Gvermi3282.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi3282.t1
Unique Name	Gvermi3282.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	700

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_41	contig	ScGOVlb_41:912189..914288 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	10224.XP_006823243.1
PFAMs	Nucleotid_trans
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K11714
Evalue	1.88e-26
EggNOG OGs	2CZA0@1\|root,2S9AH@2759\|Eukaryota,3ABW2@33154\|Opisthokonta,3BVK1@33208\|Metazoa,3DCNX@33213\|Bilateria
Description	Nucleotide-diphospho-sugar transferase
COG category	S
CAZy	GT77
BRITE	ko00000,ko01000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi3282	Gvermi3282	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_41 912189..914288 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3282.t1.start1	Gvermi3282.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_41 912189..912191 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3282.t1.CDS1	Gvermi3282.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_41 912189..914288 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3282.t1.exon1	Gvermi3282.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_41 912189..914288 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3282.t1.stop1	Gvermi3282.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_41 914286..914288 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3282.t1	Gvermi3282.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_41 912189..914288 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_41:912189..914288+
coding sequence from alignment at ScGOVlb_41:912189..914288+

mRNA sequence

>Gvermi3282.t1 ID=Gvermi3282.t1|Name=Gvermi3282.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=700bp
MPVTSTTRINRISRNLLRILRKSIVLSRLKPPKLWSLFVIALIIVLIFLR
VGLPKPVPKVTSLPLTFDLVRTTVSYSFSILVLIPSFTNSISSNGSSHVS
SSVDAYNYSSLTRLLDSLTNAEYDNAQTSLTLYLSPHRQPSEFEQLYHNL
SKFQWPHGPVQLQNASSGGLFDWVMNAWNPPRDSNDVTLIIDASAQDPLS
STYYKYVKSAVERHSEAQVAAYALSPVAIRRKGSKESHARVSEANQVFFY
QGAPLLSALAVRANVWRTFQTWFYAHRSEWFLWPIVVSPRDKKDAAWDHY
HGTSRAHWTLWFSRFCSEFELFNVYPTRKPSQPLPLHDGQEPIRIEAFNF
DGSLATSKSSISSEKLAKIIQLGKQTGGSVSMTLVNHAFLETARSWICNV
DVAHIRPPGVVWFTVDDTAYNSLKDVNGSYAIRMNEFRGGREREGTSYGT
PGYWLLMLERTKLIQAILNSGTGVFAFETDQVWLRDPIPFVNRLVHSGDE
VDIVGTIDTRHEIGGNFLYLNPTLAMRRTWREVCRRFEKSYKASRLHGHS
AKYKRYMENDQSILTKLVFFDQEFKNKNPTIFRALDTDLFVDGRWYDKKK
KYYSSSKSRSPILINNNFLVGIRNKKKRAIENGHWFLTHDKCNAERVEEA
IRLNEERAGNTVAVNSEHDKDLSSRMEGADVEAGLDAALVAIGLESGKS*

