGCTATTTTCAAATCCAATGTATCCTAACGCTGTTC
GATTTACCCCTCATTTATCAAACGAAAGGAAACTTGCGATATCTAAGCAC
ATAATGGCAGACTATCTTAAGATACTAGTGCAATTTAGGCGGCCATTATT
CTCCGCCAAAGATCCGCTGTTTCTTATTCCAGTGAACTGTTCCGAAGGAG
GATTTGTGAGCTTGCAGAACTTGAACAAGAAGAATTACTTCCCAGGCTCA
AATGCGATCATAATTACGTCAACGGACGCATACAGTAGAGATCTAGTGTG
CATGAATCGTCAGAAGGTGCTTGTGGATGTCTTAGAGTACGTCTCGATGG
CCCTTGGCAGAGTCGTACACAAAGATGACGTCATACTCCTTGAGATACCA
CATTTTCTTCGCGATCAATATTTCAGAGGATCATACGGCGGCATATCACC
ATCAGTAACTATTCGTGATAGGGAAGAGTTCAACAAGCCTTCACAAAGTC
TATTTTTCGCTGGGGAAGCTCACAACAATAATGGTCTGAATGGGTACGTT
CACGGAGCTTGGGATTCTGGGATGTCGACAGCAAACGCCGTTTTAGAGTT
CGTGAAATGCGAGTAG
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