Gvermi3448.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi3448.t1
Unique Name	Gvermi3448.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	307

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_41	contig	ScGOVlb_41:1462383..1463303 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	79684.XP_005362189.1
Preferred name	TSTD2
PFAMs	Rhodanese,Rhodanese_C
Max annot lvl	33208\|Metazoa
Evalue	2.7e-57
EggNOG OGs	COG1054@1\|root,2QSQK@2759\|Eukaryota,39W3N@33154\|Opisthokonta,3BGIY@33208\|Metazoa,3D119@33213\|Bilateria,48128@7711\|Chordata,4968F@7742\|Vertebrata,3J51E@40674\|Mammalia,35G64@314146\|Euarchontoglires,4Q2NX@9989\|Rodentia
Description	Rhodanase C-terminal
COG category	H

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi3448	Gvermi3448	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_41 1462383..1463303 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3448.t1.start1	Gvermi3448.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_41 1462383..1462385 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3448.t1.CDS1	Gvermi3448.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_41 1462383..1463303 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3448.t1.exon1	Gvermi3448.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_41 1462383..1463303 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3448.t1.stop1	Gvermi3448.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_41 1463301..1463303 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3448.t1	Gvermi3448.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_41 1462383..1463303 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_41:1462383..1463303+
coding sequence from alignment at ScGOVlb_41:1462383..1463303+

mRNA sequence

>Gvermi3448.t1 ID=Gvermi3448.t1|Name=Gvermi3448.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=307bp
MPISLFYHYTELQSPSSIARDVISFGKERKLAGRIRISTEGINGTFGGSE
DDVRAFHDRIKTLLSNACIDFKVSSGNASNFPEGWKVRICTELVTMGITA
EQTWWKQVAPHIAPDQFRDELIKQFTARKLIVLDVRNQYESAIGRFKGAI
LPPIRQFSDFPRFVESNRYLFRGQRVLMYCTGGIRCERASAYLLNIGIAD
SVAQLRGGIDRFLNRFPDGGDVFEGKNLVFDTRMVQPINNATIVGRCVVC
CSEWDDYSNNVRCAHCRSRLLICANKSCLELLATNKGGKCAGCNVLVTKA
AAALGP*

spliced messenger RNA

>Gvermi3448.t1 ID=Gvermi3448.t1|Name=Gvermi3448.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=921bp|location=Sequence derived from alignment at ScGOVlb_41:1462383..1463303+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCATCTCACTTTTCTATCACTACACTGAACTTCAAAGCCCTTCCTC
AATTGCTCGTGACGTGATATCATTTGGCAAAGAGCGCAAATTGGCCGGAA
GAATAAGAATTAGCACGGAAGGAATCAACGGCACATTTGGTGGTTCTGAG
GATGATGTACGAGCGTTTCACGACCGCATTAAAACGCTCCTCAGCAATGC
CTGCATTGACTTCAAGGTCTCAAGTGGCAACGCATCCAATTTTCCAGAGG
GATGGAAGGTCCGAATTTGCACAGAACTGGTGACCATGGGTATCACGGCC
GAACAGACTTGGTGGAAACAAGTGGCACCCCATATTGCCCCCGACCAGTT
TCGTGACGAGCTCATCAAACAGTTCACCGCACGAAAGCTTATCGTTCTTG
ATGTTCGTAATCAATATGAGTCTGCAATTGGCCGATTCAAAGGTGCGATA
CTACCACCAATAAGACAGTTCTCCGACTTTCCTCGATTCGTTGAAAGCAA
CAGGTATTTGTTTCGAGGGCAACGCGTTTTGATGTACTGCACAGGCGGCA
TACGATGTGAAAGAGCGTCTGCGTATTTGTTAAATATCGGAATCGCTGAT
TCCGTAGCGCAATTGCGTGGAGGAATCGACCGCTTTCTTAACCGATTTCC
AGACGGTGGTGACGTCTTCGAAGGGAAAAATCTGGTGTTTGATACGAGAA
TGGTGCAACCGATAAATAATGCAACGATTGTCGGGCGTTGTGTAGTGTGC
TGTTCCGAATGGGATGACTATTCGAACAATGTGCGATGCGCTCACTGCAG
GTCAAGATTACTCATTTGTGCGAATAAGTCTTGTTTGGAACTGCTCGCAA
CAAACAAGGGCGGGAAGTGTGCTGGGTGTAATGTCCTCGTGACGAAAGCG
GCAGCAGCCTTGGGCCCGTGA

protein sequence of Gvermi3448.t1

>Gvermi3448.t1 ID=Gvermi3448.t1|Name=Gvermi3448.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=307bp
MPISLFYHYTELQSPSSIARDVISFGKERKLAGRIRISTEGINGTFGGSE
DDVRAFHDRIKTLLSNACIDFKVSSGNASNFPEGWKVRICTELVTMGITA
EQTWWKQVAPHIAPDQFRDELIKQFTARKLIVLDVRNQYESAIGRFKGAI
LPPIRQFSDFPRFVESNRYLFRGQRVLMYCTGGIRCERASAYLLNIGIAD
SVAQLRGGIDRFLNRFPDGGDVFEGKNLVFDTRMVQPINNATIVGRCVVC
CSEWDDYSNNVRCAHCRSRLLICANKSCLELLATNKGGKCAGCNVLVTKA
AAALGP*

