Gvermi3298.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi3298.t1
Unique Name	Gvermi3298.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	643

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_41	contig	ScGOVlb_41:951812..953740 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	73501.XP_006667585.1
Preferred name	UTP5
PFAMs	Utp12
Max annot lvl	4751\|Fungi
KEGG ko	ko:K14546
KEGG Pathway	ko03008,map03008
GOs	GO:0000462,GO:0000785,GO:0000792,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0006139,GO:0006355,GO:0006356,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0033553,GO:0034455,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045893,GO:0045935,GO:0045943,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2001141
Evalue	5.34e-12
EggNOG OGs	KOG4547@1\|root,KOG4547@2759\|Eukaryota,38HDH@33154\|Opisthokonta,3NWZN@4751\|Fungi,3QQ7G@4890\|Ascomycota,212BX@147550\|Sordariomycetes,3TH2M@5125\|Hypocreales
Description	Dip2/Utp12 Family
COG category	S
BRITE	ko00000,ko00001,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi3298	Gvermi3298	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_41 951812..953740 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3298.t1.start1	Gvermi3298.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_41 951812..951814 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3298.t1.CDS1	Gvermi3298.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_41 951812..953740 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3298.t1.exon1	Gvermi3298.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_41 951812..953740 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3298.t1.stop1	Gvermi3298.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_41 953738..953740 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3298.t1	Gvermi3298.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_41 951812..953740 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_41:951812..953740+
coding sequence from alignment at ScGOVlb_41:951812..953740+

mRNA sequence

>Gvermi3298.t1 ID=Gvermi3298.t1|Name=Gvermi3298.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=643bp
MGANRLPPPPRSALWAAAADIPAVAHACPPAKLALFRAPEFTPEHVALPI
LPARLSLAAAESPSDPPSVLFSTAAGHVYLSNRLLLRMPSAPSALVHDYR
HALVVSARTLTVIPIASPNEHINIAHVHAAPPSAALFLDSERVVLASQQI
TLHGLPSARLVARFAGHASPVVCLARLSAKAFVSAAARERTLLVWHLQPK
GATQRKRRRLAPTAPSFSLKVPSAGVRSMVADSRSNGKHLAAIVGSNEVV
VWKGLPDTASAPVECSFVVRAPDVPVLSVLFAERARLTVLYGRGATPEVH
TVDLHKVSSDLVELPRASIELITADVQGKPNAKVELVKQSVALQSSNVPA
APLASKRKQDLEDGEEHHESGDEEEIDEDPSIREKLAALGVTSDTPRPEV
PTTPALEATRLDSRVVILCQAVRVRDDNMFDRIINSTQDLTTIRSTVDQM
PTEVAAGALLDMLVDRLERLPKRVDKLLMWIRTILIEHAGTFISQQHNQT
LHALGAIIDARTQNLDALSRLEGRLELVVGQAQRQRRLKQSKLSTAEAKV
EYTYDPSDVIREGKNAGSEGESSAEEESDDSSGSDDEDDTGVMSDSDSER
SEHSEERGGAQENGDVKMNGNKTDSNSEDSSDSEQSADGEGD*

