Gvermi3446.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi3446.t2
Unique Name	Gvermi3446.t2
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	253

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_41	contig	ScGOVlb_41:1452518..1453276 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	926554.KI912654_gene4469
PFAMs	Kelch_1,Malectin,NPCBM
Max annot lvl	1297\|Deinococcus-Thermus
Evalue	4.43e-41
EggNOG OGs	COG2133@1\|root,COG3055@1\|root,COG2133@2\|Bacteria,COG3055@2\|Bacteria,1WM1P@1297\|Deinococcus-Thermus
Description	Kelch
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi3446	Gvermi3446	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_41 1452230..1453276 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3446.t2.start1	Gvermi3446.t2.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_41 1452518..1452520 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3446.t2.CDS1	Gvermi3446.t2.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_41 1452518..1453276 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3446.t2.exon1	Gvermi3446.t2.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_41 1452518..1453276 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3446.t2.stop1	Gvermi3446.t2.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_41 1453274..1453276 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3446.t2	Gvermi3446.t2	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_41 1452518..1453276 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_41:1452518..1453276+
coding sequence from alignment at ScGOVlb_41:1452518..1453276+

mRNA sequence

>Gvermi3446.t2 ID=Gvermi3446.t2|Name=Gvermi3446.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=253bp
MPRPLTHCAQATVGPSLYLCGGFLAQAPGKSVSDCYVFSMSSNVWKSIPS
LPVSVGGGSMVHIKPLNALFYAGGMNRKEGQYHGTDLPHTFMLSLNDMAA
GWKRKADMPNPRNHMAAAVAASRYFFLGGQHSDDEHAGNQPTVNEYVYWS
DKWFTKAPIPQPLGHIVASTFSYWNGILVVGGVTNGRKQSPDVYYYDAPS
DSWSIIGVFPRSVQSPVCGLSYLRIHCSTGLGKPGWPGQSYYRKLTRPLP
VH*

spliced messenger RNA

>Gvermi3446.t2 ID=Gvermi3446.t2|Name=Gvermi3446.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=759bp|location=Sequence derived from alignment at ScGOVlb_41:1452518..1453276+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
atgccgcgcccgctcacccactgtgcgcAGGCCACTGTTGGCCCCTCGCT
CTACCTCTGTGGCGGCTTTCTCGCCCAGGCCCCCGGTAAGTCTGTGAGCG
ATTGCTATGTGTTTTCCATGTCGTCCAACGTGTGGAAATCTATTCCAAGC
CTGCCCGTGTCCGTTGGAGGCGGCTCCATGGTACACATTAAGCCTCTCAA
CGCACTGTTCTATGCGGGTGGTATGAATCGCAAAGAGGGCCAATATCATG
GAACTGACCTGCCGCACACCTTCATGCTGTCGCTCAACGATATGGCCGCG
GGCTGGAAACGCAAGGCAGACATGCCCAATCCCCGCAACCACATGGCTGC
CGCCGTTGCTGCCTCGCGTTACTTTTTCTTGGGCGGCCAGCACTCCGACG
ATGAGCATGCTGGCAACCAGCCCACCGTCAACGAGTACGTGTACTGGAGC
GACAAGTGGTTCACTAAGGCCCCGATTCCTCAGCCGTTGGGCCACATTGT
TGCAAGCACCTTTTCGTACTGGAACGGCATCCTGGTCGTCGGCGGTGTTA
CCAACGGCCGCAAACAGTCTCCAGACGTTTACTATTATGATGCGCCGTCT
GATTCATGGTCGATTATTGGCGTCTTTCCGCGCAGTGTGCAGAGCCCAGT
TTGCGGGCTTTCATACCTCCGCATCCATTGCTCCACCGGTCTCGGAAAGC
CCGGTTGGCCTGGCCAGAGCTATTACCGCAAACTCACGCGCCCTCTCCCA
GTGCATTGA

protein sequence of Gvermi3446.t2

>Gvermi3446.t2 ID=Gvermi3446.t2|Name=Gvermi3446.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=253bp
MPRPLTHCAQATVGPSLYLCGGFLAQAPGKSVSDCYVFSMSSNVWKSIPS
LPVSVGGGSMVHIKPLNALFYAGGMNRKEGQYHGTDLPHTFMLSLNDMAA
GWKRKADMPNPRNHMAAAVAASRYFFLGGQHSDDEHAGNQPTVNEYVYWS
DKWFTKAPIPQPLGHIVASTFSYWNGILVVGGVTNGRKQSPDVYYYDAPS
DSWSIIGVFPRSVQSPVCGLSYLRIHCSTGLGKPGWPGQSYYRKLTRPLP
VH*

