Gvermi3292.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi3292.t1
Unique Name	Gvermi3292.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	350

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_41	contig	ScGOVlb_41:939934..940983 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	164328.Phyra83833
PFAMs	Aminotran_4
Max annot lvl	4776\|Peronosporales
Evalue	6.33e-14
EggNOG OGs	2DS3H@1\|root,2S6F8@2759\|Eukaryota,3QDEM@4776\|Peronosporales
Description	Amino-transferase class IV
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi3292	Gvermi3292	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_41 939934..940983 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3292.t1.start1	Gvermi3292.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_41 939934..939936 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3292.t1.CDS1	Gvermi3292.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_41 939934..940983 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3292.t1.exon1	Gvermi3292.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_41 939934..940983 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3292.t1.stop1	Gvermi3292.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_41 940981..940983 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3292.t1	Gvermi3292.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_41 939934..940983 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_41:939934..940983+
coding sequence from alignment at ScGOVlb_41:939934..940983+

mRNA sequence

>Gvermi3292.t1 ID=Gvermi3292.t1|Name=Gvermi3292.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=350bp
MPRTQASSLHWNIFRGFDRLVLHISEVLDKRLSHITMGSEQNLPMIVECV
PSSEKTLRASLNVSLSEFMNDIPRAAYTTFVSVHGACIPQLDFHVDRIMK
GISNLCPNTVIPCRSLVMKLLCSIVDDAFIFHSQVGFELQFVSALSEGDD
GVITLRVHISRIKSFDQNTKPVVVECRGKPRRDPQIKNSAWYLERKPLQL
MRSEEAHETILVGRDSEGKMTLLEGLVSNLFVITKDLGVYTAPGDVVLPG
STRRLVLCACKELGLTVYEEAPRLSEWRSFAIGFLTNARTWLLPVCCILV
PSVEHREAGVNRRLELPAQDRALELLGEIRREVFNLALRDAYVPRRLRA*

spliced messenger RNA

>Gvermi3292.t1 ID=Gvermi3292.t1|Name=Gvermi3292.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1050bp|location=Sequence derived from alignment at ScGOVlb_41:939934..940983+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACGCACTCAAGCTTCAAGTCTGCATTGGAACATCTTTAGGGGTTT
TGATCGACTTGTGCTCCACATCTCTGAAGTTTTGGACAAGCGACTGAGCC
ACATCACCATGGGTTCTGAGCAGAATTTGCCGATGATTGTTGAATGCGTG
CCAAGTAGCGAGAAGACTTTGCGCGCCTCGCTGAATGTTTCTTTATCCGA
GTTCATGAATGACATTCCTCGTGCAGCGTACACCACATTTGTATCTGTCC
ATGGTGCATGCATTCCGCAACTCGATTTCCACGTTGATCGAATCATGAAG
GGTATTTCAAACCTGTGCCCGAATACCGTCATTCCTTGTAGATCTTTGGT
CATGAAACTACTGTGTTCCATCGTCGATGACGCTTTTATCTTCCATTCGC
AGGTTGGATTTGAACTGCAGTTTGTCAGCGCTTTGAGTGAAGGGGATGAC
GGTGTCATTACGCTTCGCGTTCATATCTCACGTATCAAATCATTTGATCA
AAACACCAAACCTGTGGTTGTTGAATGCAGGGGGAAACCACGTCGTGATC
CACAGATAAAGAATTCTGCGTGGTACCTTGAAAGGAAACCGCTCCAATTA
ATGCGTTCAGAAGAGGCGCATGAAACTATTCTTGTAGGCAGGGATTCAGA
AGGGAAGATGACTCTTCTTGAAGGGCTTGTGTCAAACCTGTTTGTGATTA
CGAAGGACTTGGGTGTATACACTGCGCCAGGTGATGTTGTTTTGCCGGGC
AGTACACGCCGACTAGTGCTTTGCGCATGCAAGGAACTTGGTTTGACCGT
TTATGAAGAGGCGCCGCGTCTGTCAGAATGGAGGAGTTTCGCGATTGGAT
TTCTCACAAATGCTCGCACTTGGCTTTTGCCGGTGTGTTGTATTCTGGTT
CCCTCAGTTGAGCATCGTGAGGCGGGGGTGAACCGGCGGTTAGAATTGCC
AGCTCAAGACCGTGCTCTGGAGCTTTTGGGAGAAATTCGTCGTGAGGTTT
TCAATCTTGCTCTGCGAGATGCATATGTGCCACGCAGGTTGCGCGCCTGA

protein sequence of Gvermi3292.t1

>Gvermi3292.t1 ID=Gvermi3292.t1|Name=Gvermi3292.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=350bp
MPRTQASSLHWNIFRGFDRLVLHISEVLDKRLSHITMGSEQNLPMIVECV
PSSEKTLRASLNVSLSEFMNDIPRAAYTTFVSVHGACIPQLDFHVDRIMK
GISNLCPNTVIPCRSLVMKLLCSIVDDAFIFHSQVGFELQFVSALSEGDD
GVITLRVHISRIKSFDQNTKPVVVECRGKPRRDPQIKNSAWYLERKPLQL
MRSEEAHETILVGRDSEGKMTLLEGLVSNLFVITKDLGVYTAPGDVVLPG
STRRLVLCACKELGLTVYEEAPRLSEWRSFAIGFLTNARTWLLPVCCILV
PSVEHREAGVNRRLELPAQDRALELLGEIRREVFNLALRDAYVPRRLRA*