spliced messenger RNA

>Gvermi3298.t1 ID=Gvermi3298.t1|Name=Gvermi3298.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1929bp|location=Sequence derived from alignment at ScGOVlb_41:951812..953740+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGCCAACCGCCTTCCGCCCCCCCCTCGCTCCGCGCTCTGGGCTGC
GGCGGCCGACATACCTGCCGTCGCGCACGCGTGCCCGCCCGCCAAGCTCG
CCCTCTTCCGTGCCCCCGAATTCACACCGGAGCATGTCGCGCTTCCGATA
CTTCCCGCCCGTCTCTCGCTTGCTGCAGCTGAGTCTCCTTCCGATCCACC
ATCTGTCCTGTTTTCCACTGCCGCGGGCCATGTATATCTCTCCAACCGTC
TGTTACTTCGCATGCCATCTGCCCCATCCGCACTGGTTCATGACTATCGC
CATGCGCTCGTGGTCTCTGCGCGCACGCTTACCGTTATTCCTATCGCTTC
CCCGAACGAACATATCAACATCGCCCATGTTCATGCTGCCCCGCCTTCTG
CTGCGCTCTTCCTGGACTCTGAGCGGGTAGTACTGGCTAGCCAGCAGATA
ACGCTACACGGGCTCCCCTCCGCACGCCTTGTCGCGCGGTTTGCCGGGCA
TGCCTCACCCGTTGTGTGTCTGGCACGTCTGTCAGCAAAGGCGTTCGTAT
CGGCAGCCGCACGAGAACGTACGCTCCTCGTGTGGCATCTGCAACCAAAA
GGCGCGACTCAGCGGAAACGCCGCCGGCTCGCGCCGACCGCGCCATCGTT
CTCCTTGAAAGTACCAAGCGCAGGCGTTCGATCGATGGTTGCTGATAGCC
GCTCAAACGGAAAGCACTTGGCTGCCATCGTTGGGTCTAATGAAGTGGTC
GTGTGGAAAGGGTTGCCCGATACAGCCTCTGCTCCAGTTGAATGTTCTTT
TGTAGTACGTGCGCCAGATGTACCGGTTTTATCTGTGCTGTTTGCAGAGC
GAGCGCGCTTGACCGTGCTTTACGGCCGGGGGGCGACGCCTGAAGTACAT
ACTGTAGACTTGCACAAAGTTTCTTCGGATCTTGTTGAGCTCCCCCGCGC
GTCCATTGAACTTATCACCGCTGATGTGCAAGGGAAGCCGAATGCGAAGG
TTGAACTTGTGAAACAATCTGTGGCGCTTCAATCTAGTAACGTGCCAGCT
GCACCGCTTGCATCGAAAAGAAAACAGGACCTTGAGGATGGTGAAGAACA
TCATGAATCAGGGGATGAAGAAGAAATAGATGAAGATCCTTCAATACGTG
AAAAGCTCGCTGCTCTGGGTGTTACTTCCGATACACCGCGGCCTGAAGTT
CCGACCACACCGGCTTTGGAAGCTACTCGTCTTGATTCCCGCGTTGTAAT
ATTGTGCCAAGCAGTCCGAGTACGAGATGATAATATGTTCGATCGTATTA
TTAACTCCACACAAGATTTGACCACGATACGTAGCACGGTAGACCAGATG
CCGACAGAGGTGGCAGCGGGCGCGTTGTTGGATATGCTTGTCGATCGGCT
AGAGAGACTCCCGAAGCGTGTGGACAAGTTACTGATGTGGATCAGGACGA
TACTTATCGAACACGCTGGAACTTTTATTAGTCAACAGCATAATCAAACT
CTACATGCTCTGGGCGCCATTATTGATGCACGCACCCAAAACTTGGACGC
CCTGTCAAGATTAGAGGGGCGATTGGAGCTCGTGGTTGGACAAGCTCAAC
GACAAAGGCGATTAAAGCAGTCCAAGTTGTCCACTGCAGAAGCGAAAGTG
GAATACACATATGATCCGAGCGATGTAATACGAGAAGGAAAGAATGCTGG
AAGTGAGGGTGAAAGCAGCGCCGAGGAGGAAAGCGATGATAGCTCAGGCA
GCGACGACGAGGATGATACTGGAGTCATGAGTGATTCTGACAGTGAACGT
AGCGAACACAGCGAAGAAAGGGGAGGTGCGCAGGAAAACGGAGATGTGAA
AATGAATGGTAACAAGACTGACTCGAATTCGGAAGACAGTTCAGATAGTG
AACAAAGCGCTGATGGTGAGGGTGATTAG

protein sequence of Gvermi3298.t1

>Gvermi3298.t1 ID=Gvermi3298.t1|Name=Gvermi3298.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=643bp
MGANRLPPPPRSALWAAAADIPAVAHACPPAKLALFRAPEFTPEHVALPI
LPARLSLAAAESPSDPPSVLFSTAAGHVYLSNRLLLRMPSAPSALVHDYR
HALVVSARTLTVIPIASPNEHINIAHVHAAPPSAALFLDSERVVLASQQI
TLHGLPSARLVARFAGHASPVVCLARLSAKAFVSAAARERTLLVWHLQPK
GATQRKRRRLAPTAPSFSLKVPSAGVRSMVADSRSNGKHLAAIVGSNEVV
VWKGLPDTASAPVECSFVVRAPDVPVLSVLFAERARLTVLYGRGATPEVH
TVDLHKVSSDLVELPRASIELITADVQGKPNAKVELVKQSVALQSSNVPA
APLASKRKQDLEDGEEHHESGDEEEIDEDPSIREKLAALGVTSDTPRPEV
PTTPALEATRLDSRVVILCQAVRVRDDNMFDRIINSTQDLTTIRSTVDQM
PTEVAAGALLDMLVDRLERLPKRVDKLLMWIRTILIEHAGTFISQQHNQT
LHALGAIIDARTQNLDALSRLEGRLELVVGQAQRQRRLKQSKLSTAEAKV
EYTYDPSDVIREGKNAGSEGESSAEEESDDSSGSDDEDDTGVMSDSDSER
SEHSEERGGAQENGDVKMNGNKTDSNSEDSSDSEQSADGEGD*

