Gvermi3260.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi3260.t1
Unique Name	Gvermi3260.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	332

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_41	contig	ScGOVlb_41:806762..807757 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	38833.XP_003055075.1
PFAMs	Pro_isomerase
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K01802
Evalue	2.56e-33
EggNOG OGs	COG0652@1\|root,KOG0865@2759\|Eukaryota,37MAX@33090\|Viridiplantae,34P72@3041\|Chlorophyta
EC	5.2.1.8
Description	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
COG category	O
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi3260	Gvermi3260	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_41 806762..807757 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3260.t1.start1	Gvermi3260.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_41 806762..806764 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3260.t1.CDS1	Gvermi3260.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_41 806762..807757 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3260.t1.exon1	Gvermi3260.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_41 806762..807757 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3260.t1.stop1	Gvermi3260.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_41 807755..807757 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3260.t1	Gvermi3260.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_41 806762..807757 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_41:806762..807757+
coding sequence from alignment at ScGOVlb_41:806762..807757+

mRNA sequence

>Gvermi3260.t1 ID=Gvermi3260.t1|Name=Gvermi3260.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=332bp
MSRRRPADLQTSLLDDDLEAATSDSTDGKQRSAPERVGRFFRTRPVTSLV
LVITLCVAAMLTFSAGRSVARIISRVSKQAMHPPEQITAIANLTEHDEEQ
APAPDEKGTLIDGSDARDAIQVAVEKRLDQKTHNERNAITESKCYRKFEP
GKLGSARTLCITDEFYFDISIGSTPVGRMVVGVFGDVVPKSAANFRALAT
CTGVFADDSLCYRQDSFHRVVTNFVAQGGSKATGRSIYGPTFQEEKSKDH
HSFLQHGERGVVSWAEYPIGSQFFILIRDQATYLDGNHVVFGIVTDGLDV
LDKIHDAPRTREEPTERITITDCGDVHKSMS*

spliced messenger RNA

>Gvermi3260.t1 ID=Gvermi3260.t1|Name=Gvermi3260.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=996bp|location=Sequence derived from alignment at ScGOVlb_41:806762..807757+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTAGACGCAGACCTGCAGATCTTCAAACGTCGTTATTGGATGACGA
TCTGGAGGCGGCTACGTCGGACTCTACGGATGGCAAACAACGCTCAGCCC
CCGAACGCGTCGGCCGTTTCTTCCGTACTCGCCCAGTCACTTCGCTGGTG
CTTGTTATTACACTGTGCGTGGCAGCCATGCTCACGTTCTCGGCCGGGCG
TTCTGTTGCTCGCATAATTTCCCGTGTCTCTAAACAAGCGATGCATCCTC
CGGAGCAAATAACAGCAATAGCCAATTTAACTGAGCACGACGAGGAGCAA
GCTCCAGCCCCGGACGAAAAAGGAACACTTATTGACGGCTCCGATGCAAG
AGATGCAATCCAGGTGGCCGTTGAAAAACGTCTTGATCAGAAGACCCATA
ATGAACGGAACGCCATCACAGAGTCGAAGTGTTACCGAAAATTTGAGCCA
GGAAAGCTGGGCTCTGCGCGTACTCTTTGCATTACTGACGAGTTTTATTT
CGACATCTCCATTGGAAGCACACCCGTTGGGAGGATGGTTGTTGGCGTCT
TCGGAGACGTTGTCCCGAAGAGCGCCGCAAATTTCCGTGCTTTAGCCACG
TGCACCGGAGTATTTGCAGATGATTCTCTTTGCTACAGGCAAGACTCCTT
CCACAGAGTCGTCACTAATTTCGTGGCTCAAGGTGGTTCGAAGGCCACCG
GTCGTTCTATATACGGTCCGACTTTTCAGGAGGAAAAATCTAAAGATCAT
CACAGTTTCCTGCAACATGGGGAACGCGGAGTGGTGTCCTGGGCTGAGTA
TCCTATCGGCAGCCAGTTTTTCATCCTCATTCGGGACCAGGCTACTTATC
TCGATGGAAATCATGTTGTCTTCGGCATCGTGACTGATGGGCTTGATGTC
CTTGACAAAATTCATGATGCCCCCCGCACAAGAGAAGAACCGACTGAAAG
AATCACCATTACTGATTGTGGAGACGTTCACAAGTCCATGTCATGA

protein sequence of Gvermi3260.t1

>Gvermi3260.t1 ID=Gvermi3260.t1|Name=Gvermi3260.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=332bp
MSRRRPADLQTSLLDDDLEAATSDSTDGKQRSAPERVGRFFRTRPVTSLV
LVITLCVAAMLTFSAGRSVARIISRVSKQAMHPPEQITAIANLTEHDEEQ
APAPDEKGTLIDGSDARDAIQVAVEKRLDQKTHNERNAITESKCYRKFEP
GKLGSARTLCITDEFYFDISIGSTPVGRMVVGVFGDVVPKSAANFRALAT
CTGVFADDSLCYRQDSFHRVVTNFVAQGGSKATGRSIYGPTFQEEKSKDH
HSFLQHGERGVVSWAEYPIGSQFFILIRDQATYLDGNHVVFGIVTDGLDV
LDKIHDAPRTREEPTERITITDCGDVHKSMS*

