Gvermi3273.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3273.t1
Unique NameGvermi3273.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length277
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:885665..886578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1122137.AQXF01000003_gene2018
Preferred namectc
PFAMsRibosomal_L25p,Ribosomal_TL5_C
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02897
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue1.03e-10
EggNOG OGsCOG1825@1|root,COG1825@2|Bacteria,1RDH0@1224|Proteobacteria,2U5P0@28211|Alphaproteobacteria
DescriptionThis is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3273Gvermi3273Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 885665..886578 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3273.t1Gvermi3273.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 885665..886578 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3273.t1.start1Gvermi3273.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 885665..885667 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3273.t1.CDS1Gvermi3273.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 885665..885924 +
Gvermi3273.t1.CDS2Gvermi3273.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 886008..886578 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3273.t1.exon1Gvermi3273.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 885665..885924 +
Gvermi3273.t1.exon2Gvermi3273.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 886008..886578 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3273.t1.intron1Gvermi3273.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 885925..886007 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3273.t1.stop1Gvermi3273.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 886576..886578 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3273.t1 ID=Gvermi3273.t1|Name=Gvermi3273.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=277bp
MDRAGRMVQYATRVIRVANSNSIDKPLRFVANAVQNITDVSDKRNATIED
INLLDSSDPTLFHRTITGRLREGNKRASRRICKEGSWILACVEGRNKFPD
LTIQVPKAPLLEDMLAGRFALQKRGKTRFVGPLYELRIEENTMDEYGRLL
STADLPFQRLRALAHNIRIHPVGEYPLGVSFRYSPENEPVRVRVPVVCIN
QEKCPGMRDGGWLNRLQKCIDINVAPFTPAPQFVTMDVSGMKMKDKRFVG
DLHFERKGDGCRTVLGDDEPVVVISK*
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spliced messenger RNA

>Gvermi3273.t1 ID=Gvermi3273.t1|Name=Gvermi3273.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=831bp|location=Sequence derived from alignment at ScGOVlb_41:885665..886578+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCGAGCCGGTCGGATGGTTCAATACGCTACTCGCGTTATACGAGT
TGCAAATTCCAATTCCATTGACAAACCTCTCAGATTCGTCGCCAATGCTG
TTCAAAACATAACAGATGTCAGCGACAAACGGAATGCTACTATTGAAGAC
ATAAATCTGCTTGATTCATCCGATCCAACACTGTTTCATAGAACTATAAC
TGGAAGATTGCGAGAAGGAAATAAACGAGCCTCACGAAGGATCTGCAAGG
AAGGTTCTTGGATCTTAGCATGTGTTGAGGGTCGCAATAAGTTTCCCGAC
CTCACAATACAAGTTCCAAAAGCCCCTCTTCTCGAAGATATGCTGGCAGG
TAGGTTTGCTTTGCAGAAGAGAGGAAAGACTCGCTTTGTGGGGCCTTTGT
ATGAATTGAGGATAGAAGAAAACACAATGGACGAGTATGGTAGACTCTTG
AGCACTGCGGACCTTCCCTTTCAACGGCTACGGGCTCTGGCGCATAACAT
TCGGATACATCCTGTCGGGGAATATCCACTGGGCGTGTCGTTTCGGTATT
CTCCTGAAAACGAGCCTGTACGGGTCCGAGTACCTGTAGTGTGTATCAAT
CAGGAGAAATGCCCTGGTATGCGTGATGGTGGATGGCTCAATCGACTCCA
GAAATGCATTGATATCAATGTTGCTCCGTTTACCCCAGCTCCCCAGTTCG
TGACAATGGATGTGTCGGGAATGAAGATGAAGGACAAAAGATTTGTAGGA
GACTTGCATTTTGAAAGAAAGGGAGATGGGTGCCGAACTGTTTTAGGCGA
TGATGAGCCAGTGGTAGTCATTTCTAAATAA
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protein sequence of Gvermi3273.t1