mRNA from alignment at ScGOVlb_41:951812..953740+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi3298.t1 ID=Gvermi3298.t1|Name=Gvermi3298.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1929bp|location=Sequence derived from alignment at ScGOVlb_41:951812..953740+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTGCCAACCGCCTTCCGCCCCCCCCTCGCTCCGCGCTCTGGGCTGC
GGCGGCCGACATACCTGCCGTCGCGCACGCGTGCCCGCCCGCCAAGCTCG
CCCTCTTCCGTGCCCCCGAATTCACACCGGAGCATGTCGCGCTTCCGATA
CTTCCCGCCCGTCTCTCGCTTGCTGCAGCTGAGTCTCCTTCCGATCCACC
ATCTGTCCTGTTTTCCACTGCCGCGGGCCATGTATATCTCTCCAACCGTC
TGTTACTTCGCATGCCATCTGCCCCATCCGCACTGGTTCATGACTATCGC
CATGCGCTCGTGGTCTCTGCGCGCACGCTTACCGTTATTCCTATCGCTTC
CCCGAACGAACATATCAACATCGCCCATGTTCATGCTGCCCCGCCTTCTG
CTGCGCTCTTCCTGGACTCTGAGCGGGTAGTACTGGCTAGCCAGCAGATA
ACGCTACACGGGCTCCCCTCCGCACGCCTTGTCGCGCGGTTTGCCGGGCA
TGCCTCACCCGTTGTGTGTCTGGCACGTCTGTCAGCAAAGGCGTTCGTAT
CGGCAGCCGCACGAGAACGTACGCTCCTCGTGTGGCATCTGCAACCAAAA
GGCGCGACTCAGCGGAAACGCCGCCGGCTCGCGCCGACCGCGCCATCGTT
CTCCTTGAAAGTACCAAGCGCAGGCGTTCGATCGATGGTTGCTGATAGCC
GCTCAAACGGAAAGCACTTGGCTGCCATCGTTGGGTCTAATGAAGTGGTC
GTGTGGAAAGGGTTGCCCGATACAGCCTCTGCTCCAGTTGAATGTTCTTT
TGTAGTACGTGCGCCAGATGTACCGGTTTTATCTGTGCTGTTTGCAGAGC
GAGCGCGCTTGACCGTGCTTTACGGCCGGGGGGCGACGCCTGAAGTACAT
ACTGTAGACTTGCACAAAGTTTCTTCGGATCTTGTTGAGCTCCCCCGCGC
GTCCATTGAACTTATCACCGCTGATGTGCAAGGGAAGCCGAATGCGAAGG
TTGAACTTGTGAAACAATCTGTGGCGCTTCAATCTAGTAACGTGCCAGCT
GCACCGCTTGCATCGAAAAGAAAACAGGACCTTGAGGATGGTGAAGAACA
TCATGAATCAGGGGATGAAGAAGAAATAGATGAAGATCCTTCAATACGTG
AAAAGCTCGCTGCTCTGGGTGTTACTTCCGATACACCGCGGCCTGAAGTT
CCGACCACACCGGCTTTGGAAGCTACTCGTCTTGATTCCCGCGTTGTAAT
ATTGTGCCAAGCAGTCCGAGTACGAGATGATAATATGTTCGATCGTATTA
TTAACTCCACACAAGATTTGACCACGATACGTAGCACGGTAGACCAGATG
CCGACAGAGGTGGCAGCGGGCGCGTTGTTGGATATGCTTGTCGATCGGCT
AGAGAGACTCCCGAAGCGTGTGGACAAGTTACTGATGTGGATCAGGACGA
TACTTATCGAACACGCTGGAACTTTTATTAGTCAACAGCATAATCAAACT
CTACATGCTCTGGGCGCCATTATTGATGCACGCACCCAAAACTTGGACGC
CCTGTCAAGATTAGAGGGGCGATTGGAGCTCGTGGTTGGACAAGCTCAAC
GACAAAGGCGATTAAAGCAGTCCAAGTTGTCCACTGCAGAAGCGAAAGTG
GAATACACATATGATCCGAGCGATGTAATACGAGAAGGAAAGAATGCTGG
AAGTGAGGGTGAAAGCAGCGCCGAGGAGGAAAGCGATGATAGCTCAGGCA
GCGACGACGAGGATGATACTGGAGTCATGAGTGATTCTGACAGTGAACGT
AGCGAACACAGCGAAGAAAGGGGAGGTGCGCAGGAAAACGGAGATGTGAA
AATGAATGGTAACAAGACTGACTCGAATTCGGAAGACAGTTCAGATAGTG
AACAAAGCGCTGATGGTGAGGGTGATTAG