mRNA from alignment at ScGOVlb_41:1462383..1463303+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi3448.t1 ID=Gvermi3448.t1|Name=Gvermi3448.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=921bp|location=Sequence derived from alignment at ScGOVlb_41:1462383..1463303+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCATCTCACTTTTCTATCACTACACTGAACTTCAAAGCCCTTCCTC
AATTGCTCGTGACGTGATATCATTTGGCAAAGAGCGCAAATTGGCCGGAA
GAATAAGAATTAGCACGGAAGGAATCAACGGCACATTTGGTGGTTCTGAG
GATGATGTACGAGCGTTTCACGACCGCATTAAAACGCTCCTCAGCAATGC
CTGCATTGACTTCAAGGTCTCAAGTGGCAACGCATCCAATTTTCCAGAGG
GATGGAAGGTCCGAATTTGCACAGAACTGGTGACCATGGGTATCACGGCC
GAACAGACTTGGTGGAAACAAGTGGCACCCCATATTGCCCCCGACCAGTT
TCGTGACGAGCTCATCAAACAGTTCACCGCACGAAAGCTTATCGTTCTTG
ATGTTCGTAATCAATATGAGTCTGCAATTGGCCGATTCAAAGGTGCGATA
CTACCACCAATAAGACAGTTCTCCGACTTTCCTCGATTCGTTGAAAGCAA
CAGGTATTTGTTTCGAGGGCAACGCGTTTTGATGTACTGCACAGGCGGCA
TACGATGTGAAAGAGCGTCTGCGTATTTGTTAAATATCGGAATCGCTGAT
TCCGTAGCGCAATTGCGTGGAGGAATCGACCGCTTTCTTAACCGATTTCC
AGACGGTGGTGACGTCTTCGAAGGGAAAAATCTGGTGTTTGATACGAGAA
TGGTGCAACCGATAAATAATGCAACGATTGTCGGGCGTTGTGTAGTGTGC
TGTTCCGAATGGGATGACTATTCGAACAATGTGCGATGCGCTCACTGCAG
GTCAAGATTACTCATTTGTGCGAATAAGTCTTGTTTGGAACTGCTCGCAA
CAAACAAGGGCGGGAAGTGTGCTGGGTGTAATGTCCTCGTGACGAAAGCG
GCAGCAGCCTTGGGCCCGTGA

Coding sequence (CDS) from alignment at ScGOVlb_41:1462383..1463303+

>Gvermi3448.t1 ID=Gvermi3448.t1|Name=Gvermi3448.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=921bp|location=Sequence derived from alignment at ScGOVlb_41:1462383..1463303+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCATCTCACTTTTCTATCACTACACTGAACTTCAAAGCCCTTCCTC
AATTGCTCGTGACGTGATATCATTTGGCAAAGAGCGCAAATTGGCCGGAA
GAATAAGAATTAGCACGGAAGGAATCAACGGCACATTTGGTGGTTCTGAG
GATGATGTACGAGCGTTTCACGACCGCATTAAAACGCTCCTCAGCAATGC
CTGCATTGACTTCAAGGTCTCAAGTGGCAACGCATCCAATTTTCCAGAGG
GATGGAAGGTCCGAATTTGCACAGAACTGGTGACCATGGGTATCACGGCC
GAACAGACTTGGTGGAAACAAGTGGCACCCCATATTGCCCCCGACCAGTT
TCGTGACGAGCTCATCAAACAGTTCACCGCACGAAAGCTTATCGTTCTTG
ATGTTCGTAATCAATATGAGTCTGCAATTGGCCGATTCAAAGGTGCGATA
CTACCACCAATAAGACAGTTCTCCGACTTTCCTCGATTCGTTGAAAGCAA
CAGGTATTTGTTTCGAGGGCAACGCGTTTTGATGTACTGCACAGGCGGCA
TACGATGTGAAAGAGCGTCTGCGTATTTGTTAAATATCGGAATCGCTGAT
TCCGTAGCGCAATTGCGTGGAGGAATCGACCGCTTTCTTAACCGATTTCC
AGACGGTGGTGACGTCTTCGAAGGGAAAAATCTGGTGTTTGATACGAGAA
TGGTGCAACCGATAAATAATGCAACGATTGTCGGGCGTTGTGTAGTGTGC
TGTTCCGAATGGGATGACTATTCGAACAATGTGCGATGCGCTCACTGCAG
GTCAAGATTACTCATTTGTGCGAATAAGTCTTGTTTGGAACTGCTCGCAA
CAAACAAGGGCGGGAAGTGTGCTGGGTGTAATGTCCTCGTGACGAAAGCG
GCAGCAGCCTTGGGCCCGTGA