mRNA from alignment at ScGOVlb_41:939934..940983+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi3292.t1 ID=Gvermi3292.t1|Name=Gvermi3292.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1050bp|location=Sequence derived from alignment at ScGOVlb_41:939934..940983+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCACGCACTCAAGCTTCAAGTCTGCATTGGAACATCTTTAGGGGTTT
TGATCGACTTGTGCTCCACATCTCTGAAGTTTTGGACAAGCGACTGAGCC
ACATCACCATGGGTTCTGAGCAGAATTTGCCGATGATTGTTGAATGCGTG
CCAAGTAGCGAGAAGACTTTGCGCGCCTCGCTGAATGTTTCTTTATCCGA
GTTCATGAATGACATTCCTCGTGCAGCGTACACCACATTTGTATCTGTCC
ATGGTGCATGCATTCCGCAACTCGATTTCCACGTTGATCGAATCATGAAG
GGTATTTCAAACCTGTGCCCGAATACCGTCATTCCTTGTAGATCTTTGGT
CATGAAACTACTGTGTTCCATCGTCGATGACGCTTTTATCTTCCATTCGC
AGGTTGGATTTGAACTGCAGTTTGTCAGCGCTTTGAGTGAAGGGGATGAC
GGTGTCATTACGCTTCGCGTTCATATCTCACGTATCAAATCATTTGATCA
AAACACCAAACCTGTGGTTGTTGAATGCAGGGGGAAACCACGTCGTGATC
CACAGATAAAGAATTCTGCGTGGTACCTTGAAAGGAAACCGCTCCAATTA
ATGCGTTCAGAAGAGGCGCATGAAACTATTCTTGTAGGCAGGGATTCAGA
AGGGAAGATGACTCTTCTTGAAGGGCTTGTGTCAAACCTGTTTGTGATTA
CGAAGGACTTGGGTGTATACACTGCGCCAGGTGATGTTGTTTTGCCGGGC
AGTACACGCCGACTAGTGCTTTGCGCATGCAAGGAACTTGGTTTGACCGT
TTATGAAGAGGCGCCGCGTCTGTCAGAATGGAGGAGTTTCGCGATTGGAT
TTCTCACAAATGCTCGCACTTGGCTTTTGCCGGTGTGTTGTATTCTGGTT
CCCTCAGTTGAGCATCGTGAGGCGGGGGTGAACCGGCGGTTAGAATTGCC
AGCTCAAGACCGTGCTCTGGAGCTTTTGGGAGAAATTCGTCGTGAGGTTT
TCAATCTTGCTCTGCGAGATGCATATGTGCCACGCAGGTTGCGCGCCTGA

Coding sequence (CDS) from alignment at ScGOVlb_41:939934..940983+

>Gvermi3292.t1 ID=Gvermi3292.t1|Name=Gvermi3292.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1050bp|location=Sequence derived from alignment at ScGOVlb_41:939934..940983+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCACGCACTCAAGCTTCAAGTCTGCATTGGAACATCTTTAGGGGTTT
TGATCGACTTGTGCTCCACATCTCTGAAGTTTTGGACAAGCGACTGAGCC
ACATCACCATGGGTTCTGAGCAGAATTTGCCGATGATTGTTGAATGCGTG
CCAAGTAGCGAGAAGACTTTGCGCGCCTCGCTGAATGTTTCTTTATCCGA
GTTCATGAATGACATTCCTCGTGCAGCGTACACCACATTTGTATCTGTCC
ATGGTGCATGCATTCCGCAACTCGATTTCCACGTTGATCGAATCATGAAG
GGTATTTCAAACCTGTGCCCGAATACCGTCATTCCTTGTAGATCTTTGGT
CATGAAACTACTGTGTTCCATCGTCGATGACGCTTTTATCTTCCATTCGC
AGGTTGGATTTGAACTGCAGTTTGTCAGCGCTTTGAGTGAAGGGGATGAC
GGTGTCATTACGCTTCGCGTTCATATCTCACGTATCAAATCATTTGATCA
AAACACCAAACCTGTGGTTGTTGAATGCAGGGGGAAACCACGTCGTGATC
CACAGATAAAGAATTCTGCGTGGTACCTTGAAAGGAAACCGCTCCAATTA
ATGCGTTCAGAAGAGGCGCATGAAACTATTCTTGTAGGCAGGGATTCAGA
AGGGAAGATGACTCTTCTTGAAGGGCTTGTGTCAAACCTGTTTGTGATTA
CGAAGGACTTGGGTGTATACACTGCGCCAGGTGATGTTGTTTTGCCGGGC
AGTACACGCCGACTAGTGCTTTGCGCATGCAAGGAACTTGGTTTGACCGT
TTATGAAGAGGCGCCGCGTCTGTCAGAATGGAGGAGTTTCGCGATTGGAT
TTCTCACAAATGCTCGCACTTGGCTTTTGCCGGTGTGTTGTATTCTGGTT
CCCTCAGTTGAGCATCGTGAGGCGGGGGTGAACCGGCGGTTAGAATTGCC
AGCTCAAGACCGTGCTCTGGAGCTTTTGGGAGAAATTCGTCGTGAGGTTT
TCAATCTTGCTCTGCGAGATGCATATGTGCCACGCAGGTTGCGCGCCTGA