Gvermi3350.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3350.t1
Unique NameGvermi3350.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length336
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:1194031..1195038 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3350Gvermi3350Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 1194031..1195038 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3350.t1.stop1Gvermi3350.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 1194031..1194033 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3350.t1.CDS1Gvermi3350.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 1194031..1195038 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3350.t1.exon1Gvermi3350.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 1194031..1195038 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3350.t1.start1Gvermi3350.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 1195036..1195038 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3350.t1Gvermi3350.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 1194031..1195038 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3350.t1 ID=Gvermi3350.t1|Name=Gvermi3350.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=336bp
MFHLAASLTCTSLALMKLCQFLAKFGDPDFFVSMLSSTPFHLQPSVNTML
ALSAFIIISIFTIALVSSFIPVRPNSPNYCPASVTAPDDINTFYYFPTTI
KATSKPVVNSTAHQVLSPPSVDQASQMHNSSPSTLKESFSLVTFTFGTDR
PEVYLKMCEPKKRKIICHCPCNHKSPELQSIPHINNITSSCTPTTPSSGS
NSTFEVDSEELNPFEFTTANAGSTPAPSYHAVDMAYLPDIQSLEQVVCDP
GIEPEVCDTSYPPLLEVCVENPPPLRRVTTQMSIIPNDQIVMAEELKKVI
VSQFKMFELVVAFAAFMRTLVGHAANQTNVRRVPN*
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spliced messenger RNA

>Gvermi3350.t1 ID=Gvermi3350.t1|Name=Gvermi3350.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1008bp|location=Sequence derived from alignment at ScGOVlb_41:1194031..1195038- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCATCTCGCTGCCTCCCTCACGTGCACCTCGCTGGCGCTCATGAA
GCTCTGCCAATTCTTGGCCAAGTTCGGAGACCCCGATTTTTTCGTCTCCA
TGCTATCCTCGACCCCATTCCACCTGCAACCCTCTGTTAATACTATGCTT
GCTTTATCCGCCTTCATCATCATTTCAATCTTCACCATAGCCCTGGTTTC
GTCGTTCATCCCTGTTCGGCCCAATTCCCCCAATTATTGCCCCGCCTCCG
TCACAGCTCCCGACGATATTAATACTTTCTACTACTTCCCCACCACCATC
AAAGCCACATCCAAACCCGTCGTCAACTCCACCGCCCATCAAGTCTTATC
ACCGCCCTCAGTGGACCAAGCCTCTCAAATGCATAACTCATCCCCTTCCA
CCCTCAAAGAGTCCTTCAGCCTCGTCACTTTCACCTTTGGAACCGACCGC
CCAGAAGTGTACCTCAAAATGTGCGAACCGAAGAAGCGGAAAATTATCTG
TCACTGTCCATGCAATCACAAGAGCCCTGAACTCCAAAGTATTCCGCACA
TCAACAATATAACGTCTTCTTGCACCCCTACTACTCCATCATCCGGATCG
AATTCTACCTTCGAGGTCGATTCCGAAGAGCTCAACCCATTCGAGTTCAC
TACGGCCAATGCGGGAAGTACCCCAGCCCCGAGCTATCATGCCGTTGACA
TGGCCTACTTGCCCGACATACAGTCGCTGGAACAAGTTGTGTGCGATCCA
GGTATTGAGCCCGAGGTTTGCGATACTTCATACCCACCGCTGCTTGAAGT
TTGCGTTGAAAACCCTCCCCCCCTCCGTCGCGTAACCACCCAAATGTCCA
TCATTCCGAACGATCAAATTGTCATGGCTGAAGAGCTCAAGAAAGTCATC
GTGAGCCAGTTCAAAATGTTTGAGCTTGTTGTTGCCTTCGCCGCCTTCAT
GAGAACTTTGGTTGGTCACGCTGCCAACCAAACTAACGTGCGCCGAGTGC
CTAATTAG
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protein sequence of Gvermi3350.t1

