Gvermi3342.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3342.t1
Unique NameGvermi3342.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length179
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:1173068..1173604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38833.XP_003055126.1
PFAMsThioredoxin
Max annot lvl3041|Chlorophyta
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
Evalue1.61e-14
EggNOG OGsCOG0526@1|root,KOG0907@2759|Eukaryota,37RSI@33090|Viridiplantae,34M08@3041|Chlorophyta
DescriptionThioredoxin
COG categoryO
BRITEko00000,ko00001,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3342Gvermi3342Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 1173068..1173604 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3342.t1.stop1Gvermi3342.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 1173068..1173070 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3342.t1.CDS1Gvermi3342.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 1173068..1173604 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3342.t1.exon1Gvermi3342.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 1173068..1173604 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3342.t1.start1Gvermi3342.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 1173602..1173604 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3342.t1Gvermi3342.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 1173068..1173604 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3342.t1 ID=Gvermi3342.t1|Name=Gvermi3342.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=179bp
MLSALAAFTTPTPLRIAPTVPSRPSTCRRRPVLVSIATPPPPLQPSDKSS
PHDHPSPAQPLVGTETLQRALLTAPPEKLVVVMFHARWCRVCKTLSAKLF
RVAEQFPHVVWLSVDFAELPNKPLCAQLGVKLLPTFRFYKPQANIEQAVD
HFTTGPFGVNRLVEHLEKQSPSDVLENS*
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spliced messenger RNA

>Gvermi3342.t1 ID=Gvermi3342.t1|Name=Gvermi3342.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=537bp|location=Sequence derived from alignment at ScGOVlb_41:1173068..1173604- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTATCCGCCTTAGCAGCCTTCACAACTCCTACTCCGCTCCGCATTGC
CCCCACCGTTCCATCCCGGCCGTCTACGTGTCGGCGCCGACCTGTGCTGG
TTTCCATAGCCACCCCGCCTCCACCGCTTCAACCCTCTGATAAGAGCTCG
CCGCATGATCACCCTTCCCCGGCTCAGCCTCTTGTAGGAACCGAGACTCT
GCAACGTGCCCTTCTCACAGCCCCTCCGGAAAAGCTTGTGGTGGTCATGT
TCCACGCGCGCTGGTGCCGTGTTTGCAAAACACTCTCGGCAAAACTTTTC
CGTGTCGCCGAACAGTTTCCACATGTTGTCTGGCTCTCAGTCGACTTCGC
CGAACTTCCTAACAAGCCCCTGTGCGCACAGCTCGGAGTCAAGCTGCTGC
CTACCTTCAGATTTTACAAGCCGCAAGCAAACATCGAACAAGCGGTGGAC
CACTTTACCACCGGGCCGTTCGGTGTCAACCGATTAGTGGAGCATTTGGA
AAAACAAAGCCCATCAGACGTCTTGGAGAACTCTTGA
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protein sequence of Gvermi3342.t1

>Gvermi3342.t1 ID=Gvermi3342.t1|Name=Gvermi3342.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=179bp
MLSALAAFTTPTPLRIAPTVPSRPSTCRRRPVLVSIATPPPPLQPSDKSS
PHDHPSPAQPLVGTETLQRALLTAPPEKLVVVMFHARWCRVCKTLSAKLF
RVAEQFPHVVWLSVDFAELPNKPLCAQLGVKLLPTFRFYKPQANIEQAVD
HFTTGPFGVNRLVEHLEKQSPSDVLENS*
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mRNA from alignment at ScGOVlb_41:1173068..1173604-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3342.t1 ID=Gvermi3342.t1|Name=Gvermi3342.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=537bp|location=Sequence derived from alignment at ScGOVlb_41:1173068..1173604- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTATCCGCCTTAGCAGCCTTCACAACTCCTACTCCGCTCCGCATTGC
CCCCACCGTTCCATCCCGGCCGTCTACGTGTCGGCGCCGACCTGTGCTGG
TTTCCATAGCCACCCCGCCTCCACCGCTTCAACCCTCTGATAAGAGCTCG
CCGCATGATCACCCTTCCCCGGCTCAGCCTCTTGTAGGAACCGAGACTCT
GCAACGTGCCCTTCTCACAGCCCCTCCGGAAAAGCTTGTGGTGGTCATGT
TCCACGCGCGCTGGTGCCGTGTTTGCAAAACACTCTCGGCAAAACTTTTC
CGTGTCGCCGAACAGTTTCCACATGTTGTCTGGCTCTCAGTCGACTTCGC
CGAACTTCCTAACAAGCCCCTGTGCGCACAGCTCGGAGTCAAGCTGCTGC
CTACCTTCAGATTTTACAAGCCGCAAGCAAACATCGAACAAGCGGTGGAC
CACTTTACCACCGGGCCGTTCGGTGTCAACCGATTAGTGGAGCATTTGGA
AAAACAAAGCCCATCAGACGTCTTGGAGAACTCTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_41:1173068..1173604-

>Gvermi3342.t1 ID=Gvermi3342.t1|Name=Gvermi3342.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=537bp|location=Sequence derived from alignment at ScGOVlb_41:1173068..1173604- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTATCCGCCTTAGCAGCCTTCACAACTCCTACTCCGCTCCGCATTGC
CCCCACCGTTCCATCCCGGCCGTCTACGTGTCGGCGCCGACCTGTGCTGG
TTTCCATAGCCACCCCGCCTCCACCGCTTCAACCCTCTGATAAGAGCTCG
CCGCATGATCACCCTTCCCCGGCTCAGCCTCTTGTAGGAACCGAGACTCT
GCAACGTGCCCTTCTCACAGCCCCTCCGGAAAAGCTTGTGGTGGTCATGT
TCCACGCGCGCTGGTGCCGTGTTTGCAAAACACTCTCGGCAAAACTTTTC
CGTGTCGCCGAACAGTTTCCACATGTTGTCTGGCTCTCAGTCGACTTCGC
CGAACTTCCTAACAAGCCCCTGTGCGCACAGCTCGGAGTCAAGCTGCTGC
CTACCTTCAGATTTTACAAGCCGCAAGCAAACATCGAACAAGCGGTGGAC
CACTTTACCACCGGGCCGTTCGGTGTCAACCGATTAGTGGAGCATTTGGA
AAAACAAAGCCCATCAGACGTCTTGGAGAACTCTTGA
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