Gvermi3317.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3317.t1
Unique NameGvermi3317.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length494
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:1015517..1017083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_12628T0
PFAMsMFS_1
Max annot lvl2759|Eukaryota
Evalue1.47e-28
EggNOG OGs2EXAK@1|root,2SZ0C@2759|Eukaryota
DescriptionMajor Facilitator Superfamily
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3317Gvermi3317Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 1015517..1017083 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3317.t1Gvermi3317.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 1015517..1017083 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3317.t1.start1Gvermi3317.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 1015517..1015519 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3317.t1.CDS1Gvermi3317.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 1015517..1016684 +
Gvermi3317.t1.CDS2Gvermi3317.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 1016770..1017083 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3317.t1.exon1Gvermi3317.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 1015517..1016684 +
Gvermi3317.t1.exon2Gvermi3317.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 1016770..1017083 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3317.t1.intron1Gvermi3317.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 1016685..1016769 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3317.t1.stop1Gvermi3317.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 1017081..1017083 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3317.t1 ID=Gvermi3317.t1|Name=Gvermi3317.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=494bp
MAAGPPAQNVPDKTSVSPTTTQAPGRWSIVAAASAVHALHAAAVYMVPST
LLSPMRHTLNLSVAEITRPLIAYRIVQTLFLLPAGLLLDAIGPQLCLRVA
MTAAAISAPLLPLTTSLSQLIVLQMFFALTKLFGGLSAMLLIVTSAFPGD
IGIGTATSVLLSGYSFAGFLAPAVIGSLSQRLGWRQASMLISMLFAVGSV
PVTFYFLREHPSAQRRQSIPMLWKQIKSRFGSYKPLQTAPPPSLSSTCAQ
VNDQRNSQTRGSKRQLASAATANGKNKEALFPAPYVLIAICVFAFSFSMH
IMFDHLLVFLTEDFGLPFDKATLFMSALNLVALLSKLAVGPLADRFNKSV
LMAVFGAVGAFSSFLLLDFSLTAFSTTTSVIKIMAFVFFYAVGYAAVFSL
TTSVLPEFGKQKLGFRSNFNLMVLFASGSLGSYLSAATRSATGTYKWAFV
WNGLSWVFVIVSALAKYLLYDRRGSISDAASESQAISQKPTRQ*
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spliced messenger RNA

>Gvermi3317.t1 ID=Gvermi3317.t1|Name=Gvermi3317.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1482bp|location=Sequence derived from alignment at ScGOVlb_41:1015517..1017083+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCTGGTCCGCCTGCCCAAAATGTTCCAGACAAGACCTCTGTCTC
GCCGACCACAACACAGGCACCGGGAAGGTGGTCTATTGTGGCAGCTGCCT
CTGCCGTTCATGCGCTTCACGCTGCTGCGGTTTATATGGTCCCTTCCACA
TTGCTTTCTCCCATGCGGCATACTCTCAATCTCAGCGTTGCCGAAATCAC
ACGTCCGCTCATCGCGTATCGTATCGTGCAAACATTATTTCTTCTTCCCG
CGGGTTTGCTGCTTGACGCGATTGGCCCGCAGCTCTGTTTACGCGTTGCA