Coding sequence (CDS) from alignment at ScGOVlb_41:951812..953740+

>Gvermi3298.t1 ID=Gvermi3298.t1|Name=Gvermi3298.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1929bp|location=Sequence derived from alignment at ScGOVlb_41:951812..953740+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTGCCAACCGCCTTCCGCCCCCCCCTCGCTCCGCGCTCTGGGCTGC
GGCGGCCGACATACCTGCCGTCGCGCACGCGTGCCCGCCCGCCAAGCTCG
CCCTCTTCCGTGCCCCCGAATTCACACCGGAGCATGTCGCGCTTCCGATA
CTTCCCGCCCGTCTCTCGCTTGCTGCAGCTGAGTCTCCTTCCGATCCACC
ATCTGTCCTGTTTTCCACTGCCGCGGGCCATGTATATCTCTCCAACCGTC
TGTTACTTCGCATGCCATCTGCCCCATCCGCACTGGTTCATGACTATCGC
CATGCGCTCGTGGTCTCTGCGCGCACGCTTACCGTTATTCCTATCGCTTC
CCCGAACGAACATATCAACATCGCCCATGTTCATGCTGCCCCGCCTTCTG
CTGCGCTCTTCCTGGACTCTGAGCGGGTAGTACTGGCTAGCCAGCAGATA
ACGCTACACGGGCTCCCCTCCGCACGCCTTGTCGCGCGGTTTGCCGGGCA
TGCCTCACCCGTTGTGTGTCTGGCACGTCTGTCAGCAAAGGCGTTCGTAT
CGGCAGCCGCACGAGAACGTACGCTCCTCGTGTGGCATCTGCAACCAAAA
GGCGCGACTCAGCGGAAACGCCGCCGGCTCGCGCCGACCGCGCCATCGTT
CTCCTTGAAAGTACCAAGCGCAGGCGTTCGATCGATGGTTGCTGATAGCC
GCTCAAACGGAAAGCACTTGGCTGCCATCGTTGGGTCTAATGAAGTGGTC
GTGTGGAAAGGGTTGCCCGATACAGCCTCTGCTCCAGTTGAATGTTCTTT
TGTAGTACGTGCGCCAGATGTACCGGTTTTATCTGTGCTGTTTGCAGAGC
GAGCGCGCTTGACCGTGCTTTACGGCCGGGGGGCGACGCCTGAAGTACAT
ACTGTAGACTTGCACAAAGTTTCTTCGGATCTTGTTGAGCTCCCCCGCGC
GTCCATTGAACTTATCACCGCTGATGTGCAAGGGAAGCCGAATGCGAAGG
TTGAACTTGTGAAACAATCTGTGGCGCTTCAATCTAGTAACGTGCCAGCT
GCACCGCTTGCATCGAAAAGAAAACAGGACCTTGAGGATGGTGAAGAACA
TCATGAATCAGGGGATGAAGAAGAAATAGATGAAGATCCTTCAATACGTG
AAAAGCTCGCTGCTCTGGGTGTTACTTCCGATACACCGCGGCCTGAAGTT
CCGACCACACCGGCTTTGGAAGCTACTCGTCTTGATTCCCGCGTTGTAAT
ATTGTGCCAAGCAGTCCGAGTACGAGATGATAATATGTTCGATCGTATTA
TTAACTCCACACAAGATTTGACCACGATACGTAGCACGGTAGACCAGATG
CCGACAGAGGTGGCAGCGGGCGCGTTGTTGGATATGCTTGTCGATCGGCT
AGAGAGACTCCCGAAGCGTGTGGACAAGTTACTGATGTGGATCAGGACGA
TACTTATCGAACACGCTGGAACTTTTATTAGTCAACAGCATAATCAAACT
CTACATGCTCTGGGCGCCATTATTGATGCACGCACCCAAAACTTGGACGC
CCTGTCAAGATTAGAGGGGCGATTGGAGCTCGTGGTTGGACAAGCTCAAC
GACAAAGGCGATTAAAGCAGTCCAAGTTGTCCACTGCAGAAGCGAAAGTG
GAATACACATATGATCCGAGCGATGTAATACGAGAAGGAAAGAATGCTGG
AAGTGAGGGTGAAAGCAGCGCCGAGGAGGAAAGCGATGATAGCTCAGGCA
GCGACGACGAGGATGATACTGGAGTCATGAGTGATTCTGACAGTGAACGT
AGCGAACACAGCGAAGAAAGGGGAGGTGCGCAGGAAAACGGAGATGTGAA
AATGAATGGTAACAAGACTGACTCGAATTCGGAAGACAGTTCAGATAGTG
AACAAAGCGCTGATGGTGAGGGTGATTAG