Gvermi3278.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3278.t1
Unique NameGvermi3278.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length286
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:895883..896908 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36080.S2JAT1
Preferred namePRE2
PFAMsProteasome
Max annot lvl4751|Fungi
KEGG koko:K02737
KEGG Pathwayko03050,map03050
KEGG ModuleM00340
GOsGO:0000502,GO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005839,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009896,GO:0009987,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016020,GO:0016043,GO:0016787,GO:0019538,GO:0019774,GO:0019941,GO:0022607,GO:0030071,GO:0030163,GO:0031331,GO:0031597,GO:0031984,GO:0032270,GO:0032436,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0034622,GO:0042175,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043248,GO:0043632,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0062033,GO:0065003,GO:0065007,GO:0070011,GO:0071704,GO:0071840,GO:0080129,GO:0090068,GO:0098827,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
Evalue4.13e-114
EggNOG OGsCOG0638@1|root,KOG0175@2759|Eukaryota,38EKC@33154|Opisthokonta,3NXDJ@4751|Fungi,1GT0C@112252|Fungi incertae sedis
EC3.4.25.1
DescriptionProteasome subunit
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3278Gvermi3278Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 895883..896908 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3278.t1Gvermi3278.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 895883..896908 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3278.t1.start1Gvermi3278.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 895883..895885 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3278.t1.CDS1Gvermi3278.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 895883..896279 +
Gvermi3278.t1.CDS2Gvermi3278.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 896380..896473 +
Gvermi3278.t1.CDS3Gvermi3278.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 896542..896908 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3278.t1.exon1Gvermi3278.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 895883..896279 +
Gvermi3278.t1.exon2Gvermi3278.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 896380..896473 +
Gvermi3278.t1.exon3Gvermi3278.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 896542..896908 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3278.t1.intron1Gvermi3278.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 896280..896379 +
Gvermi3278.t1.intron2Gvermi3278.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 896474..896541 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3278.t1.stop1Gvermi3278.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 896906..896908 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3278.t1 ID=Gvermi3278.t1|Name=Gvermi3278.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=286bp
MRTLDLLDEDLSISGSGKNAPDLDLEELSYSLGNELRIPAVERPSHFLRD
AFVNVPQKDRLKFAHGTTTLAFAFQGGIIVAVDSRASMGQYIGSGTVKKI
IEINPYLLGTMAGGAADCSFWERDLGRRCRLYELRNKERISVAAASKLLA
NTVYYYRGMGLSMGTMICGWDKTGPNIFYVDSDGTRFKGHIFSVGSGSTF
AYGVLDQGYSYEMSVEDAIKLGQKSIYHATHRDAASGGVINCYHVKEDGW
VKISSEDMMIQHKARLIERKAEDDATDAAKPTTAS*
back to top

spliced messenger RNA

>Gvermi3278.t1 ID=Gvermi3278.t1|Name=Gvermi3278.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=858bp|location=Sequence derived from alignment at ScGOVlb_41:895883..896908+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTACTTTGGATTTGCTCGATGAAGATCTATCTATAAGTGGGAGCGG
AAAAAACGCCCCTGATTTAGATCTCGAGGAACTATCTTATTCACTTGGGA
ATGAATTGCGAATCCCAGCAGTTGAACGCCCCTCCCATTTTCTTCGGGAT
GCATTTGTCAACGTTCCACAGAAGGACAGGCTCAAGTTTGCACATGGCAC
AACAACCCTTGCGTTTGCCTTTCAAGGAGGTATCATAGTTGCCGTTGACT
CCCGTGCCAGCATGGGACAGTACATTGGAAGTGGGACTGTCAAAAAGATC
ATTGAGATTAACCCGTATCTTTTGGGGACCATGGCAGGCGGCGCGGCAGA
CTGCAGTTTTTGGGAACGCGATCTAGGAAGACGATGCAGACTATATGAAT
TGCGGAACAAAGAACGCATATCCGTTGCAGCTGCATCAAAGTTACTAGCG
AACACTGTGTATTACTACCGTGGAATGGGTCTCTCGATGGGAACGATGAT
CTGTGGATGGGATAAAACGGGACCCAACATCTTCTACGTCGACTCCGATG
GGACGCGGTTTAAAGGACACATCTTTTCCGTTGGCTCAGGGTCGACTTTT
GCGTATGGAGTTCTTGACCAGGGGTATTCTTACGAAATGTCCGTAGAAGA
CGCGATCAAGCTGGGTCAGAAGTCGATTTATCATGCGACACACAGAGATG
CTGCATCCGGTGGTGTTATTAACTGCTACCATGTGAAGGAAGATGGATGG
GTGAAGATATCATCGGAAGATATGATGATCCAACACAAGGCCCGCTTGAT
TGAAAGAAAAGCTGAAGATGATGCAACCGATGCTGCCAAACCAACGACAG
CCTCTTAA
back to top