ATGACTGCCGCCGCTATATCGGCGCCTCTCTTGCCTCTAACCACTTCCTT
ATCTCAGCTTATCGTACTTCAAATGTTCTTTGCACTCACCAAATTGTTTG
GCGGCTTGTCGGCCATGCTACTCATAGTCACATCGGCGTTTCCGGGCGAC
ATTGGAATTGGCACGGCCACTAGTGTCTTGCTGAGCGGTTATTCCTTTGC
TGGGTTTCTCGCGCCTGCTGTTATCGGCTCCCTCTCACAAAGATTAGGCT
GGCGTCAAGCCAGTATGCTGATTTCTATGCTTTTTGCTGTAGGAAGCGTT
CCCGTCACGTTTTACTTTCTCAGAGAGCACCCCTCCGCTCAGCGCCGGCA
GTCGATTCCCATGCTTTGGAAACAAATTAAGTCGAGGTTTGGGAGTTACA
AGCCGTTGCAGACGGCCCCCCCCCCTTCATTATCCTCAACTTGTGCGCAG
GTAAACGATCAGAGGAATTCTCAAACAAGAGGGTCAAAGCGACAGTTAGC
ATCTGCGGCGACGGCGAACGGAAAAAACAAGGAAGCGCTCTTTCCAGCAC
CTTATGTTCTCATCGCGATTTGCGTGTTTGCGTTTTCGTTTTCAATGCAC
ATCATGTTCGATCATCTCCTGGTGTTTCTGACTGAGGATTTCGGTCTACC
ATTTGACAAGGCAACTTTATTCATGTCTGCGTTGAATTTAGTTGCCCTTC
TTTCAAAACTTGCCGTCGGTCCTTTGGCTGATCGGTTCAATAAGTCGGTT
TTGATGGCAGTCTTTGGCGCCGTTGGGGCTTTCTCTAGCTTCCTGCTGCT
TGACTTTTCTTTGACTGCGTTCAGCACGACCACCAGCGTGATTAAGATAA
TGGCGTTTGTCTTTTTCTATGCGGTGGGGTATGCAGCAGTATTCAGCCTC
ACAACCTCCGTCCTTCCGGAGTTTGGAAAGCAGAAACTTGGGTTCAGGTC
CAACTTTAATCTCATGGTTCTTTTCGCGTCCGGGTCACTAGGTTCATATC
TTTCGGCCGCTACACGTTCTGCCACCGGAACATACAAGTGGGCATTTGTA
TGGAATGGTTTATCATGGGTGTTCGTTATCGTGTCGGCGCTTGCTAAATA
TTTGTTGTATGATCGACGGGGCAGCATAAGCGATGCGGCTTCCGAGAGTC
AGGCGATATCACAAAAGCCAACCAGACAATGA
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protein sequence of Gvermi3317.t1

>Gvermi3317.t1 ID=Gvermi3317.t1|Name=Gvermi3317.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=494bp
MAAGPPAQNVPDKTSVSPTTTQAPGRWSIVAAASAVHALHAAAVYMVPST
LLSPMRHTLNLSVAEITRPLIAYRIVQTLFLLPAGLLLDAIGPQLCLRVA
MTAAAISAPLLPLTTSLSQLIVLQMFFALTKLFGGLSAMLLIVTSAFPGD
IGIGTATSVLLSGYSFAGFLAPAVIGSLSQRLGWRQASMLISMLFAVGSV
PVTFYFLREHPSAQRRQSIPMLWKQIKSRFGSYKPLQTAPPPSLSSTCAQ
VNDQRNSQTRGSKRQLASAATANGKNKEALFPAPYVLIAICVFAFSFSMH
IMFDHLLVFLTEDFGLPFDKATLFMSALNLVALLSKLAVGPLADRFNKSV
LMAVFGAVGAFSSFLLLDFSLTAFSTTTSVIKIMAFVFFYAVGYAAVFSL
TTSVLPEFGKQKLGFRSNFNLMVLFASGSLGSYLSAATRSATGTYKWAFV
WNGLSWVFVIVSALAKYLLYDRRGSISDAASESQAISQKPTRQ*
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mRNA from alignment at ScGOVlb_41:1015517..1017083+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3317.t1 ID=Gvermi3317.t1|Name=Gvermi3317.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1567bp|location=Sequence derived from alignment at ScGOVlb_41:1015517..1017083+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGCTGGTCCGCCTGCCCAAAATGTTCCAGACAAGACCTCTGTCTC
GCCGACCACAACACAGGCACCGGGAAGGTGGTCTATTGTGGCAGCTGCCT
CTGCCGTTCATGCGCTTCACGCTGCTGCGGTTTATATGGTCCCTTCCACA
TTGCTTTCTCCCATGCGGCATACTCTCAATCTCAGCGTTGCCGAAATCAC
ACGTCCGCTCATCGCGTATCGTATCGTGCAAACATTATTTCTTCTTCCCG
CGGGTTTGCTGCTTGACGCGATTGGCCCGCAGCTCTGTTTACGCGTTGCA
ATGACTGCCGCCGCTATATCGGCGCCTCTCTTGCCTCTAACCACTTCCTT
ATCTCAGCTTATCGTACTTCAAATGTTCTTTGCACTCACCAAATTGTTTG
GCGGCTTGTCGGCCATGCTACTCATAGTCACATCGGCGTTTCCGGGCGAC
ATTGGAATTGGCACGGCCACTAGTGTCTTGCTGAGCGGTTATTCCTTTGC
TGGGTTTCTCGCGCCTGCTGTTATCGGCTCCCTCTCACAAAGATTAGGCT
GGCGTCAAGCCAGTATGCTGATTTCTATGCTTTTTGCTGTAGGAAGCGTT
