Gvermi3323.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi3323.t1
Unique Name	Gvermi3323.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	565

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_41	contig	ScGOVlb_41:1074198..1075892 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703804.1
Preferred name	GNL2
PFAMs	MMR_HSR1,NGP1NT
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14537,ko:K16474
KEGG Pathway	ko03008,map03008
GOs	GO:0000054,GO:0000055,GO:0000166,GO:0001654,GO:0001745,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006403,GO:0006405,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0007275,GO:0007423,GO:0008104,GO:0008150,GO:0009653,GO:0009887,GO:0015031,GO:0015833,GO:0015931,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022613,GO:0030684,GO:0030687,GO:0031503,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033750,GO:0034613,GO:0035639,GO:0036094,GO:0042254,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048513,GO:0048592,GO:0048731,GO:0048749,GO:0048856,GO:0050657,GO:0050658,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071705,GO:0071840,GO:0090596,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1990904
Evalue	2.41e-168
EggNOG OGs	COG1161@1\|root,KOG2423@2759\|Eukaryota
Description	GTP binding
COG category	K
BRITE	ko00000,ko00001,ko03009,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi3323	Gvermi3323	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_41 1074198..1075892 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3323.t1.start1	Gvermi3323.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_41 1074198..1074200 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3323.t1.CDS1	Gvermi3323.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_41 1074198..1075892 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3323.t1.exon1	Gvermi3323.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_41 1074198..1075892 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3323.t1.stop1	Gvermi3323.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_41 1075890..1075892 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3323.t1	Gvermi3323.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_41 1074198..1075892 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_41:1074198..1075892+
coding sequence from alignment at ScGOVlb_41:1074198..1075892+

mRNA sequence

>Gvermi3323.t1 ID=Gvermi3323.t1|Name=Gvermi3323.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=565bp
MPKVKPKLAAGVGGNQPRHAMDANRGNHKIGHGRDRATVKRIQMYKTKAH
KRDRNGRIIKDAGDLTSTTPEVGAGRVAPNRKWFGNTRVVQQKDLTRFRE
AMAKAQADPFSVLLKQKKLPMALVDEPQSESRALAGSQMGLLVNEPFDQT
FSKKRKRKRPKLAASSYAQLLSKAEQSNKEYEDDLERKEQYAEEMARKAA
ADAPPDPDAKAGLRFDDLKNAQRERVFNKGQSKRIWSELHKVVDSSDVVI
QVLDARDPTGTRCTYLEKFLKRQCSHKHMILLLNKADLVPTWVSSAWLKI
LSLEYPTLVFHSSITNPFGKGSLINLLRQFKALHPEKKSISCGLVGYPNV
GKSSVINTLRGKKVSKVAPIPGETKVWQYVTMFRSIFLIDCPGVVHDSTN
NSQAEAVLKGVVRIESLRGMAAEYIPALLERAREKYIRRTYGIDSWERPD
DLLEKLARKTGKLLKGGEPDVNTVGRMMLCDFQRGKLPWFIPPPGHAHEE
IKEKDQAHYPSEEKPNNDDVVEKNVNACSTSDGDIAHNGLEDVSGVTIEH
EDIKKLKVSKRVVD*