spliced messenger RNA

>Gvermi3282.t1 ID=Gvermi3282.t1|Name=Gvermi3282.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2100bp|location=Sequence derived from alignment at ScGOVlb_41:912189..914288+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGTAACATCAACGACCCGCATCAACCGAATTTCGCGCAACCTGCT
TCGCATTTTACGAAAGAGCATTGTACTCTCTAGACTTAAACCTCCGAAGT
TGTGGAGCTTGTTTGTCATCGCTCTGATTATTGTGCTCATTTTTCTGCGA
GTTGGTTTACCGAAACCTGTGCCCAAAGTGACCTCATTACCGCTCACTTT
TGATCTCGTCCGTACAACTGTCTCTTATTCTTTTTCGATTCTGGTTCTAA
TCCCTTCGTTCACGAACTCCATTTCTTCAAATGGTTCATCACATGTTTCT
AGTTCTGTGGATGCATACAACTATTCATCATTAACTCGACTACTTGATTC
TTTAACTAATGCAGAATATGATAACGCCCAAACAAGCCTCACTCTTTACT
TGTCGCCTCACAGACAGCCCAGCGAATTTGAGCAACTTTATCACAATCTT
TCCAAGTTTCAATGGCCACATGGTCCGGTACAATTACAAAATGCATCGTC
AGGTGGGCTATTCGACTGGGTTATGAACGCGTGGAACCCCCCCCGCGATA
GCAACGATGTAACTCTCATCATTGATGCTTCTGCACAAGACCCTCTATCA
TCAACATATTACAAATATGTCAAGTCGGCTGTGGAACGTCACTCCGAAGC
CCAGGTGGCTGCCTATGCGCTCTCACCTGTCGCAATTAGACGAAAGGGTT
CGAAGGAGTCTCATGCACGCGTTTCTGAAGCTAATCAAGTGTTCTTTTAT
CAAGGTGCGCCGCTTCTCTCTGCCCTTGCAGTACGGGCAAATGTGTGGCG
GACTTTTCAAACATGGTTTTATGCGCATCGCTCAGAATGGTTTCTCTGGC
CCATTGTCGTTTCCCCTCGTGATAAAAAGGATGCGGCTTGGGATCATTAT
CATGGTACTTCTCGAGCGCATTGGACTCTATGGTTTTCAAGATTTTGCTC
TGAGTTTGAATTGTTTAATGTGTATCCGACTCGGAAACCAAGTCAGCCGC
TACCTTTACATGATGGACAGGAACCCATAAGAATAGAAGCGTTCAATTTT
GATGGGAGTCTGGCGACGAGCAAGTCCAGCATATCTTCTGAGAAACTTGC
CAAGATTATTCAACTGGGGAAACAAACGGGTGGGTCAGTGTCAATGACAC
TCGTAAATCACGCATTCTTAGAAACCGCAAGAAGCTGGATTTGTAACGTT
GACGTCGCCCATATCAGGCCTCCTGGCGTGGTATGGTTCACTGTGGATGA
TACGGCGTATAATTCTTTGAAAGACGTGAATGGCTCGTATGCGATACGTA
TGAATGAATTTCGGGGAGGTCGGGAGAGAGAAGGTACGTCGTATGGCACG
CCGGGATATTGGTTGTTGATGCTAGAACGGACTAAATTAATCCAGGCTAT
CCTTAACAGCGGAACTGGTGTATTTGCGTTTGAAACAGACCAAGTGTGGC
TACGAGATCCCATTCCGTTCGTAAATCGACTTGTGCACAGCGGGGATGAA
GTTGATATCGTGGGCACGATAGATACCCGTCACGAAATTGGTGGAAACTT
CCTCTATCTGAATCCTACACTGGCAATGAGAAGGACGTGGCGTGAAGTCT
GTCGACGATTTGAAAAGTCGTACAAGGCCAGTCGACTCCATGGGCACTCG
GCAAAATACAAGCGGTACATGGAGAATGATCAGTCAATATTGACGAAACT
AGTTTTCTTTGACCAAGAGTTTAAGAACAAGAATCCTACGATATTCCGTG
CTCTTGACACAGACTTATTCGTCGATGGTCGATGGTATGACAAGAAGAAG
AAGTATTATAGTTCTTCGAAGTCAAGAAGCCCAATTCTGATCAACAACAA
TTTTCTGGTCGGAATTAGGAACAAGAAAAAACGCGCTATTGAAAATGGGC
ATTGGTTTTTGACACATGATAAGTGTAACGCTGAAAGAGTTGAGGAGGCC
ATAAGATTGAACGAAGAAAGAGCAGGGAATACTGTTGCCGTCAATAGTGA
ACATGACAAAGACTTGAGTTCTAGAATGGAGGGCGCTGATGTCGAAGCTG
GACTAGACGCTGCGCTTGTGGCTATTGGTTTGGAGAGTGGCAAATCGTAG

