Gvermi3435.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3435.t1
Unique NameGvermi3435.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length222
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:1427393..1428058 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMS007CT
PFAMsDJ-1_PfpI
Max annot lvl2759|Eukaryota
KEGG koko:K03152
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005886,GO:0005911,GO:0006081,GO:0006082,GO:0006089,GO:0006457,GO:0006464,GO:0006517,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009100,GO:0009266,GO:0009408,GO:0009438,GO:0009506,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009657,GO:0009658,GO:0009987,GO:0010035,GO:0010038,GO:0016020,GO:0016043,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0019172,GO:0019249,GO:0019538,GO:0019752,GO:0022613,GO:0030054,GO:0030091,GO:0031090,GO:0032787,GO:0033554,GO:0034599,GO:0036211,GO:0036524,GO:0036525,GO:0042026,GO:0042180,GO:0042182,GO:0042221,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043436,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046185,GO:0046394,GO:0046686,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051596,GO:0051716,GO:0055044,GO:0061727,GO:0065007,GO:0070887,GO:0071704,GO:0071840,GO:0071944,GO:0072330,GO:0080134,GO:0080135,GO:0098588,GO:0098805,GO:0140096,GO:1900407,GO:1900409,GO:1901135,GO:1901564,GO:1901575,GO:1901576,GO:1901615,GO:1901617,GO:1902882,GO:1902884
Evalue9e-52
EggNOG OGsCOG0693@1|root,KOG2764@2759|Eukaryota
EC3.5.1.124
Descriptionguanine deglycation, methylglyoxal removal
COG categoryJ
BRITEko00000,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3435Gvermi3435Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 1427393..1428058 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3435.t1.stop1Gvermi3435.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 1427393..1427395 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3435.t1.CDS1Gvermi3435.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 1427393..1428058 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3435.t1.exon1Gvermi3435.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 1427393..1428058 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3435.t1.start1Gvermi3435.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 1428056..1428058 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3435.t1Gvermi3435.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 1427393..1428058 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3435.t1 ID=Gvermi3435.t1|Name=Gvermi3435.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=222bp
MSIEKPAFLIPSIVKIRHPRLPQTDSLRPQMATTTPRRVLVTIGKGSEEI
ETAAAVDTLRRAGADVTLASVESSLTVEMSRGMKYEADILIDKASPPYDC
IALPGGMPGAERLRDSEKLTAMLKEAAGNGGMIAAVCASPAVVLGSHGLL
EGVEATCYPAGPFREMVKKVEKGDVVLGKQGQYITATGPGTSIKWALMIV
EALYDKEKADKIASAMLVARD*
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spliced messenger RNA

>Gvermi3435.t1 ID=Gvermi3435.t1|Name=Gvermi3435.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=666bp|location=Sequence derived from alignment at ScGOVlb_41:1427393..1428058- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCATCGAGAAGCCGGCGTTTTTGATCCCGAGCATTGTAAAGATTCG
CCACCCGCGTCTTCCGCAAACAGATAGTCTCCGCCCTCAAATGGCTACTA
CTACCCCTCGCCGCGTACTGGTCACCATTGGCAAAGGCTCCGAGGAGATT
GAAACGGCCGCCGCTGTCGACACTTTACGAAGAGCCGGCGCCGATGTGAC
CCTTGCGTCCGTCGAATCCTCGCTCACTGTGGAAATGTCTCGGGGCATGA
AATACGAGGCTGATATTCTCATCGATAAGGCGTCTCCCCCGTACGATTGC
ATAGCCCTGCCTGGTGGTATGCCCGGTGCTGAGCGTTTGCGCGATTCTGA
GAAACTCACAGCAATGCTAAAGGAAGCTGCCGGCAATGGGGGTATGATTG
CTGCTGTCTGTGCGTCTCCAGCTGTCGTGCTGGGCTCTCACGGATTGCTT
GAGGGGGTTGAAGCCACTTGTTATCCGGCTGGTCCCTTCAGAGAAATGGT
GAAAAAGGTTGAGAAGGGAGATGTGGTGTTGGGAAAACAAGGTCAATACA
TAACGGCCACCGGGCCTGGAACTTCAATCAAATGGGCACTGATGATAGTC
GAAGCGCTGTACGACAAGGAGAAGGCGGACAAGATTGCAAGCGCTATGCT
AGTTGCGCGCGATTAA
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protein sequence of Gvermi3435.t1

