Gvermi3393.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3393.t1
Unique NameGvermi3393.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length210
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:1331468..1332251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7739.XP_002595777.1
Preferred namerpl10
PFAMsRibosomal_L16
Max annot lvl33208|Metazoa
KEGG koko:K02866
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0000027,GO:0000122,GO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005840,GO:0006139,GO:0006355,GO:0006357,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009790,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010941,GO:0012505,GO:0015031,GO:0015833,GO:0015934,GO:0016043,GO:0016070,GO:0016071,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034248,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0036477,GO:0042254,GO:0042255,GO:0042273,GO:0042886,GO:0042981,GO:0043025,GO:0043043,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044297,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045182,GO:0045184,GO:0045892,GO:0045934,GO:0046483,GO:0046700,GO:0046907,GO:0048513,GO:0048519,GO:0048523,GO:0048568,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051252,GO:0051253,GO:0051641,GO:0051649,GO:0060255,GO:0060322,GO:0060548,GO:0065003,GO:0065007,GO:0070727,GO:0070925,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0097458,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:1990403,GO:1990904,GO:2000112,GO:2000113,GO:2001141
Evalue1.45e-106
EggNOG OGsCOG0197@1|root,KOG0857@2759|Eukaryota,38CBG@33154|Opisthokonta,3B9AY@33208|Metazoa,3CSX1@33213|Bilateria,480F2@7711|Chordata
Descriptionembryonic brain development
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3393Gvermi3393Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 1331468..1332251 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3393.t1Gvermi3393.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 1331468..1332251 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3393.t1.stop1Gvermi3393.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 1331468..1331470 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3393.t1.CDS1Gvermi3393.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 1331468..1332087 -
Gvermi3393.t1.CDS2Gvermi3393.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 1332242..1332251 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3393.t1.exon1Gvermi3393.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 1331468..1332087 -
Gvermi3393.t1.exon2Gvermi3393.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 1332242..1332251 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3393.t1.intron1Gvermi3393.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 1332088..1332241 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3393.t1.start1Gvermi3393.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 1332249..1332251 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3393.t1 ID=Gvermi3393.t1|Name=Gvermi3393.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=210bp
MGRRPARCYRYCKNKPYPKSRYCRGVPDPKIRIFDLGRKRAGVDEFPFAA
HLVSDEKEQLSSEALEAARVACNKYMTKSCGKEAFHLRVRAHPFHVLRIN
KMLSCAGADRLQTGMRGAFGKPLGTVARVKIGQTLLSLRTKENNKAHALE
ALRRAKYKFPGRQKLYISSKWGFTRFSKEEYLELKEQGRIIADGSYCKVL
TNKGPISAF*
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spliced messenger RNA

>Gvermi3393.t1 ID=Gvermi3393.t1|Name=Gvermi3393.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=630bp|location=Sequence derived from alignment at ScGOVlb_41:1331468..1332251- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCGACGTCCGGCGCGCTGTTATCGCTACTGCAAAAACAAGCCGTA
TCCGAAATCCCGCTACTGCCGCGGTGTTCCGGACCCCAAGATCCGCATCT
TCGACCTGGGGCGTAAAAGGGCCGGCGTCGACGAATTTCCATTCGCAGCC
CATCTGGTCTCCGATGAGAAGGAACAGCTTTCCTCCGAAGCCCTCGAAGC
TGCACGCGTGGCCTGCAACAAGTACATGACGAAGTCATGCGGAAAGGAAG
CCTTCCATCTCCGAGTGCGCGCGCATCCGTTCCATGTGTTGCGTATCAAC
AAGATGCTTTCGTGTGCCGGCGCTGATCGCCTGCAGACCGGTATGCGTGG
CGCTTTTGGAAAGCCGCTCGGCACCGTCGCCCGTGTCAAGATTGGTCAAA
CGCTTCTGTCGTTGAGAACGAAGGAAAATAACAAGGCCCATGCTCTGGAG
GCGTTGCGTCGAGCAAAGTACAAGTTCCCGGGTAGGCAGAAACTCTACAT
TTCTAGCAAGTGGGGTTTCACCAGGTTTTCGAAGGAAGAGTATTTGGAGC
TCAAGGAGCAAGGTCGAATTATTGCAGACGGATCGTACTGCAAGGTCCTC
ACCAACAAAGGTCCGATCTCAGCGTTCTAG
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protein sequence of Gvermi3393.t1

