Gvermi3265.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3265.t2
Unique NameGvermi3265.t2
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length633
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:825325..827468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1168034.FH5T_06485
Max annot lvl976|Bacteroidetes
Evalue3.89e-17
EggNOG OGsCOG3291@1|root,COG4447@1|root,COG3291@2|Bacteria,COG4447@2|Bacteria,4NGJJ@976|Bacteroidetes,2FRXF@200643|Bacteroidia
DescriptionPkd domain containing protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3265Gvermi3265Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 825325..827468 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3265.t2Gvermi3265.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 825325..827468 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3265.t2.stop1Gvermi3265.t2.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 825325..825327 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3265.t2.CDS1Gvermi3265.t2.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 825325..825629 -
Gvermi3265.t2.CDS2Gvermi3265.t2.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 825768..826058 -
Gvermi3265.t2.CDS3Gvermi3265.t2.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 826166..827468 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3265.t2.exon1Gvermi3265.t2.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 825325..825629 -
Gvermi3265.t2.exon2Gvermi3265.t2.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 825768..826058 -
Gvermi3265.t2.exon3Gvermi3265.t2.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 826166..827468 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3265.t2.intron1Gvermi3265.t2.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 825630..825767 -
Gvermi3265.t2.intron2Gvermi3265.t2.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 826059..826165 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3265.t2.start1Gvermi3265.t2.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 827466..827468 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3265.t2 ID=Gvermi3265.t2|Name=Gvermi3265.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=633bp
MPTPLSRLRTIRPFLLASTLFTLLIARSSAVPLRSADSVPDHWAQLLSAD
RYELVSRPSWTTRASESSTNSSYSLGRATVDDYLPDAARTYAALDLDLSP
VARTKIFRGKGDKSTFECHVHDVPNNINIQRVMQKVITVCESSWVSSEKV
MMQLTFSDLGPPETLANGGGTFFVKMRDTFETVLPVAAAEAVRGRDLNGN
RKGDGRFDVLVAVNTNTPWYDGIDGSVPGNQYDLVTVILHEVYHNLLFAG
SIVVGNEGNQQTQDVASQAATLYKNYRTRFDSFLMNQGNCAVLSYLNDEQ
LSASTGRTTNQLLADAVCNDQLYWGYGNSKIAKLYSPRVFQRKSSIYHFD
PTATDQVNSLMFPTVKIGTWQHSISPTILQMQSISLNPEIPGANVGCVKP
LLNPTPKDTTIPAQQTNTEIFHGGIAPQIIVAEEEKISVMDFDLRQQVLL
SDDAGKYYTWLQRQDVNIENFPFLFWMGKGAQIKEIVCQEDDEGFHSIHE