>Gvermi3435.t1 ID=Gvermi3435.t1|Name=Gvermi3435.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=222bp
MSIEKPAFLIPSIVKIRHPRLPQTDSLRPQMATTTPRRVLVTIGKGSEEI
ETAAAVDTLRRAGADVTLASVESSLTVEMSRGMKYEADILIDKASPPYDC
IALPGGMPGAERLRDSEKLTAMLKEAAGNGGMIAAVCASPAVVLGSHGLL
EGVEATCYPAGPFREMVKKVEKGDVVLGKQGQYITATGPGTSIKWALMIV
EALYDKEKADKIASAMLVARD*
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mRNA from alignment at ScGOVlb_41:1427393..1428058-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3435.t1 ID=Gvermi3435.t1|Name=Gvermi3435.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=666bp|location=Sequence derived from alignment at ScGOVlb_41:1427393..1428058- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCATCGAGAAGCCGGCGTTTTTGATCCCGAGCATTGTAAAGATTCG
CCACCCGCGTCTTCCGCAAACAGATAGTCTCCGCCCTCAAATGGCTACTA
CTACCCCTCGCCGCGTACTGGTCACCATTGGCAAAGGCTCCGAGGAGATT
GAAACGGCCGCCGCTGTCGACACTTTACGAAGAGCCGGCGCCGATGTGAC
CCTTGCGTCCGTCGAATCCTCGCTCACTGTGGAAATGTCTCGGGGCATGA
AATACGAGGCTGATATTCTCATCGATAAGGCGTCTCCCCCGTACGATTGC
ATAGCCCTGCCTGGTGGTATGCCCGGTGCTGAGCGTTTGCGCGATTCTGA
GAAACTCACAGCAATGCTAAAGGAAGCTGCCGGCAATGGGGGTATGATTG
CTGCTGTCTGTGCGTCTCCAGCTGTCGTGCTGGGCTCTCACGGATTGCTT
GAGGGGGTTGAAGCCACTTGTTATCCGGCTGGTCCCTTCAGAGAAATGGT
GAAAAAGGTTGAGAAGGGAGATGTGGTGTTGGGAAAACAAGGTCAATACA
TAACGGCCACCGGGCCTGGAACTTCAATCAAATGGGCACTGATGATAGTC
GAAGCGCTGTACGACAAGGAGAAGGCGGACAAGATTGCAAGCGCTATGCT
AGTTGCGCGCGATTAA
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Coding sequence (CDS) from alignment at ScGOVlb_41:1427393..1428058-

>Gvermi3435.t1 ID=Gvermi3435.t1|Name=Gvermi3435.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=666bp|location=Sequence derived from alignment at ScGOVlb_41:1427393..1428058- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCATCGAGAAGCCGGCGTTTTTGATCCCGAGCATTGTAAAGATTCG
CCACCCGCGTCTTCCGCAAACAGATAGTCTCCGCCCTCAAATGGCTACTA
CTACCCCTCGCCGCGTACTGGTCACCATTGGCAAAGGCTCCGAGGAGATT
GAAACGGCCGCCGCTGTCGACACTTTACGAAGAGCCGGCGCCGATGTGAC
CCTTGCGTCCGTCGAATCCTCGCTCACTGTGGAAATGTCTCGGGGCATGA
AATACGAGGCTGATATTCTCATCGATAAGGCGTCTCCCCCGTACGATTGC
ATAGCCCTGCCTGGTGGTATGCCCGGTGCTGAGCGTTTGCGCGATTCTGA
GAAACTCACAGCAATGCTAAAGGAAGCTGCCGGCAATGGGGGTATGATTG
CTGCTGTCTGTGCGTCTCCAGCTGTCGTGCTGGGCTCTCACGGATTGCTT
GAGGGGGTTGAAGCCACTTGTTATCCGGCTGGTCCCTTCAGAGAAATGGT
GAAAAAGGTTGAGAAGGGAGATGTGGTGTTGGGAAAACAAGGTCAATACA
TAACGGCCACCGGGCCTGGAACTTCAATCAAATGGGCACTGATGATAGTC
GAAGCGCTGTACGACAAGGAGAAGGCGGACAAGATTGCAAGCGCTATGCT
AGTTGCGCGCGATTAA
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