protein sequence of Gvermi3282.t1

>Gvermi3282.t1 ID=Gvermi3282.t1|Name=Gvermi3282.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=700bp
MPVTSTTRINRISRNLLRILRKSIVLSRLKPPKLWSLFVIALIIVLIFLR
VGLPKPVPKVTSLPLTFDLVRTTVSYSFSILVLIPSFTNSISSNGSSHVS
SSVDAYNYSSLTRLLDSLTNAEYDNAQTSLTLYLSPHRQPSEFEQLYHNL
SKFQWPHGPVQLQNASSGGLFDWVMNAWNPPRDSNDVTLIIDASAQDPLS
STYYKYVKSAVERHSEAQVAAYALSPVAIRRKGSKESHARVSEANQVFFY
QGAPLLSALAVRANVWRTFQTWFYAHRSEWFLWPIVVSPRDKKDAAWDHY
HGTSRAHWTLWFSRFCSEFELFNVYPTRKPSQPLPLHDGQEPIRIEAFNF
DGSLATSKSSISSEKLAKIIQLGKQTGGSVSMTLVNHAFLETARSWICNV
DVAHIRPPGVVWFTVDDTAYNSLKDVNGSYAIRMNEFRGGREREGTSYGT
PGYWLLMLERTKLIQAILNSGTGVFAFETDQVWLRDPIPFVNRLVHSGDE
VDIVGTIDTRHEIGGNFLYLNPTLAMRRTWREVCRRFEKSYKASRLHGHS
AKYKRYMENDQSILTKLVFFDQEFKNKNPTIFRALDTDLFVDGRWYDKKK
KYYSSSKSRSPILINNNFLVGIRNKKKRAIENGHWFLTHDKCNAERVEEA
IRLNEERAGNTVAVNSEHDKDLSSRMEGADVEAGLDAALVAIGLESGKS*