EQDQGGAVIAWENMSVIGQVFGQMLLHVLHPGDEEGVQEDSGLLQVLLLQ
VRTIYMQIKFPMLQVFFQERFIKLSKMLEVAQPQQIFVQKSDPSIDETSD
DEAANNKSIDHETLDSLQTSINCKLSYLQEVL*
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spliced messenger RNA

>Gvermi3265.t2 ID=Gvermi3265.t2|Name=Gvermi3265.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1899bp|location=Sequence derived from alignment at ScGOVlb_41:825325..827468- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGACGCCTTTGTCGCGTTTGCGAACCATACGTCCATTCCTTCTCGC
ATCCACTCTTTTCACATTGCTTATCGCCCGGTCCTCTGCCGTTCCCCTCC
GCTCTGCAGACTCTGTCCCTGATCACTGGGCACAGTTGCTTAGCGCCGAT
CGATATGAGCTCGTATCTCGCCCATCGTGGACTACACGCGCCTCGGAGTC
CTCCACAAACTCTTCATACTCTCTCGGCCGCGCCACCGTTGACGATTACC
TTCCTGACGCAGCTCGCACCTATGCCGCACTTGACCTTGACCTCAGCCCT
GTTGCACGCACAAAGATCTTCAGGGGCAAGGGCGACAAGTCCACTTTCGA
ATGTCACGTTCATGATGTACCGAACAACATTAACATTCAGCGCGTGATGC
AGAAGGTCATAACCGTGTGTGAATCATCTTGGGTCTCCTCCGAAAAGGTT
ATGATGCAGCTCACATTCAGTGACCTGGGCCCACCTGAAACATTGGCAAA
CGGTGGAGGAACCTTTTTTGTCAAAATGCGGGATACTTTTGAAACAGTTC
TTCCTGTAGCTGCTGCCGAGGCCGTACGCGGAAGGGACCTGAACGGCAAT
AGAAAAGGTGATGGCCGATTTGATGTCCTGGTCGCCGTCAACACCAACAC
ACCGTGGTACGATGGCATTGACGGCTCCGTGCCTGGAAATCAGTATGACC
TCGTCACTGTCATATTACACGAAGTGTATCATAATCTTCTTTTCGCCGGA
AGTATCGTTGTTGGAAATGAGGGCAATCAGCAGACCCAAGACGTTGCCTC
GCAGGCTGCAACCCTTTACAAGAATTATCGCACCCGCTTCGACTCTTTCC
TGATGAATCAAGGAAATTGTGCAGTGCTCAGCTACCTCAATGATGAGCAG
CTTTCCGCTAGCACTGGCCGCACCACAAACCAGCTGCTTGCCGACGCGGT
TTGCAATGACCAGCTTTACTGGGGTTATGGCAACAGCAAGATAGCGAAGC
TGTACTCACCACGTGTATTTCAACGGAAAAGCTCAATATATCACTTCGAC
CCAACCGCAACGGATCAGGTCAACAGTCTCATGTTTCCGACGGTCAAGAT
TGGCACCTGGCAGCATAGTATCAGTCCCACTATTCTTCAGATGCAATCTA
TAAGTCTCAACCCAGAGATTCCAGGGGCCAACGTGGGGTGCGTGAAGCCG
TTGCTAAATCCTACTCCGAAAGATACCACTATCCCTGCGCAACAAACTAA
CACGGAGATTTTCCATGGTGGGATCGCACCACAAATTATCGTGGCGGAGG
AAGAAAAAATTTCCGTCATGGACTTCGATCTCAGGCAGCAGGTCCTTCTC
TCCGACGACGCTGGGAAGTACTACACGTGGTTACAGCGCCAGGACGTCAA
CATCGAAAACTTCCCTTTCCTCTTTTGGATGGGCAAAGGCGCCCAAATCA
AAGAAATCGTCTGCCAAGAAGACGACGAAGGCTTCCACAGCATCCACGAA
GAGCAAGACCAAGGAGGCGCCGTCATCGCATGGGAAAACATGTCCGTCAT
CGGGCAAGTCTTTGGACAAATGCTACTGCATGTTCTGCACCCCGGGGACG
AAGAAGGTGTGCAAGAAGACAGTGGTTTGCTGCAAGTGCTATTGCTGCAA
GTACGAACCATCTACATGCAAATCAAGTTCCCGATGCTGCAAGTCTTCTT
CCAAGAGCGCTTCATCAAGCTCTCCAAAATGCTCGAAGTCGCACAGCCAC
AGCAAATCTTCGTGCAAAAAAGTGACCCCTCCATCGACGAAACCTCCGAC
GACGAAGCCGCCAACAACAAAAGCATCGACCACGAAACACTCGACTCGTT
GCAAACCAGCATCAACTGCAAGCTGTCGTACCTGCAAGAAGTCCTGTAA
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protein sequence of Gvermi3265.t2

>Gvermi3265.t2 ID=Gvermi3265.t2|Name=Gvermi3265.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=633bp
MPTPLSRLRTIRPFLLASTLFTLLIARSSAVPLRSADSVPDHWAQLLSAD
RYELVSRPSWTTRASESSTNSSYSLGRATVDDYLPDAARTYAALDLDLSP