spliced messenger RNA

>Gvermi3323.t1 ID=Gvermi3323.t1|Name=Gvermi3323.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1695bp|location=Sequence derived from alignment at ScGOVlb_41:1074198..1075892+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTAAGGTAAAACCAAAGCTCGCCGCTGGCGTTGGGGGCAATCAACC
ACGTCATGCAATGGATGCCAATCGCGGAAACCATAAAATAGGTCACGGAA
GGGACAGAGCGACTGTGAAAAGAATTCAGATGTACAAAACAAAAGCACAC
AAACGAGATCGGAATGGAAGAATAATAAAAGACGCTGGTGATTTGACAAG
CACTACCCCGGAGGTCGGTGCAGGTCGTGTCGCTCCGAACAGAAAATGGT
TTGGAAATACTCGCGTCGTGCAGCAGAAAGATTTAACTAGATTCCGAGAG
GCCATGGCCAAAGCACAAGCGGACCCGTTTTCTGTACTTCTTAAACAAAA
GAAGCTACCCATGGCACTTGTAGATGAACCACAGAGCGAGAGCCGAGCAC
TGGCGGGTTCCCAGATGGGACTTTTGGTGAACGAGCCTTTTGACCAGACA
TTTTCGAAGAAGAGAAAAAGAAAACGGCCGAAGCTGGCAGCGTCTTCCTA
CGCACAATTATTGAGCAAAGCTGAGCAAAGCAACAAGGAATACGAGGATG
ATCTTGAACGAAAAGAACAGTACGCGGAAGAAATGGCAAGAAAGGCTGCT
GCTGATGCGCCACCAGACCCGGACGCGAAAGCAGGACTTCGCTTCGATGA
CCTGAAAAATGCTCAGCGAGAAAGGGTGTTTAACAAAGGACAGAGCAAGA
GAATATGGTCCGAGCTACACAAGGTTGTGGATTCTAGCGATGTAGTTATT
CAAGTACTGGACGCACGTGACCCAACGGGAACGCGATGCACGTATCTTGA
GAAGTTCTTAAAACGACAATGTTCCCACAAACACATGATCTTGTTGCTCA
ACAAAGCCGATTTAGTACCTACTTGGGTCTCCTCAGCATGGCTGAAAATT
CTGAGCTTGGAATATCCCACTCTGGTCTTCCACTCGAGCATAACGAATCC
TTTTGGAAAGGGCTCGCTTATTAATCTCTTGAGGCAATTCAAAGCACTTC
ATCCGGAGAAGAAGTCGATCTCATGCGGGTTGGTCGGATACCCGAACGTG
GGCAAGTCAAGTGTTATCAATACTCTGAGGGGCAAAAAAGTATCGAAAGT
TGCACCCATTCCTGGCGAAACTAAGGTTTGGCAGTATGTGACAATGTTTC
GTTCCATATTTCTCATCGATTGTCCTGGTGTGGTACACGACTCGACCAAC
AATTCTCAGGCAGAAGCCGTCTTGAAGGGAGTCGTGCGAATTGAATCTCT
ACGTGGCATGGCTGCGGAATATATTCCTGCTCTGTTGGAAAGAGCCAGGG
AGAAGTACATTCGACGAACGTATGGAATAGATTCTTGGGAACGGCCGGAC
GATTTGCTGGAGAAACTGGCTCGTAAAACGGGTAAACTCTTGAAAGGAGG
TGAACCGGATGTCAACACCGTTGGTAGAATGATGCTCTGCGACTTTCAGA
GAGGAAAACTTCCGTGGTTTATACCACCTCCAGGCCATGCGCACGAAGAA
ATCAAGGAAAAGGATCAAGCGCATTATCCATCTGAGGAGAAGCCGAACAA
CGACGATGTTGTTGAGAAGAATGTGAATGCATGTTCGACTTCAGACGGTG
ATATAGCTCATAATGGTCTAGAGGATGTCAGTGGCGTCACCATCGAGCAT
GAAGACATAAAGAAACTCAAGGTATCTAAACGGGTAGTTGACTAA

protein sequence of Gvermi3323.t1

>Gvermi3323.t1 ID=Gvermi3323.t1|Name=Gvermi3323.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=565bp
MPKVKPKLAAGVGGNQPRHAMDANRGNHKIGHGRDRATVKRIQMYKTKAH
KRDRNGRIIKDAGDLTSTTPEVGAGRVAPNRKWFGNTRVVQQKDLTRFRE
AMAKAQADPFSVLLKQKKLPMALVDEPQSESRALAGSQMGLLVNEPFDQT
FSKKRKRKRPKLAASSYAQLLSKAEQSNKEYEDDLERKEQYAEEMARKAA
ADAPPDPDAKAGLRFDDLKNAQRERVFNKGQSKRIWSELHKVVDSSDVVI
QVLDARDPTGTRCTYLEKFLKRQCSHKHMILLLNKADLVPTWVSSAWLKI
LSLEYPTLVFHSSITNPFGKGSLINLLRQFKALHPEKKSISCGLVGYPNV
GKSSVINTLRGKKVSKVAPIPGETKVWQYVTMFRSIFLIDCPGVVHDSTN
NSQAEAVLKGVVRIESLRGMAAEYIPALLERAREKYIRRTYGIDSWERPD
DLLEKLARKTGKLLKGGEPDVNTVGRMMLCDFQRGKLPWFIPPPGHAHEE
IKEKDQAHYPSEEKPNNDDVVEKNVNACSTSDGDIAHNGLEDVSGVTIEH
EDIKKLKVSKRVVD*

