Gvermi3321.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3321.t2
Unique NameGvermi3321.t2
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length346
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:1030076..1031113 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1123256.KB907925_gene1339
PFAMsAbhydrolase_2
Max annot lvl135614|Xanthomonadales
KEGG koko:K06999
Evalue7.52e-09
EggNOG OGsCOG0400@1|root,COG0400@2|Bacteria,1RA02@1224|Proteobacteria,1S24F@1236|Gammaproteobacteria,1X4YF@135614|Xanthomonadales
DescriptionCarboxylesterase
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3321Gvermi3321Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 1030076..1031113 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3321.t2.stop1Gvermi3321.t2.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 1030076..1030078 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3321.t2.CDS1Gvermi3321.t2.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 1030076..1031113 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3321.t2.exon1Gvermi3321.t2.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 1030076..1031113 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3321.t2.start1Gvermi3321.t2.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 1031111..1031113 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3321.t2Gvermi3321.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 1030076..1031113 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3321.t2 ID=Gvermi3321.t2|Name=Gvermi3321.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=346bp
MPRLAALLLPLLFAACTSLVAAWSPLDIIREYFPCTALRLSRPPWTTTYY
EPSIIPPSELNVTQQQLLDIVARFNFTCEDTIPVTGHKLLCSPHGFSFEP
PRPARYAIVVLHGIVGPGNEASLIPVLARILATDPGFTSRIRIEFPLYHF
RRITFATFISPPRPVARAYFDLLPPPRSLALEDVIAAENDRLGLYRASQF
VEFTVRSQICKASIPISRVAVLGHSLGGFTTLEAVMSTGLDLAGAVVISG
SLPRAGDYIQPDFPAYDTTRRRFNITMIHGTADDVVPFVFANLSAQILKP
VFTSLGGSLNLEPIEGLDHFTELFRDPQVFAITLRALRQAFIRSS*
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spliced messenger RNA

>Gvermi3321.t2 ID=Gvermi3321.t2|Name=Gvermi3321.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1038bp|location=Sequence derived from alignment at ScGOVlb_41:1030076..1031113- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACGTCTCGCCGCCCTCCTTCTACCGCTGCTTTTCGCGGCATGCAC
TTCCCTCGTTGCGGCCTGGAGCCCGTTAGACATCATCAGGGAGTATTTCC
CGTGCACTGCGCTTCGTCTTTCCCGTCCGCCGTGGACTACAACGTACTAC
GAACCATCTATAATCCCCCCGTCTGAACTAAATGTTACCCAGCAGCAGCT
CCTCGACATTGTTGCCAGATTCAACTTCACGTGCGAGGACACCATTCCTG
TCACTGGGCACAAGCTTCTTTGCTCTCCACACGGTTTCTCGTTTGAGCCC
CCACGCCCAGCGCGTTACGCAATTGTGGTTCTGCATGGGATAGTGGGGCC
TGGCAATGAGGCTTCGCTCATTCCAGTTTTAGCTCGCATACTGGCTACTG
ATCCTGGTTTCACTTCCCGAATCCGTATTGAATTTCCCTTGTACCATTTC
CGTCGCATCACGTTCGCGACATTCATATCGCCACCCAGACCAGTGGCTCG
TGCCTATTTTGATCTTCTTCCTCCGCCAAGGTCCCTCGCCTTAGAGGATG
TGATTGCAGCTGAAAACGATCGACTGGGTCTCTACCGCGCGTCGCAGTTT
GTCGAATTCACCGTGCGCTCGCAGATATGCAAGGCTTCCATACCAATTTC
ACGTGTTGCGGTTTTGGGACACTCTCTTGGGGGCTTCACAACGTTGGAGG
CTGTCATGTCCACTGGACTGGATTTGGCGGGCGCCGTTGTCATCTCAGGC
AGCTTACCGAGGGCTGGTGATTATATTCAGCCCGACTTTCCAGCGTACGA
TACAACGCGCAGACGTTTCAATATAACCATGATTCACGGAACAGCTGATG
ACGTCGTTCCGTTTGTGTTCGCGAACCTGTCCGCCCAGATTTTAAAACCA
GTGTTTACCTCTCTTGGAGGTAGCCTTAACTTGGAACCTATTGAAGGATT
GGATCACTTTACGGAGTTGTTCCGTGATCCTCAGGTCTTCGCCATCACAC
TGAGAGCTCTGCGACAGGCCTTTATTCGATCCTCGTGA
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protein sequence of Gvermi3321.t2

