Gvermi3316.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3316.t2
Unique NameGvermi3316.t2
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length108
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:1013993..1014316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LTH8
PFAMsInositol_P
Max annot lvl2759|Eukaryota
KEGG rclassRC00078
KEGG koko:K01092
KEGG ReactionR01185,R01186,R01187
KEGG Pathwayko00521,ko00562,ko01100,ko04070,map00521,map00562,map01100,map04070
KEGG ModuleM00131
Evalue4.13e-15
EggNOG OGsCOG0483@1|root,KOG2951@2759|Eukaryota
EC3.1.3.25
DescriptionInositol-1-monophosphatase
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3316Gvermi3316Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 1013417..1014316 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3316.t2.start1Gvermi3316.t2.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 1013993..1013995 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3316.t2.CDS1Gvermi3316.t2.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 1013993..1014316 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3316.t2.exon1Gvermi3316.t2.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 1013993..1014316 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3316.t2.stop1Gvermi3316.t2.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 1014314..1014316 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3316.t2Gvermi3316.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 1013993..1014316 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3316.t2 ID=Gvermi3316.t2|Name=Gvermi3316.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=108bp
MLAPNERLLMAGVRGIRQLGSGALDICYVGMGIADGVYCGVEDDKRDGWN
VWDYAAASVIAEEAGAIMRTVDGKEFHVEGDSMVCTTPGIMNALLEVLRE
GKNTGTA*
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spliced messenger RNA

>Gvermi3316.t2 ID=Gvermi3316.t2|Name=Gvermi3316.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=324bp|location=Sequence derived from alignment at ScGOVlb_41:1013993..1014316+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGCGCCGAACGAACGTCTACTCATGGCCGGTGTGCGTGGGATTAG
GCAGTTAGGGAGCGGTGCCTTGGATATATGTTATGTTGGAATGGGCATAG
CGGATGGTGTCTACTGTGGGGTGGAAGATGATAAACGAGATGGATGGAAT
GTCTGGGATTACGCAGCAGCAAGCGTGATTGCAGAGGAGGCCGGTGCGAT
CATGAGAACTGTGGATGGCAAGGAGTTTCATGTAGAAGGAGATAGTATGG
TGTGCACGACTCCCGGAATCATGAATGCCTTACTAGAGGTTTTGCGAGAG
GGTAAGAACACTGGAACGGCATAA
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protein sequence of Gvermi3316.t2

>Gvermi3316.t2 ID=Gvermi3316.t2|Name=Gvermi3316.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=108bp
MLAPNERLLMAGVRGIRQLGSGALDICYVGMGIADGVYCGVEDDKRDGWN
VWDYAAASVIAEEAGAIMRTVDGKEFHVEGDSMVCTTPGIMNALLEVLRE
GKNTGTA*
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mRNA from alignment at ScGOVlb_41:1013993..1014316+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3316.t2 ID=Gvermi3316.t2|Name=Gvermi3316.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=324bp|location=Sequence derived from alignment at ScGOVlb_41:1013993..1014316+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGGCGCCGAACGAACGTCTACTCATGGCCGGTGTGCGTGGGATTAG
GCAGTTAGGGAGCGGTGCCTTGGATATATGTTATGTTGGAATGGGCATAG
CGGATGGTGTCTACTGTGGGGTGGAAGATGATAAACGAGATGGATGGAAT
GTCTGGGATTACGCAGCAGCAAGCGTGATTGCAGAGGAGGCCGGTGCGAT
CATGAGAACTGTGGATGGCAAGGAGTTTCATGTAGAAGGAGATAGTATGG
TGTGCACGACTCCCGGAATCATGAATGCCTTACTAGAGGTTTTGCGAGAG
GGTAAGAACACTGGAACGGCATAA
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Coding sequence (CDS) from alignment at ScGOVlb_41:1013993..1014316+

>Gvermi3316.t2 ID=Gvermi3316.t2|Name=Gvermi3316.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=324bp|location=Sequence derived from alignment at ScGOVlb_41:1013993..1014316+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGGCGCCGAACGAACGTCTACTCATGGCCGGTGTGCGTGGGATTAG
GCAGTTAGGGAGCGGTGCCTTGGATATATGTTATGTTGGAATGGGCATAG
CGGATGGTGTCTACTGTGGGGTGGAAGATGATAAACGAGATGGATGGAAT
GTCTGGGATTACGCAGCAGCAAGCGTGATTGCAGAGGAGGCCGGTGCGAT
CATGAGAACTGTGGATGGCAAGGAGTTTCATGTAGAAGGAGATAGTATGG
TGTGCACGACTCCCGGAATCATGAATGCCTTACTAGAGGTTTTGCGAGAG
GGTAAGAACACTGGAACGGCATAA
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