>Gvermi3273.t1 ID=Gvermi3273.t1|Name=Gvermi3273.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=277bp
MDRAGRMVQYATRVIRVANSNSIDKPLRFVANAVQNITDVSDKRNATIED
INLLDSSDPTLFHRTITGRLREGNKRASRRICKEGSWILACVEGRNKFPD
LTIQVPKAPLLEDMLAGRFALQKRGKTRFVGPLYELRIEENTMDEYGRLL
STADLPFQRLRALAHNIRIHPVGEYPLGVSFRYSPENEPVRVRVPVVCIN
QEKCPGMRDGGWLNRLQKCIDINVAPFTPAPQFVTMDVSGMKMKDKRFVG
DLHFERKGDGCRTVLGDDEPVVVISK*
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mRNA from alignment at ScGOVlb_41:885665..886578+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3273.t1 ID=Gvermi3273.t1|Name=Gvermi3273.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=914bp|location=Sequence derived from alignment at ScGOVlb_41:885665..886578+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATCGAGCCGGTCGGATGGTTCAATACGCTACTCGCGTTATACGAGT
TGCAAATTCCAATTCCATTGACAAACCTCTCAGATTCGTCGCCAATGCTG
TTCAAAACATAACAGATGTCAGCGACAAACGGAATGCTACTATTGAAGAC
ATAAATCTGCTTGATTCATCCGATCCAACACTGTTTCATAGAACTATAAC
TGGAAGATTGCGAGAAGGAAATAAACGAGCCTCACGAAGGATCTGCAAGG
AAGGTTCTTGGTAAGTTACATGACCGAATAAAACCTCGTTAGTCTTACTG
TGAGAGTTAGATAAACTAACACAGATATATTACTGTGGAGAAGGATCTTA
GCATGTGTTGAGGGTCGCAATAAGTTTCCCGACCTCACAATACAAGTTCC
AAAAGCCCCTCTTCTCGAAGATATGCTGGCAGGTAGGTTTGCTTTGCAGA
AGAGAGGAAAGACTCGCTTTGTGGGGCCTTTGTATGAATTGAGGATAGAA
GAAAACACAATGGACGAGTATGGTAGACTCTTGAGCACTGCGGACCTTCC
CTTTCAACGGCTACGGGCTCTGGCGCATAACATTCGGATACATCCTGTCG
GGGAATATCCACTGGGCGTGTCGTTTCGGTATTCTCCTGAAAACGAGCCT
GTACGGGTCCGAGTACCTGTAGTGTGTATCAATCAGGAGAAATGCCCTGG
TATGCGTGATGGTGGATGGCTCAATCGACTCCAGAAATGCATTGATATCA
ATGTTGCTCCGTTTACCCCAGCTCCCCAGTTCGTGACAATGGATGTGTCG
GGAATGAAGATGAAGGACAAAAGATTTGTAGGAGACTTGCATTTTGAAAG
AAAGGGAGATGGGTGCCGAACTGTTTTAGGCGATGATGAGCCAGTGGTAG
TCATTTCTAAATAA
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Coding sequence (CDS) from alignment at ScGOVlb_41:885665..886578+

>Gvermi3273.t1 ID=Gvermi3273.t1|Name=Gvermi3273.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=831bp|location=Sequence derived from alignment at ScGOVlb_41:885665..886578+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATCGAGCCGGTCGGATGGTTCAATACGCTACTCGCGTTATACGAGT
TGCAAATTCCAATTCCATTGACAAACCTCTCAGATTCGTCGCCAATGCTG
TTCAAAACATAACAGATGTCAGCGACAAACGGAATGCTACTATTGAAGAC
ATAAATCTGCTTGATTCATCCGATCCAACACTGTTTCATAGAACTATAAC
TGGAAGATTGCGAGAAGGAAATAAACGAGCCTCACGAAGGATCTGCAAGG
AAGGTTCTTGGATCTTAGCATGTGTTGAGGGTCGCAATAAGTTTCCCGAC
CTCACAATACAAGTTCCAAAAGCCCCTCTTCTCGAAGATATGCTGGCAGG
TAGGTTTGCTTTGCAGAAGAGAGGAAAGACTCGCTTTGTGGGGCCTTTGT
ATGAATTGAGGATAGAAGAAAACACAATGGACGAGTATGGTAGACTCTTG
AGCACTGCGGACCTTCCCTTTCAACGGCTACGGGCTCTGGCGCATAACAT
TCGGATACATCCTGTCGGGGAATATCCACTGGGCGTGTCGTTTCGGTATT
CTCCTGAAAACGAGCCTGTACGGGTCCGAGTACCTGTAGTGTGTATCAAT
CAGGAGAAATGCCCTGGTATGCGTGATGGTGGATGGCTCAATCGACTCCA
GAAATGCATTGATATCAATGTTGCTCCGTTTACCCCAGCTCCCCAGTTCG
TGACAATGGATGTGTCGGGAATGAAGATGAAGGACAAAAGATTTGTAGGA
GACTTGCATTTTGAAAGAAAGGGAGATGGGTGCCGAACTGTTTTAGGCGA
TGATGAGCCAGTGGTAGTCATTTCTAAATAA
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