Gvermi3403.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3403.t1
Unique NameGvermi3403.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length280
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:1354512..1355351 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4558.Sb04g029070.1
PFAMstRNA-synt_1g,tRNA_bind
Max annot lvl35493|Streptophyta
KEGG rclassRC00055,RC00523
KEGG koko:K01874
KEGG ReactionR03659,R04773
KEGG Pathwayko00450,ko00970,map00450,map00970
KEGG ModuleM00359,M00360
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010035,GO:0010038,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0042221,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046686,GO:0050896,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576
Evalue4.69e-48
EggNOG OGsCOG0143@1|root,KOG1247@2759|Eukaryota,KOG2241@2759|Eukaryota,37SYT@33090|Viridiplantae,3G9MH@35493|Streptophyta,3KM4I@4447|Liliopsida,3IQ81@38820|Poales
EC6.1.1.10
DescriptionBelongs to the class-I aminoacyl-tRNA synthetase family
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3403Gvermi3403Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 1354512..1355351 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3403.t1.stop1Gvermi3403.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 1354512..1354514 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3403.t1.CDS1Gvermi3403.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 1354512..1355351 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3403.t1.exon1Gvermi3403.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 1354512..1355351 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3403.t1.start1Gvermi3403.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 1355349..1355351 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3403.t1Gvermi3403.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 1354512..1355351 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3403.t1 ID=Gvermi3403.t1|Name=Gvermi3403.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=280bp
MNNPGFIASTATSLWRSSAAKISTETVGERMVSLVWSGRPSSVFTVLYAP
AGAMFRSRRIVAHPRVKLTGLKPGVPYEVQVTGNEFEASTSFTTVATAES
PGAVSTDGASPELPMTEISRLEIRVGKIVECEKHPDADSLYVEKIDVGEE
KPRTIVSGLVKYVPLEKMIDRTVVVLCNLKPRAMRGVTSHGMLLCVSNED
RTAVDPLSAPADAPIGELVTFKGHKSAPIDPSNRATKAFDRIADGLKTNQ
EGVAMFEDVPFSTSAGACFSPEKLVGSIS*
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spliced messenger RNA

>Gvermi3403.t1 ID=Gvermi3403.t1|Name=Gvermi3403.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=840bp|location=Sequence derived from alignment at ScGOVlb_41:1354512..1355351- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATAACCCAGGGTTCATCGCTTCCACAGCAACGTCTTTGTGGCGATC
GTCAGCGGCCAAGATCTCCACGGAGACGGTCGGAGAGCGAATGGTTTCTT
TGGTGTGGTCAGGGAGGCCGAGCAGTGTCTTTACAGTTTTGTACGCACCT
GCTGGTGCAATGTTTCGGTCGCGGAGGATTGTTGCTCATCCTCGAGTAAA
ACTCACAGGCTTGAAACCGGGTGTGCCGTACGAAGTTCAGGTGACCGGCA
ATGAATTCGAAGCGTCAACGTCGTTCACAACGGTTGCAACAGCGGAATCC
CCTGGTGCCGTGAGCACGGATGGAGCCTCGCCCGAGCTGCCCATGACGGA
AATCTCTCGCCTGGAGATACGAGTTGGCAAAATTGTAGAGTGCGAAAAGC
ATCCCGATGCGGATTCCCTCTACGTGGAAAAGATTGATGTCGGAGAAGAA
AAGCCTCGTACTATTGTTTCCGGACTGGTCAAGTACGTACCGCTGGAGAA
AATGATCGATCGCACAGTCGTTGTCCTATGCAATTTAAAGCCGAGGGCTA
TGCGTGGCGTAACCAGCCACGGGATGCTTCTGTGCGTTTCCAACGAAGAT
CGCACTGCCGTTGATCCCTTGTCGGCACCAGCTGATGCGCCGATCGGAGA
ACTCGTTACGTTTAAGGGACATAAGTCGGCTCCCATTGATCCGAGCAACA
GAGCTACAAAGGCATTTGACAGAATTGCAGATGGCCTCAAGACCAACCAA
GAAGGCGTAGCCATGTTTGAAGATGTTCCGTTTTCGACAAGCGCCGGGGC
ATGTTTTTCGCCGGAGAAGCTTGTCGGGTCGATATCCTAA
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protein sequence of Gvermi3403.t1