VARTKIFRGKGDKSTFECHVHDVPNNINIQRVMQKVITVCESSWVSSEKV
MMQLTFSDLGPPETLANGGGTFFVKMRDTFETVLPVAAAEAVRGRDLNGN
RKGDGRFDVLVAVNTNTPWYDGIDGSVPGNQYDLVTVILHEVYHNLLFAG
SIVVGNEGNQQTQDVASQAATLYKNYRTRFDSFLMNQGNCAVLSYLNDEQ
LSASTGRTTNQLLADAVCNDQLYWGYGNSKIAKLYSPRVFQRKSSIYHFD
PTATDQVNSLMFPTVKIGTWQHSISPTILQMQSISLNPEIPGANVGCVKP
LLNPTPKDTTIPAQQTNTEIFHGGIAPQIIVAEEEKISVMDFDLRQQVLL
SDDAGKYYTWLQRQDVNIENFPFLFWMGKGAQIKEIVCQEDDEGFHSIHE
EQDQGGAVIAWENMSVIGQVFGQMLLHVLHPGDEEGVQEDSGLLQVLLLQ
VRTIYMQIKFPMLQVFFQERFIKLSKMLEVAQPQQIFVQKSDPSIDETSD
DEAANNKSIDHETLDSLQTSINCKLSYLQEVL*
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mRNA from alignment at ScGOVlb_41:825325..827468-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3265.t2 ID=Gvermi3265.t2|Name=Gvermi3265.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2144bp|location=Sequence derived from alignment at ScGOVlb_41:825325..827468- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGACGCCTTTGTCGCGTTTGCGAACCATACGTCCATTCCTTCTCGC
ATCCACTCTTTTCACATTGCTTATCGCCCGGTCCTCTGCCGTTCCCCTCC
GCTCTGCAGACTCTGTCCCTGATCACTGGGCACAGTTGCTTAGCGCCGAT
CGATATGAGCTCGTATCTCGCCCATCGTGGACTACACGCGCCTCGGAGTC
CTCCACAAACTCTTCATACTCTCTCGGCCGCGCCACCGTTGACGATTACC
TTCCTGACGCAGCTCGCACCTATGCCGCACTTGACCTTGACCTCAGCCCT
GTTGCACGCACAAAGATCTTCAGGGGCAAGGGCGACAAGTCCACTTTCGA
ATGTCACGTTCATGATGTACCGAACAACATTAACATTCAGCGCGTGATGC
AGAAGGTCATAACCGTGTGTGAATCATCTTGGGTCTCCTCCGAAAAGGTT
ATGATGCAGCTCACATTCAGTGACCTGGGCCCACCTGAAACATTGGCAAA
CGGTGGAGGAACCTTTTTTGTCAAAATGCGGGATACTTTTGAAACAGTTC
TTCCTGTAGCTGCTGCCGAGGCCGTACGCGGAAGGGACCTGAACGGCAAT
AGAAAAGGTGATGGCCGATTTGATGTCCTGGTCGCCGTCAACACCAACAC
ACCGTGGTACGATGGCATTGACGGCTCCGTGCCTGGAAATCAGTATGACC
TCGTCACTGTCATATTACACGAAGTGTATCATAATCTTCTTTTCGCCGGA
AGTATCGTTGTTGGAAATGAGGGCAATCAGCAGACCCAAGACGTTGCCTC
GCAGGCTGCAACCCTTTACAAGAATTATCGCACCCGCTTCGACTCTTTCC
TGATGAATCAAGGAAATTGTGCAGTGCTCAGCTACCTCAATGATGAGCAG
CTTTCCGCTAGCACTGGCCGCACCACAAACCAGCTGCTTGCCGACGCGGT
TTGCAATGACCAGCTTTACTGGGGTTATGGCAACAGCAAGATAGCGAAGC
TGTACTCACCACGTGTATTTCAACGGAAAAGCTCAATATATCACTTCGAC
CCAACCGCAACGGATCAGGTCAACAGTCTCATGTTTCCGACGGTCAAGAT
TGGCACCTGGCAGCATAGTATCAGTCCCACTATTCTTCAGATGCAATCTA
TAAGTCTCAACCCAGAGATTCCAGGGGCCAACGTGGGGTGCGTGAAGCCG
TTGCTAAATCCTACTCCGAAAGATACCACTATCCCTGCGCAACAAACTAA
CACGGAGATTTTCCATGGTGGGATCGCACCACAAATTATCGTGGCGGAGG
AAGGTAGTGTCGGGGGATTCCCAACGTGGGGGATTGTCTTGCTGGCCATA
TTCGCATTTCTCCTCCTCGCTGCATTGTTGGGACTTTGCCTGGCTCTATG
TCTTCGAAAGAAAAAATTTCCGTCATGGACTTCGATCTCAGGCAGCAGGT
CCTTCTCTCCGACGACGCTGGGAAGTACTACACGTGGTTACAGCGCCAGG
ACGTCAACATCGAAAACTTCCCTTTCCTCTTTTGGATGGGCAAAGGCGCC
CAAATCAAAGAAATCGTCTGCCAAGAAGACGACGAAGGCTTCCACAGCAT
CCACGAAGAGCAAGACCAAGGAGGCGCCGTCATCGCATGGGAAAACATGT
CCGTCATCGGGCAAGTCTTTGGACAAATGCTACTGCATGTTCTGCACCCC
GGTTACCCCCCCCCCGCCAGTGGCATCTGTCCATCACTACGAACGGGATT