mRNA from alignment at ScGOVlb_41:1452518..1453276+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi3446.t2 ID=Gvermi3446.t2|Name=Gvermi3446.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=759bp|location=Sequence derived from alignment at ScGOVlb_41:1452518..1453276+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgccgcgcccgctcacccactgtgcgcAGGCCACTGTTGGCCCCTCGCT
CTACCTCTGTGGCGGCTTTCTCGCCCAGGCCCCCGGTAAGTCTGTGAGCG
ATTGCTATGTGTTTTCCATGTCGTCCAACGTGTGGAAATCTATTCCAAGC
CTGCCCGTGTCCGTTGGAGGCGGCTCCATGGTACACATTAAGCCTCTCAA
CGCACTGTTCTATGCGGGTGGTATGAATCGCAAAGAGGGCCAATATCATG
GAACTGACCTGCCGCACACCTTCATGCTGTCGCTCAACGATATGGCCGCG
GGCTGGAAACGCAAGGCAGACATGCCCAATCCCCGCAACCACATGGCTGC
CGCCGTTGCTGCCTCGCGTTACTTTTTCTTGGGCGGCCAGCACTCCGACG
ATGAGCATGCTGGCAACCAGCCCACCGTCAACGAGTACGTGTACTGGAGC
GACAAGTGGTTCACTAAGGCCCCGATTCCTCAGCCGTTGGGCCACATTGT
TGCAAGCACCTTTTCGTACTGGAACGGCATCCTGGTCGTCGGCGGTGTTA
CCAACGGCCGCAAACAGTCTCCAGACGTTTACTATTATGATGCGCCGTCT
GATTCATGGTCGATTATTGGCGTCTTTCCGCGCAGTGTGCAGAGCCCAGT
TTGCGGGCTTTCATACCTCCGCATCCATTGCTCCACCGGTCTCGGAAAGC
CCGGTTGGCCTGGCCAGAGCTATTACCGCAAACTCACGCGCCCTCTCCCA
GTGCATTGA

Coding sequence (CDS) from alignment at ScGOVlb_41:1452518..1453276+

>Gvermi3446.t2 ID=Gvermi3446.t2|Name=Gvermi3446.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=759bp|location=Sequence derived from alignment at ScGOVlb_41:1452518..1453276+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgccgcgcccgctcacccactgtgcgcAGGCCACTGTTGGCCCCTCGCT
CTACCTCTGTGGCGGCTTTCTCGCCCAGGCCCCCGGTAAGTCTGTGAGCG
ATTGCTATGTGTTTTCCATGTCGTCCAACGTGTGGAAATCTATTCCAAGC
CTGCCCGTGTCCGTTGGAGGCGGCTCCATGGTACACATTAAGCCTCTCAA
CGCACTGTTCTATGCGGGTGGTATGAATCGCAAAGAGGGCCAATATCATG
GAACTGACCTGCCGCACACCTTCATGCTGTCGCTCAACGATATGGCCGCG
GGCTGGAAACGCAAGGCAGACATGCCCAATCCCCGCAACCACATGGCTGC
CGCCGTTGCTGCCTCGCGTTACTTTTTCTTGGGCGGCCAGCACTCCGACG
ATGAGCATGCTGGCAACCAGCCCACCGTCAACGAGTACGTGTACTGGAGC
GACAAGTGGTTCACTAAGGCCCCGATTCCTCAGCCGTTGGGCCACATTGT
TGCAAGCACCTTTTCGTACTGGAACGGCATCCTGGTCGTCGGCGGTGTTA
CCAACGGCCGCAAACAGTCTCCAGACGTTTACTATTATGATGCGCCGTCT
GATTCATGGTCGATTATTGGCGTCTTTCCGCGCAGTGTGCAGAGCCCAGT
TTGCGGGCTTTCATACCTCCGCATCCATTGCTCCACCGGTCTCGGAAAGC
CCGGTTGGCCTGGCCAGAGCTATTACCGCAAACTCACGCGCCCTCTCCCA
GTGCATTGA