mRNA from alignment at ScGOVlb_41:912189..914288+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi3282.t1 ID=Gvermi3282.t1|Name=Gvermi3282.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2100bp|location=Sequence derived from alignment at ScGOVlb_41:912189..914288+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGGTAACATCAACGACCCGCATCAACCGAATTTCGCGCAACCTGCT
TCGCATTTTACGAAAGAGCATTGTACTCTCTAGACTTAAACCTCCGAAGT
TGTGGAGCTTGTTTGTCATCGCTCTGATTATTGTGCTCATTTTTCTGCGA
GTTGGTTTACCGAAACCTGTGCCCAAAGTGACCTCATTACCGCTCACTTT
TGATCTCGTCCGTACAACTGTCTCTTATTCTTTTTCGATTCTGGTTCTAA
TCCCTTCGTTCACGAACTCCATTTCTTCAAATGGTTCATCACATGTTTCT
AGTTCTGTGGATGCATACAACTATTCATCATTAACTCGACTACTTGATTC
TTTAACTAATGCAGAATATGATAACGCCCAAACAAGCCTCACTCTTTACT
TGTCGCCTCACAGACAGCCCAGCGAATTTGAGCAACTTTATCACAATCTT
TCCAAGTTTCAATGGCCACATGGTCCGGTACAATTACAAAATGCATCGTC
AGGTGGGCTATTCGACTGGGTTATGAACGCGTGGAACCCCCCCCGCGATA
GCAACGATGTAACTCTCATCATTGATGCTTCTGCACAAGACCCTCTATCA
TCAACATATTACAAATATGTCAAGTCGGCTGTGGAACGTCACTCCGAAGC
CCAGGTGGCTGCCTATGCGCTCTCACCTGTCGCAATTAGACGAAAGGGTT
CGAAGGAGTCTCATGCACGCGTTTCTGAAGCTAATCAAGTGTTCTTTTAT
CAAGGTGCGCCGCTTCTCTCTGCCCTTGCAGTACGGGCAAATGTGTGGCG
GACTTTTCAAACATGGTTTTATGCGCATCGCTCAGAATGGTTTCTCTGGC
CCATTGTCGTTTCCCCTCGTGATAAAAAGGATGCGGCTTGGGATCATTAT
CATGGTACTTCTCGAGCGCATTGGACTCTATGGTTTTCAAGATTTTGCTC
TGAGTTTGAATTGTTTAATGTGTATCCGACTCGGAAACCAAGTCAGCCGC
TACCTTTACATGATGGACAGGAACCCATAAGAATAGAAGCGTTCAATTTT
GATGGGAGTCTGGCGACGAGCAAGTCCAGCATATCTTCTGAGAAACTTGC
CAAGATTATTCAACTGGGGAAACAAACGGGTGGGTCAGTGTCAATGACAC
TCGTAAATCACGCATTCTTAGAAACCGCAAGAAGCTGGATTTGTAACGTT
GACGTCGCCCATATCAGGCCTCCTGGCGTGGTATGGTTCACTGTGGATGA
TACGGCGTATAATTCTTTGAAAGACGTGAATGGCTCGTATGCGATACGTA
TGAATGAATTTCGGGGAGGTCGGGAGAGAGAAGGTACGTCGTATGGCACG
CCGGGATATTGGTTGTTGATGCTAGAACGGACTAAATTAATCCAGGCTAT
CCTTAACAGCGGAACTGGTGTATTTGCGTTTGAAACAGACCAAGTGTGGC
TACGAGATCCCATTCCGTTCGTAAATCGACTTGTGCACAGCGGGGATGAA
GTTGATATCGTGGGCACGATAGATACCCGTCACGAAATTGGTGGAAACTT
CCTCTATCTGAATCCTACACTGGCAATGAGAAGGACGTGGCGTGAAGTCT
GTCGACGATTTGAAAAGTCGTACAAGGCCAGTCGACTCCATGGGCACTCG
GCAAAATACAAGCGGTACATGGAGAATGATCAGTCAATATTGACGAAACT
AGTTTTCTTTGACCAAGAGTTTAAGAACAAGAATCCTACGATATTCCGTG
CTCTTGACACAGACTTATTCGTCGATGGTCGATGGTATGACAAGAAGAAG
AAGTATTATAGTTCTTCGAAGTCAAGAAGCCCAATTCTGATCAACAACAA
TTTTCTGGTCGGAATTAGGAACAAGAAAAAACGCGCTATTGAAAATGGGC
ATTGGTTTTTGACACATGATAAGTGTAACGCTGAAAGAGTTGAGGAGGCC
ATAAGATTGAACGAAGAAAGAGCAGGGAATACTGTTGCCGTCAATAGTGA
ACATGACAAAGACTTGAGTTCTAGAATGGAGGGCGCTGATGTCGAAGCTG
GACTAGACGCTGCGCTTGTGGCTATTGGTTTGGAGAGTGGCAAATCGTAG