>Gvermi3321.t2 ID=Gvermi3321.t2|Name=Gvermi3321.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=346bp
MPRLAALLLPLLFAACTSLVAAWSPLDIIREYFPCTALRLSRPPWTTTYY
EPSIIPPSELNVTQQQLLDIVARFNFTCEDTIPVTGHKLLCSPHGFSFEP
PRPARYAIVVLHGIVGPGNEASLIPVLARILATDPGFTSRIRIEFPLYHF
RRITFATFISPPRPVARAYFDLLPPPRSLALEDVIAAENDRLGLYRASQF
VEFTVRSQICKASIPISRVAVLGHSLGGFTTLEAVMSTGLDLAGAVVISG
SLPRAGDYIQPDFPAYDTTRRRFNITMIHGTADDVVPFVFANLSAQILKP
VFTSLGGSLNLEPIEGLDHFTELFRDPQVFAITLRALRQAFIRSS*
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mRNA from alignment at ScGOVlb_41:1030076..1031113-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3321.t2 ID=Gvermi3321.t2|Name=Gvermi3321.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1038bp|location=Sequence derived from alignment at ScGOVlb_41:1030076..1031113- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCACGTCTCGCCGCCCTCCTTCTACCGCTGCTTTTCGCGGCATGCAC
TTCCCTCGTTGCGGCCTGGAGCCCGTTAGACATCATCAGGGAGTATTTCC
CGTGCACTGCGCTTCGTCTTTCCCGTCCGCCGTGGACTACAACGTACTAC
GAACCATCTATAATCCCCCCGTCTGAACTAAATGTTACCCAGCAGCAGCT
CCTCGACATTGTTGCCAGATTCAACTTCACGTGCGAGGACACCATTCCTG
TCACTGGGCACAAGCTTCTTTGCTCTCCACACGGTTTCTCGTTTGAGCCC
CCACGCCCAGCGCGTTACGCAATTGTGGTTCTGCATGGGATAGTGGGGCC
TGGCAATGAGGCTTCGCTCATTCCAGTTTTAGCTCGCATACTGGCTACTG
ATCCTGGTTTCACTTCCCGAATCCGTATTGAATTTCCCTTGTACCATTTC
CGTCGCATCACGTTCGCGACATTCATATCGCCACCCAGACCAGTGGCTCG
TGCCTATTTTGATCTTCTTCCTCCGCCAAGGTCCCTCGCCTTAGAGGATG
TGATTGCAGCTGAAAACGATCGACTGGGTCTCTACCGCGCGTCGCAGTTT
GTCGAATTCACCGTGCGCTCGCAGATATGCAAGGCTTCCATACCAATTTC
ACGTGTTGCGGTTTTGGGACACTCTCTTGGGGGCTTCACAACGTTGGAGG
CTGTCATGTCCACTGGACTGGATTTGGCGGGCGCCGTTGTCATCTCAGGC
AGCTTACCGAGGGCTGGTGATTATATTCAGCCCGACTTTCCAGCGTACGA
TACAACGCGCAGACGTTTCAATATAACCATGATTCACGGAACAGCTGATG
ACGTCGTTCCGTTTGTGTTCGCGAACCTGTCCGCCCAGATTTTAAAACCA
GTGTTTACCTCTCTTGGAGGTAGCCTTAACTTGGAACCTATTGAAGGATT
GGATCACTTTACGGAGTTGTTCCGTGATCCTCAGGTCTTCGCCATCACAC
TGAGAGCTCTGCGACAGGCCTTTATTCGATCCTCGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_41:1030076..1031113-

>Gvermi3321.t2 ID=Gvermi3321.t2|Name=Gvermi3321.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1038bp|location=Sequence derived from alignment at ScGOVlb_41:1030076..1031113- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCACGTCTCGCCGCCCTCCTTCTACCGCTGCTTTTCGCGGCATGCAC
TTCCCTCGTTGCGGCCTGGAGCCCGTTAGACATCATCAGGGAGTATTTCC
CGTGCACTGCGCTTCGTCTTTCCCGTCCGCCGTGGACTACAACGTACTAC
GAACCATCTATAATCCCCCCGTCTGAACTAAATGTTACCCAGCAGCAGCT
CCTCGACATTGTTGCCAGATTCAACTTCACGTGCGAGGACACCATTCCTG
TCACTGGGCACAAGCTTCTTTGCTCTCCACACGGTTTCTCGTTTGAGCCC
CCACGCCCAGCGCGTTACGCAATTGTGGTTCTGCATGGGATAGTGGGGCC
TGGCAATGAGGCTTCGCTCATTCCAGTTTTAGCTCGCATACTGGCTACTG
ATCCTGGTTTCACTTCCCGAATCCGTATTGAATTTCCCTTGTACCATTTC
CGTCGCATCACGTTCGCGACATTCATATCGCCACCCAGACCAGTGGCTCG
TGCCTATTTTGATCTTCTTCCTCCGCCAAGGTCCCTCGCCTTAGAGGATG
TGATTGCAGCTGAAAACGATCGACTGGGTCTCTACCGCGCGTCGCAGTTT
GTCGAATTCACCGTGCGCTCGCAGATATGCAAGGCTTCCATACCAATTTC
ACGTGTTGCGGTTTTGGGACACTCTCTTGGGGGCTTCACAACGTTGGAGG
CTGTCATGTCCACTGGACTGGATTTGGCGGGCGCCGTTGTCATCTCAGGC
AGCTTACCGAGGGCTGGTGATTATATTCAGCCCGACTTTCCAGCGTACGA
TACAACGCGCAGACGTTTCAATATAACCATGATTCACGGAACAGCTGATG
ACGTCGTTCCGTTTGTGTTCGCGAACCTGTCCGCCCAGATTTTAAAACCA
GTGTTTACCTCTCTTGGAGGTAGCCTTAACTTGGAACCTATTGAAGGATT
GGATCACTTTACGGAGTTGTTCCGTGATCCTCAGGTCTTCGCCATCACAC
TGAGAGCTCTGCGACAGGCCTTTATTCGATCCTCGTGA
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