Gvermi3384.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3384.t1
Unique NameGvermi3384.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length168
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:1306076..1306579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3384Gvermi3384Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 1306076..1306579 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3384.t1.start1Gvermi3384.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 1306076..1306078 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3384.t1.CDS1Gvermi3384.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 1306076..1306579 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3384.t1.exon1Gvermi3384.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 1306076..1306579 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3384.t1.stop1Gvermi3384.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 1306577..1306579 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3384.t1Gvermi3384.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 1306076..1306579 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3384.t1 ID=Gvermi3384.t1|Name=Gvermi3384.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=168bp
MGLTWSKKNDGSDAPTPEWTSIDSKPVDKLYEPIAISMRLPSKTISKVRS
QRKTYSWNVDFEVDVACLQRRFELCSIPTTFSDDIERILVTPDMMRGMVK
DNEVSIDEMCNICAIHMVLRGDEDREMSVCLVVDISRNGHSEIEDMADLT
RRIYGYTNQEPQKQVMR*
back to top

spliced messenger RNA

>Gvermi3384.t1 ID=Gvermi3384.t1|Name=Gvermi3384.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=504bp|location=Sequence derived from alignment at ScGOVlb_41:1306076..1306579+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCTGACGTGGAGTAAAAAAAACGATGGGAGTGATGCCCCCACGCC
AGAGTGGACTTCAATAGATTCCAAGCCTGTAGATAAGCTATATGAACCAA
TCGCGATTTCAATGAGATTGCCGTCAAAGACGATCTCGAAGGTAAGATCG
CAAAGAAAAACATATTCGTGGAACGTCGATTTTGAAGTGGATGTGGCATG
CCTCCAGCGCCGATTTGAACTGTGCTCCATCCCAACAACTTTTTCGGATG
ACATAGAAAGAATACTTGTTACTCCAGACATGATGCGTGGCATGGTTAAA
GACAATGAAGTGAGCATTGATGAAATGTGTAATATATGCGCTATTCACAT
GGTATTGCGCGGTGACGAAGATAGGGAAATGAGTGTCTGTCTGGTTGTTG
ACATTTCTCGCAATGGGCATTCTGAAATTGAAGATATGGCAGACTTGACA
AGGCGTATTTACGGGTACACAAATCAAGAACCTCAGAAGCAAGTAATGCG
CTGA
back to top

protein sequence of Gvermi3384.t1

>Gvermi3384.t1 ID=Gvermi3384.t1|Name=Gvermi3384.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=168bp
MGLTWSKKNDGSDAPTPEWTSIDSKPVDKLYEPIAISMRLPSKTISKVRS
QRKTYSWNVDFEVDVACLQRRFELCSIPTTFSDDIERILVTPDMMRGMVK
DNEVSIDEMCNICAIHMVLRGDEDREMSVCLVVDISRNGHSEIEDMADLT
RRIYGYTNQEPQKQVMR*
back to top

mRNA from alignment at ScGOVlb_41:1306076..1306579+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3384.t1 ID=Gvermi3384.t1|Name=Gvermi3384.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=504bp|location=Sequence derived from alignment at ScGOVlb_41:1306076..1306579+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGGCTGACGTGGAGTAAAAAAAACGATGGGAGTGATGCCCCCACGCC
AGAGTGGACTTCAATAGATTCCAAGCCTGTAGATAAGCTATATGAACCAA
TCGCGATTTCAATGAGATTGCCGTCAAAGACGATCTCGAAGGTAAGATCG
CAAAGAAAAACATATTCGTGGAACGTCGATTTTGAAGTGGATGTGGCATG
CCTCCAGCGCCGATTTGAACTGTGCTCCATCCCAACAACTTTTTCGGATG
ACATAGAAAGAATACTTGTTACTCCAGACATGATGCGTGGCATGGTTAAA
GACAATGAAGTGAGCATTGATGAAATGTGTAATATATGCGCTATTCACAT
GGTATTGCGCGGTGACGAAGATAGGGAAATGAGTGTCTGTCTGGTTGTTG
ACATTTCTCGCAATGGGCATTCTGAAATTGAAGATATGGCAGACTTGACA
AGGCGTATTTACGGGTACACAAATCAAGAACCTCAGAAGCAAGTAATGCG
CTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_41:1306076..1306579+

>Gvermi3384.t1 ID=Gvermi3384.t1|Name=Gvermi3384.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=504bp|location=Sequence derived from alignment at ScGOVlb_41:1306076..1306579+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGGCTGACGTGGAGTAAAAAAAACGATGGGAGTGATGCCCCCACGCC
AGAGTGGACTTCAATAGATTCCAAGCCTGTAGATAAGCTATATGAACCAA
TCGCGATTTCAATGAGATTGCCGTCAAAGACGATCTCGAAGGTAAGATCG
CAAAGAAAAACATATTCGTGGAACGTCGATTTTGAAGTGGATGTGGCATG
CCTCCAGCGCCGATTTGAACTGTGCTCCATCCCAACAACTTTTTCGGATG
ACATAGAAAGAATACTTGTTACTCCAGACATGATGCGTGGCATGGTTAAA
GACAATGAAGTGAGCATTGATGAAATGTGTAATATATGCGCTATTCACAT
GGTATTGCGCGGTGACGAAGATAGGGAAATGAGTGTCTGTCTGGTTGTTG
ACATTTCTCGCAATGGGCATTCTGAAATTGAAGATATGGCAGACTTGACA
AGGCGTATTTACGGGTACACAAATCAAGAACCTCAGAAGCAAGTAATGCG
CTGA
back to top