CCCGTCACGTTTTACTTTCTCAGAGAGCACCCCTCCGCTCAGCGCCGGCA
GTCGATTCCCATGCTTTGGAAACAAATTAAGTCGAGGTTTGGGAGTTACA
AGCCGTTGCAGACGGCCCCCCCCCCTTCATTATCCTCAACTTGTGCGCAG
GTAAACGATCAGAGGAATTCTCAAACAAGAGGGTCAAAGCGACAGTTAGC
ATCTGCGGCGACGGCGAACGGAAAAAACAAGGAAGCGCTCTTTCCAGCAC
CTTATGTTCTCATCGCGATTTGCGTGTTTGCGTTTTCGTTTTCAATGCAC
ATCATGTTCGATCATCTCCTGGTGTTTCTGACTGAGGATTTCGGTCTACC
ATTTGACAAGGCAACTTTATTCATGTCTGCGTTGAATTTAGTTGCCCTTC
TTTCAAAACTTGCCGTCGGTCCTTTGGCTGATCGGTTCAATAAGTCGGTT
TTGATGGCAGTCTTTGGCGCCGTTGGGGCTTTCTCTAGCTTCCTGCTGCT
TGACTTTTCTTTGACTGCGTTCAGCACGACCACCAGCGTGATTAAGATAA
TGGCGTTTGTCTTTTTCTGTACGTATACCGCGTTTCATTTTTGTTGTCTC
GGTGCGAAGAAGCTTACTAACCAGGGAAATGAACGCATGCACTACTTCAC
CAGATGCGGTGGGGTATGCAGCAGTATTCAGCCTCACAACCTCCGTCCTT
CCGGAGTTTGGAAAGCAGAAACTTGGGTTCAGGTCCAACTTTAATCTCAT
GGTTCTTTTCGCGTCCGGGTCACTAGGTTCATATCTTTCGGCCGCTACAC
GTTCTGCCACCGGAACATACAAGTGGGCATTTGTATGGAATGGTTTATCA
TGGGTGTTCGTTATCGTGTCGGCGCTTGCTAAATATTTGTTGTATGATCG
ACGGGGCAGCATAAGCGATGCGGCTTCCGAGAGTCAGGCGATATCACAAA
AGCCAACCAGACAATGA
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Coding sequence (CDS) from alignment at ScGOVlb_41:1015517..1017083+

>Gvermi3317.t1 ID=Gvermi3317.t1|Name=Gvermi3317.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1482bp|location=Sequence derived from alignment at ScGOVlb_41:1015517..1017083+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGCTGGTCCGCCTGCCCAAAATGTTCCAGACAAGACCTCTGTCTC
GCCGACCACAACACAGGCACCGGGAAGGTGGTCTATTGTGGCAGCTGCCT
CTGCCGTTCATGCGCTTCACGCTGCTGCGGTTTATATGGTCCCTTCCACA
TTGCTTTCTCCCATGCGGCATACTCTCAATCTCAGCGTTGCCGAAATCAC
ACGTCCGCTCATCGCGTATCGTATCGTGCAAACATTATTTCTTCTTCCCG
CGGGTTTGCTGCTTGACGCGATTGGCCCGCAGCTCTGTTTACGCGTTGCA
ATGACTGCCGCCGCTATATCGGCGCCTCTCTTGCCTCTAACCACTTCCTT
ATCTCAGCTTATCGTACTTCAAATGTTCTTTGCACTCACCAAATTGTTTG
GCGGCTTGTCGGCCATGCTACTCATAGTCACATCGGCGTTTCCGGGCGAC
ATTGGAATTGGCACGGCCACTAGTGTCTTGCTGAGCGGTTATTCCTTTGC
TGGGTTTCTCGCGCCTGCTGTTATCGGCTCCCTCTCACAAAGATTAGGCT
GGCGTCAAGCCAGTATGCTGATTTCTATGCTTTTTGCTGTAGGAAGCGTT
CCCGTCACGTTTTACTTTCTCAGAGAGCACCCCTCCGCTCAGCGCCGGCA
GTCGATTCCCATGCTTTGGAAACAAATTAAGTCGAGGTTTGGGAGTTACA
AGCCGTTGCAGACGGCCCCCCCCCCTTCATTATCCTCAACTTGTGCGCAG
GTAAACGATCAGAGGAATTCTCAAACAAGAGGGTCAAAGCGACAGTTAGC
ATCTGCGGCGACGGCGAACGGAAAAAACAAGGAAGCGCTCTTTCCAGCAC
CTTATGTTCTCATCGCGATTTGCGTGTTTGCGTTTTCGTTTTCAATGCAC
ATCATGTTCGATCATCTCCTGGTGTTTCTGACTGAGGATTTCGGTCTACC
ATTTGACAAGGCAACTTTATTCATGTCTGCGTTGAATTTAGTTGCCCTTC
TTTCAAAACTTGCCGTCGGTCCTTTGGCTGATCGGTTCAATAAGTCGGTT
TTGATGGCAGTCTTTGGCGCCGTTGGGGCTTTCTCTAGCTTCCTGCTGCT
TGACTTTTCTTTGACTGCGTTCAGCACGACCACCAGCGTGATTAAGATAA
TGGCGTTTGTCTTTTTCTATGCGGTGGGGTATGCAGCAGTATTCAGCCTC
ACAACCTCCGTCCTTCCGGAGTTTGGAAAGCAGAAACTTGGGTTCAGGTC
CAACTTTAATCTCATGGTTCTTTTCGCGTCCGGGTCACTAGGTTCATATC
TTTCGGCCGCTACACGTTCTGCCACCGGAACATACAAGTGGGCATTTGTA
TGGAATGGTTTATCATGGGTGTTCGTTATCGTGTCGGCGCTTGCTAAATA
TTTGTTGTATGATCGACGGGGCAGCATAAGCGATGCGGCTTCCGAGAGTC
AGGCGATATCACAAAAGCCAACCAGACAATGA
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