mRNA from alignment at ScGOVlb_41:1074198..1075892+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi3323.t1 ID=Gvermi3323.t1|Name=Gvermi3323.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1695bp|location=Sequence derived from alignment at ScGOVlb_41:1074198..1075892+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTAAGGTAAAACCAAAGCTCGCCGCTGGCGTTGGGGGCAATCAACC
ACGTCATGCAATGGATGCCAATCGCGGAAACCATAAAATAGGTCACGGAA
GGGACAGAGCGACTGTGAAAAGAATTCAGATGTACAAAACAAAAGCACAC
AAACGAGATCGGAATGGAAGAATAATAAAAGACGCTGGTGATTTGACAAG
CACTACCCCGGAGGTCGGTGCAGGTCGTGTCGCTCCGAACAGAAAATGGT
TTGGAAATACTCGCGTCGTGCAGCAGAAAGATTTAACTAGATTCCGAGAG
GCCATGGCCAAAGCACAAGCGGACCCGTTTTCTGTACTTCTTAAACAAAA
GAAGCTACCCATGGCACTTGTAGATGAACCACAGAGCGAGAGCCGAGCAC
TGGCGGGTTCCCAGATGGGACTTTTGGTGAACGAGCCTTTTGACCAGACA
TTTTCGAAGAAGAGAAAAAGAAAACGGCCGAAGCTGGCAGCGTCTTCCTA
CGCACAATTATTGAGCAAAGCTGAGCAAAGCAACAAGGAATACGAGGATG
ATCTTGAACGAAAAGAACAGTACGCGGAAGAAATGGCAAGAAAGGCTGCT
GCTGATGCGCCACCAGACCCGGACGCGAAAGCAGGACTTCGCTTCGATGA
CCTGAAAAATGCTCAGCGAGAAAGGGTGTTTAACAAAGGACAGAGCAAGA
GAATATGGTCCGAGCTACACAAGGTTGTGGATTCTAGCGATGTAGTTATT
CAAGTACTGGACGCACGTGACCCAACGGGAACGCGATGCACGTATCTTGA
GAAGTTCTTAAAACGACAATGTTCCCACAAACACATGATCTTGTTGCTCA
ACAAAGCCGATTTAGTACCTACTTGGGTCTCCTCAGCATGGCTGAAAATT
CTGAGCTTGGAATATCCCACTCTGGTCTTCCACTCGAGCATAACGAATCC
TTTTGGAAAGGGCTCGCTTATTAATCTCTTGAGGCAATTCAAAGCACTTC
ATCCGGAGAAGAAGTCGATCTCATGCGGGTTGGTCGGATACCCGAACGTG
GGCAAGTCAAGTGTTATCAATACTCTGAGGGGCAAAAAAGTATCGAAAGT
TGCACCCATTCCTGGCGAAACTAAGGTTTGGCAGTATGTGACAATGTTTC
GTTCCATATTTCTCATCGATTGTCCTGGTGTGGTACACGACTCGACCAAC
AATTCTCAGGCAGAAGCCGTCTTGAAGGGAGTCGTGCGAATTGAATCTCT
ACGTGGCATGGCTGCGGAATATATTCCTGCTCTGTTGGAAAGAGCCAGGG
AGAAGTACATTCGACGAACGTATGGAATAGATTCTTGGGAACGGCCGGAC
GATTTGCTGGAGAAACTGGCTCGTAAAACGGGTAAACTCTTGAAAGGAGG
TGAACCGGATGTCAACACCGTTGGTAGAATGATGCTCTGCGACTTTCAGA
GAGGAAAACTTCCGTGGTTTATACCACCTCCAGGCCATGCGCACGAAGAA
ATCAAGGAAAAGGATCAAGCGCATTATCCATCTGAGGAGAAGCCGAACAA
CGACGATGTTGTTGAGAAGAATGTGAATGCATGTTCGACTTCAGACGGTG
ATATAGCTCATAATGGTCTAGAGGATGTCAGTGGCGTCACCATCGAGCAT
GAAGACATAAAGAAACTCAAGGTATCTAAACGGGTAGTTGACTAA