>Gvermi3393.t1 ID=Gvermi3393.t1|Name=Gvermi3393.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=210bp
MGRRPARCYRYCKNKPYPKSRYCRGVPDPKIRIFDLGRKRAGVDEFPFAA
HLVSDEKEQLSSEALEAARVACNKYMTKSCGKEAFHLRVRAHPFHVLRIN
KMLSCAGADRLQTGMRGAFGKPLGTVARVKIGQTLLSLRTKENNKAHALE
ALRRAKYKFPGRQKLYISSKWGFTRFSKEEYLELKEQGRIIADGSYCKVL
TNKGPISAF*
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mRNA from alignment at ScGOVlb_41:1331468..1332251-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3393.t1 ID=Gvermi3393.t1|Name=Gvermi3393.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=784bp|location=Sequence derived from alignment at ScGOVlb_41:1331468..1332251- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGGCGACGTAAGTTATCTCATCTTTCTCGATGCGGCATCAGCTCGGT
CTTGGCCACTTTCCGCGCACTGCGCGCCAAACTGCTTCCGTGCACCTCCG
CGTTTGTGTCCTGAAATCTAGCATGCGTTACTGACTGCGATCCACTTGTC
GTTCTCTTCTTTAGGTCCGGCGCGCTGTTATCGCTACTGCAAAAACAAGC
CGTATCCGAAATCCCGCTACTGCCGCGGTGTTCCGGACCCCAAGATCCGC
ATCTTCGACCTGGGGCGTAAAAGGGCCGGCGTCGACGAATTTCCATTCGC
AGCCCATCTGGTCTCCGATGAGAAGGAACAGCTTTCCTCCGAAGCCCTCG
AAGCTGCACGCGTGGCCTGCAACAAGTACATGACGAAGTCATGCGGAAAG
GAAGCCTTCCATCTCCGAGTGCGCGCGCATCCGTTCCATGTGTTGCGTAT
CAACAAGATGCTTTCGTGTGCCGGCGCTGATCGCCTGCAGACCGGTATGC
GTGGCGCTTTTGGAAAGCCGCTCGGCACCGTCGCCCGTGTCAAGATTGGT
CAAACGCTTCTGTCGTTGAGAACGAAGGAAAATAACAAGGCCCATGCTCT
GGAGGCGTTGCGTCGAGCAAAGTACAAGTTCCCGGGTAGGCAGAAACTCT
ACATTTCTAGCAAGTGGGGTTTCACCAGGTTTTCGAAGGAAGAGTATTTG
GAGCTCAAGGAGCAAGGTCGAATTATTGCAGACGGATCGTACTGCAAGGT
CCTCACCAACAAAGGTCCGATCTCAGCGTTCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_41:1331468..1332251-

>Gvermi3393.t1 ID=Gvermi3393.t1|Name=Gvermi3393.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=630bp|location=Sequence derived from alignment at ScGOVlb_41:1331468..1332251- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGGCGACGTCCGGCGCGCTGTTATCGCTACTGCAAAAACAAGCCGTA
TCCGAAATCCCGCTACTGCCGCGGTGTTCCGGACCCCAAGATCCGCATCT
TCGACCTGGGGCGTAAAAGGGCCGGCGTCGACGAATTTCCATTCGCAGCC
CATCTGGTCTCCGATGAGAAGGAACAGCTTTCCTCCGAAGCCCTCGAAGC
TGCACGCGTGGCCTGCAACAAGTACATGACGAAGTCATGCGGAAAGGAAG
CCTTCCATCTCCGAGTGCGCGCGCATCCGTTCCATGTGTTGCGTATCAAC
AAGATGCTTTCGTGTGCCGGCGCTGATCGCCTGCAGACCGGTATGCGTGG
CGCTTTTGGAAAGCCGCTCGGCACCGTCGCCCGTGTCAAGATTGGTCAAA
CGCTTCTGTCGTTGAGAACGAAGGAAAATAACAAGGCCCATGCTCTGGAG
GCGTTGCGTCGAGCAAAGTACAAGTTCCCGGGTAGGCAGAAACTCTACAT
TTCTAGCAAGTGGGGTTTCACCAGGTTTTCGAAGGAAGAGTATTTGGAGC
TCAAGGAGCAAGGTCGAATTATTGCAGACGGATCGTACTGCAAGGTCCTC
ACCAACAAAGGTCCGATCTCAGCGTTCTAG
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