GCCCCCCCACAGCGTACAAGTGCAAGTACAAATGTCGCAAGCATTGCACA
CATAAATCCTCTCGCAAACACTCACACACATGTGAGAAGGGGACGAAGAA
GGTGTGCAAGAAGACAGTGGTTTGCTGCAAGTGCTATTGCTGCAAGTACG
AACCATCTACATGCAAATCAAGTTCCCGATGCTGCAAGTCTTCTTCCAAG
AGCGCTTCATCAAGCTCTCCAAAATGCTCGAAGTCGCACAGCCACAGCAA
ATCTTCGTGCAAAAAAGTGACCCCTCCATCGACGAAACCTCCGACGACGA
AGCCGCCAACAACAAAAGCATCGACCACGAAACACTCGACTCGTTGCAAA
CCAGCATCAACTGCAAGCTGTCGTACCTGCAAGAAGTCCTGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_41:825325..827468-

>Gvermi3265.t2 ID=Gvermi3265.t2|Name=Gvermi3265.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1899bp|location=Sequence derived from alignment at ScGOVlb_41:825325..827468- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGACGCCTTTGTCGCGTTTGCGAACCATACGTCCATTCCTTCTCGC
ATCCACTCTTTTCACATTGCTTATCGCCCGGTCCTCTGCCGTTCCCCTCC
GCTCTGCAGACTCTGTCCCTGATCACTGGGCACAGTTGCTTAGCGCCGAT
CGATATGAGCTCGTATCTCGCCCATCGTGGACTACACGCGCCTCGGAGTC
CTCCACAAACTCTTCATACTCTCTCGGCCGCGCCACCGTTGACGATTACC
TTCCTGACGCAGCTCGCACCTATGCCGCACTTGACCTTGACCTCAGCCCT
GTTGCACGCACAAAGATCTTCAGGGGCAAGGGCGACAAGTCCACTTTCGA
ATGTCACGTTCATGATGTACCGAACAACATTAACATTCAGCGCGTGATGC
AGAAGGTCATAACCGTGTGTGAATCATCTTGGGTCTCCTCCGAAAAGGTT
ATGATGCAGCTCACATTCAGTGACCTGGGCCCACCTGAAACATTGGCAAA
CGGTGGAGGAACCTTTTTTGTCAAAATGCGGGATACTTTTGAAACAGTTC
TTCCTGTAGCTGCTGCCGAGGCCGTACGCGGAAGGGACCTGAACGGCAAT
AGAAAAGGTGATGGCCGATTTGATGTCCTGGTCGCCGTCAACACCAACAC
ACCGTGGTACGATGGCATTGACGGCTCCGTGCCTGGAAATCAGTATGACC
TCGTCACTGTCATATTACACGAAGTGTATCATAATCTTCTTTTCGCCGGA
AGTATCGTTGTTGGAAATGAGGGCAATCAGCAGACCCAAGACGTTGCCTC
GCAGGCTGCAACCCTTTACAAGAATTATCGCACCCGCTTCGACTCTTTCC
TGATGAATCAAGGAAATTGTGCAGTGCTCAGCTACCTCAATGATGAGCAG
CTTTCCGCTAGCACTGGCCGCACCACAAACCAGCTGCTTGCCGACGCGGT
TTGCAATGACCAGCTTTACTGGGGTTATGGCAACAGCAAGATAGCGAAGC
TGTACTCACCACGTGTATTTCAACGGAAAAGCTCAATATATCACTTCGAC
CCAACCGCAACGGATCAGGTCAACAGTCTCATGTTTCCGACGGTCAAGAT
TGGCACCTGGCAGCATAGTATCAGTCCCACTATTCTTCAGATGCAATCTA
TAAGTCTCAACCCAGAGATTCCAGGGGCCAACGTGGGGTGCGTGAAGCCG
TTGCTAAATCCTACTCCGAAAGATACCACTATCCCTGCGCAACAAACTAA
CACGGAGATTTTCCATGGTGGGATCGCACCACAAATTATCGTGGCGGAGG
AAGAAAAAATTTCCGTCATGGACTTCGATCTCAGGCAGCAGGTCCTTCTC
TCCGACGACGCTGGGAAGTACTACACGTGGTTACAGCGCCAGGACGTCAA
CATCGAAAACTTCCCTTTCCTCTTTTGGATGGGCAAAGGCGCCCAAATCA
AAGAAATCGTCTGCCAAGAAGACGACGAAGGCTTCCACAGCATCCACGAA
GAGCAAGACCAAGGAGGCGCCGTCATCGCATGGGAAAACATGTCCGTCAT
CGGGCAAGTCTTTGGACAAATGCTACTGCATGTTCTGCACCCCGGGGACG
AAGAAGGTGTGCAAGAAGACAGTGGTTTGCTGCAAGTGCTATTGCTGCAA
GTACGAACCATCTACATGCAAATCAAGTTCCCGATGCTGCAAGTCTTCTT
CCAAGAGCGCTTCATCAAGCTCTCCAAAATGCTCGAAGTCGCACAGCCAC
AGCAAATCTTCGTGCAAAAAAGTGACCCCTCCATCGACGAAACCTCCGAC
GACGAAGCCGCCAACAACAAAAGCATCGACCACGAAACACTCGACTCGTT
GCAAACCAGCATCAACTGCAAGCTGTCGTACCTGCAAGAAGTCCTGTAA
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