Coding sequence (CDS) from alignment at ScGOVlb_41:1074198..1075892+

>Gvermi3323.t1 ID=Gvermi3323.t1|Name=Gvermi3323.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1695bp|location=Sequence derived from alignment at ScGOVlb_41:1074198..1075892+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTAAGGTAAAACCAAAGCTCGCCGCTGGCGTTGGGGGCAATCAACC
ACGTCATGCAATGGATGCCAATCGCGGAAACCATAAAATAGGTCACGGAA
GGGACAGAGCGACTGTGAAAAGAATTCAGATGTACAAAACAAAAGCACAC
AAACGAGATCGGAATGGAAGAATAATAAAAGACGCTGGTGATTTGACAAG
CACTACCCCGGAGGTCGGTGCAGGTCGTGTCGCTCCGAACAGAAAATGGT
TTGGAAATACTCGCGTCGTGCAGCAGAAAGATTTAACTAGATTCCGAGAG
GCCATGGCCAAAGCACAAGCGGACCCGTTTTCTGTACTTCTTAAACAAAA
GAAGCTACCCATGGCACTTGTAGATGAACCACAGAGCGAGAGCCGAGCAC
TGGCGGGTTCCCAGATGGGACTTTTGGTGAACGAGCCTTTTGACCAGACA
TTTTCGAAGAAGAGAAAAAGAAAACGGCCGAAGCTGGCAGCGTCTTCCTA
CGCACAATTATTGAGCAAAGCTGAGCAAAGCAACAAGGAATACGAGGATG
ATCTTGAACGAAAAGAACAGTACGCGGAAGAAATGGCAAGAAAGGCTGCT
GCTGATGCGCCACCAGACCCGGACGCGAAAGCAGGACTTCGCTTCGATGA
CCTGAAAAATGCTCAGCGAGAAAGGGTGTTTAACAAAGGACAGAGCAAGA
GAATATGGTCCGAGCTACACAAGGTTGTGGATTCTAGCGATGTAGTTATT
CAAGTACTGGACGCACGTGACCCAACGGGAACGCGATGCACGTATCTTGA
GAAGTTCTTAAAACGACAATGTTCCCACAAACACATGATCTTGTTGCTCA
ACAAAGCCGATTTAGTACCTACTTGGGTCTCCTCAGCATGGCTGAAAATT
CTGAGCTTGGAATATCCCACTCTGGTCTTCCACTCGAGCATAACGAATCC
TTTTGGAAAGGGCTCGCTTATTAATCTCTTGAGGCAATTCAAAGCACTTC
ATCCGGAGAAGAAGTCGATCTCATGCGGGTTGGTCGGATACCCGAACGTG
GGCAAGTCAAGTGTTATCAATACTCTGAGGGGCAAAAAAGTATCGAAAGT
TGCACCCATTCCTGGCGAAACTAAGGTTTGGCAGTATGTGACAATGTTTC
GTTCCATATTTCTCATCGATTGTCCTGGTGTGGTACACGACTCGACCAAC
AATTCTCAGGCAGAAGCCGTCTTGAAGGGAGTCGTGCGAATTGAATCTCT
ACGTGGCATGGCTGCGGAATATATTCCTGCTCTGTTGGAAAGAGCCAGGG
AGAAGTACATTCGACGAACGTATGGAATAGATTCTTGGGAACGGCCGGAC
GATTTGCTGGAGAAACTGGCTCGTAAAACGGGTAAACTCTTGAAAGGAGG
TGAACCGGATGTCAACACCGTTGGTAGAATGATGCTCTGCGACTTTCAGA
GAGGAAAACTTCCGTGGTTTATACCACCTCCAGGCCATGCGCACGAAGAA
ATCAAGGAAAAGGATCAAGCGCATTATCCATCTGAGGAGAAGCCGAACAA
CGACGATGTTGTTGAGAAGAATGTGAATGCATGTTCGACTTCAGACGGTG
ATATAGCTCATAATGGTCTAGAGGATGTCAGTGGCGTCACCATCGAGCAT
GAAGACATAAAGAAACTCAAGGTATCTAAACGGGTAGTTGACTAA