Coding sequence (CDS) from alignment at ScGOVlb_41:912189..914288+

>Gvermi3282.t1 ID=Gvermi3282.t1|Name=Gvermi3282.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2100bp|location=Sequence derived from alignment at ScGOVlb_41:912189..914288+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGGTAACATCAACGACCCGCATCAACCGAATTTCGCGCAACCTGCT
TCGCATTTTACGAAAGAGCATTGTACTCTCTAGACTTAAACCTCCGAAGT
TGTGGAGCTTGTTTGTCATCGCTCTGATTATTGTGCTCATTTTTCTGCGA
GTTGGTTTACCGAAACCTGTGCCCAAAGTGACCTCATTACCGCTCACTTT
TGATCTCGTCCGTACAACTGTCTCTTATTCTTTTTCGATTCTGGTTCTAA
TCCCTTCGTTCACGAACTCCATTTCTTCAAATGGTTCATCACATGTTTCT
AGTTCTGTGGATGCATACAACTATTCATCATTAACTCGACTACTTGATTC
TTTAACTAATGCAGAATATGATAACGCCCAAACAAGCCTCACTCTTTACT
TGTCGCCTCACAGACAGCCCAGCGAATTTGAGCAACTTTATCACAATCTT
TCCAAGTTTCAATGGCCACATGGTCCGGTACAATTACAAAATGCATCGTC
AGGTGGGCTATTCGACTGGGTTATGAACGCGTGGAACCCCCCCCGCGATA
GCAACGATGTAACTCTCATCATTGATGCTTCTGCACAAGACCCTCTATCA
TCAACATATTACAAATATGTCAAGTCGGCTGTGGAACGTCACTCCGAAGC
CCAGGTGGCTGCCTATGCGCTCTCACCTGTCGCAATTAGACGAAAGGGTT
CGAAGGAGTCTCATGCACGCGTTTCTGAAGCTAATCAAGTGTTCTTTTAT
CAAGGTGCGCCGCTTCTCTCTGCCCTTGCAGTACGGGCAAATGTGTGGCG
GACTTTTCAAACATGGTTTTATGCGCATCGCTCAGAATGGTTTCTCTGGC
CCATTGTCGTTTCCCCTCGTGATAAAAAGGATGCGGCTTGGGATCATTAT
CATGGTACTTCTCGAGCGCATTGGACTCTATGGTTTTCAAGATTTTGCTC
TGAGTTTGAATTGTTTAATGTGTATCCGACTCGGAAACCAAGTCAGCCGC
TACCTTTACATGATGGACAGGAACCCATAAGAATAGAAGCGTTCAATTTT
GATGGGAGTCTGGCGACGAGCAAGTCCAGCATATCTTCTGAGAAACTTGC
CAAGATTATTCAACTGGGGAAACAAACGGGTGGGTCAGTGTCAATGACAC
TCGTAAATCACGCATTCTTAGAAACCGCAAGAAGCTGGATTTGTAACGTT
GACGTCGCCCATATCAGGCCTCCTGGCGTGGTATGGTTCACTGTGGATGA
TACGGCGTATAATTCTTTGAAAGACGTGAATGGCTCGTATGCGATACGTA
TGAATGAATTTCGGGGAGGTCGGGAGAGAGAAGGTACGTCGTATGGCACG
CCGGGATATTGGTTGTTGATGCTAGAACGGACTAAATTAATCCAGGCTAT
CCTTAACAGCGGAACTGGTGTATTTGCGTTTGAAACAGACCAAGTGTGGC
TACGAGATCCCATTCCGTTCGTAAATCGACTTGTGCACAGCGGGGATGAA
GTTGATATCGTGGGCACGATAGATACCCGTCACGAAATTGGTGGAAACTT
CCTCTATCTGAATCCTACACTGGCAATGAGAAGGACGTGGCGTGAAGTCT
GTCGACGATTTGAAAAGTCGTACAAGGCCAGTCGACTCCATGGGCACTCG
GCAAAATACAAGCGGTACATGGAGAATGATCAGTCAATATTGACGAAACT
AGTTTTCTTTGACCAAGAGTTTAAGAACAAGAATCCTACGATATTCCGTG
CTCTTGACACAGACTTATTCGTCGATGGTCGATGGTATGACAAGAAGAAG
AAGTATTATAGTTCTTCGAAGTCAAGAAGCCCAATTCTGATCAACAACAA
TTTTCTGGTCGGAATTAGGAACAAGAAAAAACGCGCTATTGAAAATGGGC
ATTGGTTTTTGACACATGATAAGTGTAACGCTGAAAGAGTTGAGGAGGCC
ATAAGATTGAACGAAGAAAGAGCAGGGAATACTGTTGCCGTCAATAGTGA
ACATGACAAAGACTTGAGTTCTAGAATGGAGGGCGCTGATGTCGAAGCTG
GACTAGACGCTGCGCTTGTGGCTATTGGTTTGGAGAGTGGCAAATCGTAG