mRNA from alignment at ScGOVlb_41:806762..807757+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi3260.t1 ID=Gvermi3260.t1|Name=Gvermi3260.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=996bp|location=Sequence derived from alignment at ScGOVlb_41:806762..807757+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTAGACGCAGACCTGCAGATCTTCAAACGTCGTTATTGGATGACGA
TCTGGAGGCGGCTACGTCGGACTCTACGGATGGCAAACAACGCTCAGCCC
CCGAACGCGTCGGCCGTTTCTTCCGTACTCGCCCAGTCACTTCGCTGGTG
CTTGTTATTACACTGTGCGTGGCAGCCATGCTCACGTTCTCGGCCGGGCG
TTCTGTTGCTCGCATAATTTCCCGTGTCTCTAAACAAGCGATGCATCCTC
CGGAGCAAATAACAGCAATAGCCAATTTAACTGAGCACGACGAGGAGCAA
GCTCCAGCCCCGGACGAAAAAGGAACACTTATTGACGGCTCCGATGCAAG
AGATGCAATCCAGGTGGCCGTTGAAAAACGTCTTGATCAGAAGACCCATA
ATGAACGGAACGCCATCACAGAGTCGAAGTGTTACCGAAAATTTGAGCCA
GGAAAGCTGGGCTCTGCGCGTACTCTTTGCATTACTGACGAGTTTTATTT
CGACATCTCCATTGGAAGCACACCCGTTGGGAGGATGGTTGTTGGCGTCT
TCGGAGACGTTGTCCCGAAGAGCGCCGCAAATTTCCGTGCTTTAGCCACG
TGCACCGGAGTATTTGCAGATGATTCTCTTTGCTACAGGCAAGACTCCTT
CCACAGAGTCGTCACTAATTTCGTGGCTCAAGGTGGTTCGAAGGCCACCG
GTCGTTCTATATACGGTCCGACTTTTCAGGAGGAAAAATCTAAAGATCAT
CACAGTTTCCTGCAACATGGGGAACGCGGAGTGGTGTCCTGGGCTGAGTA
TCCTATCGGCAGCCAGTTTTTCATCCTCATTCGGGACCAGGCTACTTATC
TCGATGGAAATCATGTTGTCTTCGGCATCGTGACTGATGGGCTTGATGTC
CTTGACAAAATTCATGATGCCCCCCGCACAAGAGAAGAACCGACTGAAAG
AATCACCATTACTGATTGTGGAGACGTTCACAAGTCCATGTCATGA

Coding sequence (CDS) from alignment at ScGOVlb_41:806762..807757+

>Gvermi3260.t1 ID=Gvermi3260.t1|Name=Gvermi3260.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=996bp|location=Sequence derived from alignment at ScGOVlb_41:806762..807757+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTAGACGCAGACCTGCAGATCTTCAAACGTCGTTATTGGATGACGA
TCTGGAGGCGGCTACGTCGGACTCTACGGATGGCAAACAACGCTCAGCCC
CCGAACGCGTCGGCCGTTTCTTCCGTACTCGCCCAGTCACTTCGCTGGTG
CTTGTTATTACACTGTGCGTGGCAGCCATGCTCACGTTCTCGGCCGGGCG
TTCTGTTGCTCGCATAATTTCCCGTGTCTCTAAACAAGCGATGCATCCTC
CGGAGCAAATAACAGCAATAGCCAATTTAACTGAGCACGACGAGGAGCAA
GCTCCAGCCCCGGACGAAAAAGGAACACTTATTGACGGCTCCGATGCAAG
AGATGCAATCCAGGTGGCCGTTGAAAAACGTCTTGATCAGAAGACCCATA
ATGAACGGAACGCCATCACAGAGTCGAAGTGTTACCGAAAATTTGAGCCA
GGAAAGCTGGGCTCTGCGCGTACTCTTTGCATTACTGACGAGTTTTATTT
CGACATCTCCATTGGAAGCACACCCGTTGGGAGGATGGTTGTTGGCGTCT
TCGGAGACGTTGTCCCGAAGAGCGCCGCAAATTTCCGTGCTTTAGCCACG
TGCACCGGAGTATTTGCAGATGATTCTCTTTGCTACAGGCAAGACTCCTT
CCACAGAGTCGTCACTAATTTCGTGGCTCAAGGTGGTTCGAAGGCCACCG
GTCGTTCTATATACGGTCCGACTTTTCAGGAGGAAAAATCTAAAGATCAT
CACAGTTTCCTGCAACATGGGGAACGCGGAGTGGTGTCCTGGGCTGAGTA
TCCTATCGGCAGCCAGTTTTTCATCCTCATTCGGGACCAGGCTACTTATC
TCGATGGAAATCATGTTGTCTTCGGCATCGTGACTGATGGGCTTGATGTC
CTTGACAAAATTCATGATGCCCCCCGCACAAGAGAAGAACCGACTGAAAG
AATCACCATTACTGATTGTGGAGACGTTCACAAGTCCATGTCATGA