>Gvermi3403.t1 ID=Gvermi3403.t1|Name=Gvermi3403.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=280bp
MNNPGFIASTATSLWRSSAAKISTETVGERMVSLVWSGRPSSVFTVLYAP
AGAMFRSRRIVAHPRVKLTGLKPGVPYEVQVTGNEFEASTSFTTVATAES
PGAVSTDGASPELPMTEISRLEIRVGKIVECEKHPDADSLYVEKIDVGEE
KPRTIVSGLVKYVPLEKMIDRTVVVLCNLKPRAMRGVTSHGMLLCVSNED
RTAVDPLSAPADAPIGELVTFKGHKSAPIDPSNRATKAFDRIADGLKTNQ
EGVAMFEDVPFSTSAGACFSPEKLVGSIS*
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mRNA from alignment at ScGOVlb_41:1354512..1355351-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3403.t1 ID=Gvermi3403.t1|Name=Gvermi3403.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=840bp|location=Sequence derived from alignment at ScGOVlb_41:1354512..1355351- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATAACCCAGGGTTCATCGCTTCCACAGCAACGTCTTTGTGGCGATC
GTCAGCGGCCAAGATCTCCACGGAGACGGTCGGAGAGCGAATGGTTTCTT
TGGTGTGGTCAGGGAGGCCGAGCAGTGTCTTTACAGTTTTGTACGCACCT
GCTGGTGCAATGTTTCGGTCGCGGAGGATTGTTGCTCATCCTCGAGTAAA
ACTCACAGGCTTGAAACCGGGTGTGCCGTACGAAGTTCAGGTGACCGGCA
ATGAATTCGAAGCGTCAACGTCGTTCACAACGGTTGCAACAGCGGAATCC
CCTGGTGCCGTGAGCACGGATGGAGCCTCGCCCGAGCTGCCCATGACGGA
AATCTCTCGCCTGGAGATACGAGTTGGCAAAATTGTAGAGTGCGAAAAGC
ATCCCGATGCGGATTCCCTCTACGTGGAAAAGATTGATGTCGGAGAAGAA
AAGCCTCGTACTATTGTTTCCGGACTGGTCAAGTACGTACCGCTGGAGAA
AATGATCGATCGCACAGTCGTTGTCCTATGCAATTTAAAGCCGAGGGCTA
TGCGTGGCGTAACCAGCCACGGGATGCTTCTGTGCGTTTCCAACGAAGAT
CGCACTGCCGTTGATCCCTTGTCGGCACCAGCTGATGCGCCGATCGGAGA
ACTCGTTACGTTTAAGGGACATAAGTCGGCTCCCATTGATCCGAGCAACA
GAGCTACAAAGGCATTTGACAGAATTGCAGATGGCCTCAAGACCAACCAA
GAAGGCGTAGCCATGTTTGAAGATGTTCCGTTTTCGACAAGCGCCGGGGC
ATGTTTTTCGCCGGAGAAGCTTGTCGGGTCGATATCCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_41:1354512..1355351-

>Gvermi3403.t1 ID=Gvermi3403.t1|Name=Gvermi3403.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=840bp|location=Sequence derived from alignment at ScGOVlb_41:1354512..1355351- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATAACCCAGGGTTCATCGCTTCCACAGCAACGTCTTTGTGGCGATC
GTCAGCGGCCAAGATCTCCACGGAGACGGTCGGAGAGCGAATGGTTTCTT
TGGTGTGGTCAGGGAGGCCGAGCAGTGTCTTTACAGTTTTGTACGCACCT
GCTGGTGCAATGTTTCGGTCGCGGAGGATTGTTGCTCATCCTCGAGTAAA
ACTCACAGGCTTGAAACCGGGTGTGCCGTACGAAGTTCAGGTGACCGGCA
ATGAATTCGAAGCGTCAACGTCGTTCACAACGGTTGCAACAGCGGAATCC
CCTGGTGCCGTGAGCACGGATGGAGCCTCGCCCGAGCTGCCCATGACGGA
AATCTCTCGCCTGGAGATACGAGTTGGCAAAATTGTAGAGTGCGAAAAGC
ATCCCGATGCGGATTCCCTCTACGTGGAAAAGATTGATGTCGGAGAAGAA
AAGCCTCGTACTATTGTTTCCGGACTGGTCAAGTACGTACCGCTGGAGAA
AATGATCGATCGCACAGTCGTTGTCCTATGCAATTTAAAGCCGAGGGCTA
TGCGTGGCGTAACCAGCCACGGGATGCTTCTGTGCGTTTCCAACGAAGAT
CGCACTGCCGTTGATCCCTTGTCGGCACCAGCTGATGCGCCGATCGGAGA
ACTCGTTACGTTTAAGGGACATAAGTCGGCTCCCATTGATCCGAGCAACA
GAGCTACAAAGGCATTTGACAGAATTGCAGATGGCCTCAAGACCAACCAA
GAAGGCGTAGCCATGTTTGAAGATGTTCCGTTTTCGACAAGCGCCGGGGC
ATGTTTTTCGCCGGAGAAGCTTGTCGGGTCGATATCCTAA
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