protein sequence of Gvermi3278.t1

>Gvermi3278.t1 ID=Gvermi3278.t1|Name=Gvermi3278.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=286bp
MRTLDLLDEDLSISGSGKNAPDLDLEELSYSLGNELRIPAVERPSHFLRD
AFVNVPQKDRLKFAHGTTTLAFAFQGGIIVAVDSRASMGQYIGSGTVKKI
IEINPYLLGTMAGGAADCSFWERDLGRRCRLYELRNKERISVAAASKLLA
NTVYYYRGMGLSMGTMICGWDKTGPNIFYVDSDGTRFKGHIFSVGSGSTF
AYGVLDQGYSYEMSVEDAIKLGQKSIYHATHRDAASGGVINCYHVKEDGW
VKISSEDMMIQHKARLIERKAEDDATDAAKPTTAS*
back to top

mRNA from alignment at ScGOVlb_41:895883..896908+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3278.t1 ID=Gvermi3278.t1|Name=Gvermi3278.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1026bp|location=Sequence derived from alignment at ScGOVlb_41:895883..896908+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGTACTTTGGATTTGCTCGATGAAGATCTATCTATAAGTGGGAGCGG
AAAAAACGCCCCTGATTTAGATCTCGAGGAACTATCTTATTCACTTGGGA
ATGAATTGCGAATCCCAGCAGTTGAACGCCCCTCCCATTTTCTTCGGGAT
GCATTTGTCAACGTTCCACAGAAGGACAGGCTCAAGTTTGCACATGGCAC
AACAACCCTTGCGTTTGCCTTTCAAGGAGGTATCATAGTTGCCGTTGACT
CCCGTGCCAGCATGGGACAGTACATTGGAAGTGGGACTGTCAAAAAGATC
ATTGAGATTAACCCGTATCTTTTGGGGACCATGGCAGGCGGCGCGGCAGA
CTGCAGTTTTTGGGAACGCGATCTAGGAAGACGATGCAGACTATATGGTA
TGTCATGATTTCATTGAAATTAACATCAGCGTAATGTATTTTGCGTTGGA
TCTGCTAACCTAATGACCCGAAAACTGGCCGAATTGAAATGCAACAGAAT
TGCGGAACAAAGAACGCATATCCGTTGCAGCTGCATCAAAGTTACTAGCG
AACACTGTGTATTACTACCGTGGAATGGGTCTCTCGATGGGGTGCGTGAC
TTTTTAAATCAGTCAAAGTCTAACAATTGCTAACCTATCTCTGTTCTTGT
ATGCTTTAGAACGATGATCTGTGGATGGGATAAAACGGGACCCAACATCT
TCTACGTCGACTCCGATGGGACGCGGTTTAAAGGACACATCTTTTCCGTT
GGCTCAGGGTCGACTTTTGCGTATGGAGTTCTTGACCAGGGGTATTCTTA
CGAAATGTCCGTAGAAGACGCGATCAAGCTGGGTCAGAAGTCGATTTATC
ATGCGACACACAGAGATGCTGCATCCGGTGGTGTTATTAACTGCTACCAT
GTGAAGGAAGATGGATGGGTGAAGATATCATCGGAAGATATGATGATCCA
ACACAAGGCCCGCTTGATTGAAAGAAAAGCTGAAGATGATGCAACCGATG
CTGCCAAACCAACGACAGCCTCTTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_41:895883..896908+

>Gvermi3278.t1 ID=Gvermi3278.t1|Name=Gvermi3278.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=858bp|location=Sequence derived from alignment at ScGOVlb_41:895883..896908+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGTACTTTGGATTTGCTCGATGAAGATCTATCTATAAGTGGGAGCGG
AAAAAACGCCCCTGATTTAGATCTCGAGGAACTATCTTATTCACTTGGGA
ATGAATTGCGAATCCCAGCAGTTGAACGCCCCTCCCATTTTCTTCGGGAT
GCATTTGTCAACGTTCCACAGAAGGACAGGCTCAAGTTTGCACATGGCAC
AACAACCCTTGCGTTTGCCTTTCAAGGAGGTATCATAGTTGCCGTTGACT
CCCGTGCCAGCATGGGACAGTACATTGGAAGTGGGACTGTCAAAAAGATC
ATTGAGATTAACCCGTATCTTTTGGGGACCATGGCAGGCGGCGCGGCAGA
CTGCAGTTTTTGGGAACGCGATCTAGGAAGACGATGCAGACTATATGAAT
TGCGGAACAAAGAACGCATATCCGTTGCAGCTGCATCAAAGTTACTAGCG
AACACTGTGTATTACTACCGTGGAATGGGTCTCTCGATGGGAACGATGAT
CTGTGGATGGGATAAAACGGGACCCAACATCTTCTACGTCGACTCCGATG
GGACGCGGTTTAAAGGACACATCTTTTCCGTTGGCTCAGGGTCGACTTTT
GCGTATGGAGTTCTTGACCAGGGGTATTCTTACGAAATGTCCGTAGAAGA
CGCGATCAAGCTGGGTCAGAAGTCGATTTATCATGCGACACACAGAGATG
CTGCATCCGGTGGTGTTATTAACTGCTACCATGTGAAGGAAGATGGATGG
GTGAAGATATCATCGGAAGATATGATGATCCAACACAAGGCCCGCTTGAT
TGAAAGAAAAGCTGAAGATGATGCAACCGATGCTGCCAAACCAACGACAG
CCTCTTAA
back to top