>Gvermi3350.t1 ID=Gvermi3350.t1|Name=Gvermi3350.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=336bp
MFHLAASLTCTSLALMKLCQFLAKFGDPDFFVSMLSSTPFHLQPSVNTML
ALSAFIIISIFTIALVSSFIPVRPNSPNYCPASVTAPDDINTFYYFPTTI
KATSKPVVNSTAHQVLSPPSVDQASQMHNSSPSTLKESFSLVTFTFGTDR
PEVYLKMCEPKKRKIICHCPCNHKSPELQSIPHINNITSSCTPTTPSSGS
NSTFEVDSEELNPFEFTTANAGSTPAPSYHAVDMAYLPDIQSLEQVVCDP
GIEPEVCDTSYPPLLEVCVENPPPLRRVTTQMSIIPNDQIVMAEELKKVI
VSQFKMFELVVAFAAFMRTLVGHAANQTNVRRVPN*
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mRNA from alignment at ScGOVlb_41:1194031..1195038-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3350.t1 ID=Gvermi3350.t1|Name=Gvermi3350.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1008bp|location=Sequence derived from alignment at ScGOVlb_41:1194031..1195038- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCCATCTCGCTGCCTCCCTCACGTGCACCTCGCTGGCGCTCATGAA
GCTCTGCCAATTCTTGGCCAAGTTCGGAGACCCCGATTTTTTCGTCTCCA
TGCTATCCTCGACCCCATTCCACCTGCAACCCTCTGTTAATACTATGCTT
GCTTTATCCGCCTTCATCATCATTTCAATCTTCACCATAGCCCTGGTTTC
GTCGTTCATCCCTGTTCGGCCCAATTCCCCCAATTATTGCCCCGCCTCCG
TCACAGCTCCCGACGATATTAATACTTTCTACTACTTCCCCACCACCATC
AAAGCCACATCCAAACCCGTCGTCAACTCCACCGCCCATCAAGTCTTATC
ACCGCCCTCAGTGGACCAAGCCTCTCAAATGCATAACTCATCCCCTTCCA
CCCTCAAAGAGTCCTTCAGCCTCGTCACTTTCACCTTTGGAACCGACCGC
CCAGAAGTGTACCTCAAAATGTGCGAACCGAAGAAGCGGAAAATTATCTG
TCACTGTCCATGCAATCACAAGAGCCCTGAACTCCAAAGTATTCCGCACA
TCAACAATATAACGTCTTCTTGCACCCCTACTACTCCATCATCCGGATCG
AATTCTACCTTCGAGGTCGATTCCGAAGAGCTCAACCCATTCGAGTTCAC
TACGGCCAATGCGGGAAGTACCCCAGCCCCGAGCTATCATGCCGTTGACA
TGGCCTACTTGCCCGACATACAGTCGCTGGAACAAGTTGTGTGCGATCCA
GGTATTGAGCCCGAGGTTTGCGATACTTCATACCCACCGCTGCTTGAAGT
TTGCGTTGAAAACCCTCCCCCCCTCCGTCGCGTAACCACCCAAATGTCCA
TCATTCCGAACGATCAAATTGTCATGGCTGAAGAGCTCAAGAAAGTCATC
GTGAGCCAGTTCAAAATGTTTGAGCTTGTTGTTGCCTTCGCCGCCTTCAT
GAGAACTTTGGTTGGTCACGCTGCCAACCAAACTAACGTGCGCCGAGTGC
CTAATTAG
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Coding sequence (CDS) from alignment at ScGOVlb_41:1194031..1195038-

>Gvermi3350.t1 ID=Gvermi3350.t1|Name=Gvermi3350.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1008bp|location=Sequence derived from alignment at ScGOVlb_41:1194031..1195038- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCCATCTCGCTGCCTCCCTCACGTGCACCTCGCTGGCGCTCATGAA
GCTCTGCCAATTCTTGGCCAAGTTCGGAGACCCCGATTTTTTCGTCTCCA
TGCTATCCTCGACCCCATTCCACCTGCAACCCTCTGTTAATACTATGCTT
GCTTTATCCGCCTTCATCATCATTTCAATCTTCACCATAGCCCTGGTTTC
GTCGTTCATCCCTGTTCGGCCCAATTCCCCCAATTATTGCCCCGCCTCCG
TCACAGCTCCCGACGATATTAATACTTTCTACTACTTCCCCACCACCATC
AAAGCCACATCCAAACCCGTCGTCAACTCCACCGCCCATCAAGTCTTATC
ACCGCCCTCAGTGGACCAAGCCTCTCAAATGCATAACTCATCCCCTTCCA
CCCTCAAAGAGTCCTTCAGCCTCGTCACTTTCACCTTTGGAACCGACCGC
CCAGAAGTGTACCTCAAAATGTGCGAACCGAAGAAGCGGAAAATTATCTG
TCACTGTCCATGCAATCACAAGAGCCCTGAACTCCAAAGTATTCCGCACA
TCAACAATATAACGTCTTCTTGCACCCCTACTACTCCATCATCCGGATCG
AATTCTACCTTCGAGGTCGATTCCGAAGAGCTCAACCCATTCGAGTTCAC
TACGGCCAATGCGGGAAGTACCCCAGCCCCGAGCTATCATGCCGTTGACA
TGGCCTACTTGCCCGACATACAGTCGCTGGAACAAGTTGTGTGCGATCCA
GGTATTGAGCCCGAGGTTTGCGATACTTCATACCCACCGCTGCTTGAAGT
TTGCGTTGAAAACCCTCCCCCCCTCCGTCGCGTAACCACCCAAATGTCCA
TCATTCCGAACGATCAAATTGTCATGGCTGAAGAGCTCAAGAAAGTCATC
GTGAGCCAGTTCAAAATGTTTGAGCTTGTTGTTGCCTTCGCCGCCTTCAT
GAGAACTTTGGTTGGTCACGCTGCCAACCAAACTAACGTGCGCCGAGTGC
CTAATTAG
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