Gvermi3254.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3254.t1
Unique NameGvermi3254.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length491
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:785340..786812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7G4N1
PFAMsGTP-bdg_M,GTP-bdg_N,MMR_HSR1,TMEM141
Max annot lvl2759|Eukaryota
KEGG koko:K03665
GOsGO:0000226,GO:0001578,GO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0034622,GO:0035082,GO:0036158,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0060271,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Evalue1.78e-138
EggNOG OGsCOG2262@1|root,KOG0410@2759|Eukaryota
Descriptionribosome binding
COG categoryO
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3254Gvermi3254Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 785340..786812 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3254.t1.stop1Gvermi3254.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 785340..785342 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3254.t1.CDS1Gvermi3254.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 785340..786812 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3254.t1.exon1Gvermi3254.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 785340..786812 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3254.t1.start1Gvermi3254.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 786810..786812 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3254.t1Gvermi3254.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 785340..786812 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3254.t1 ID=Gvermi3254.t1|Name=Gvermi3254.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=491bp
MMTAKPSETSEERYSLRVRREQDRELCVLVGVDATDKNRHTRIFSLEDSL
QELTRLAETAGMRVVSVVTQQLPVPYASTYIGTGKLAEVRREMESSGCLT
CIFDVELSPAQQRTLEHEFGGEERGIKVLDRTALILDIFAQHAATREGQL
QVELALYQYRLPRLTRMWTHLERQSGAGGVGLRGPGETQLEVDRRIINSK
VSKLKKDLELVRAHRSRVRQARKRNIGLPVVALIGYTNGGKSSLLNALSG
ADAVAANALFATLDPTTRRASVAGLKLSPEILVTDTVGFVQNLPTQLVAA
FRATLEEVVDADMLLHVVDGSDDQEVVQRKMKAVERVVEEIGAGGKPTVV
VLNKADLVAEDKVERVKGAIEREGEFECVTVSAKTGEGMDEMGMVIDEVL
RDTMRSVEVVIPYSRGDLTTAIYVQGSVEAEEFVNDGTMIQARVPLALGN
RLKKFMIDDCEGDDTDEEAMWVDLAKKRHSPRAVSVPEAA*
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spliced messenger RNA

>Gvermi3254.t1 ID=Gvermi3254.t1|Name=Gvermi3254.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1473bp|location=Sequence derived from alignment at ScGOVlb_41:785340..786812- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGACCGCGAAGCCCTCGGAAACTTCGGAAGAACGGTATTCCCTTCG
AGTTCGTCGCGAACAAGACCGCGAACTTTGCGTCCTGGTCGGTGTAGATG
CAACAGACAAGAACCGGCACACTCGTATCTTTTCTCTCGAAGATTCATTG
CAAGAGCTTACTCGCCTAGCCGAGACAGCAGGTATGCGGGTTGTTTCGGT
AGTGACGCAGCAATTGCCCGTCCCCTACGCCTCCACCTACATTGGTACTG
GAAAGCTTGCTGAAGTGCGAAGGGAGATGGAAAGTTCGGGCTGTCTCACT
TGTATATTTGACGTGGAGCTGTCACCAGCCCAACAGCGCACATTGGAACA
TGAATTTGGGGGTGAAGAACGCGGAATCAAAGTGCTTGACCGTACAGCCC
TGATTCTGGACATATTTGCGCAACACGCTGCAACGCGGGAGGGACAGTTA
CAGGTGGAGCTAGCGCTGTACCAATACCGATTGCCACGCCTGACTCGCAT
GTGGACCCATCTGGAACGGCAGTCTGGTGCAGGCGGGGTGGGGTTGCGTG
GACCAGGTGAGACTCAGCTCGAAGTGGACAGGCGGATAATCAACTCAAAA
GTGAGCAAACTGAAAAAAGATCTGGAGCTGGTACGCGCTCATAGAAGCCG
TGTGAGACAAGCTCGAAAGAGAAACATTGGATTACCCGTAGTGGCATTAA
TTGGGTACACAAACGGGGGGAAAAGCTCATTGCTCAATGCCCTTAGCGGG
GCAGATGCAGTCGCGGCGAATGCGCTGTTTGCAACTTTGGATCCAACAAC
AAGGCGTGCGAGCGTGGCTGGGCTGAAACTAAGCCCTGAGATTCTGGTAA
CTGATACTGTGGGATTTGTGCAGAACTTGCCTACGCAGCTAGTGGCCGCG
TTTCGAGCTACTTTGGAGGAAGTGGTAGATGCGGATATGCTTTTGCACGT
GGTGGATGGATCGGATGACCAGGAGGTTGTGCAGCGGAAGATGAAGGCAG
TTGAAAGAGTGGTGGAGGAGATTGGGGCTGGCGGGAAGCCGACAGTGGTT
GTGTTGAATAAGGCGGATTTAGTAGCGGAGGACAAGGTGGAGCGTGTGAA
GGGAGCAATCGAGAGGGAAGGCGAATTCGAATGCGTGACGGTGAGTGCGA
AGACGGGTGAGGGCATGGACGAGATGGGAATGGTGATCGACGAGGTTCTA
CGTGACACCATGCGCAGCGTGGAAGTGGTGATCCCGTACAGCCGCGGTGA
CCTGACAACGGCAATCTACGTGCAGGGCAGCGTGGAGGCGGAGGAGTTTG
TGAATGATGGTACGATGATCCAGGCTCGCGTGCCCTTGGCGCTAGGCAAC
CGACTGAAAAAATTTATGATAGACGACTGCGAGGGCGACGATACGGACGA
GGAGGCGATGTGGGTGGACCTGGCCAAGAAGCGTCACTCGCCGCGGGCGG
TGAGCGTGCCTGAAGCGGCGTGA
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protein sequence of Gvermi3254.t1

>Gvermi3254.t1 ID=Gvermi3254.t1|Name=Gvermi3254.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=491bp
MMTAKPSETSEERYSLRVRREQDRELCVLVGVDATDKNRHTRIFSLEDSL
QELTRLAETAGMRVVSVVTQQLPVPYASTYIGTGKLAEVRREMESSGCLT
CIFDVELSPAQQRTLEHEFGGEERGIKVLDRTALILDIFAQHAATREGQL
QVELALYQYRLPRLTRMWTHLERQSGAGGVGLRGPGETQLEVDRRIINSK
VSKLKKDLELVRAHRSRVRQARKRNIGLPVVALIGYTNGGKSSLLNALSG
ADAVAANALFATLDPTTRRASVAGLKLSPEILVTDTVGFVQNLPTQLVAA
FRATLEEVVDADMLLHVVDGSDDQEVVQRKMKAVERVVEEIGAGGKPTVV
VLNKADLVAEDKVERVKGAIEREGEFECVTVSAKTGEGMDEMGMVIDEVL
RDTMRSVEVVIPYSRGDLTTAIYVQGSVEAEEFVNDGTMIQARVPLALGN
RLKKFMIDDCEGDDTDEEAMWVDLAKKRHSPRAVSVPEAA*
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mRNA from alignment at ScGOVlb_41:785340..786812-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3254.t1 ID=Gvermi3254.t1|Name=Gvermi3254.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1473bp|location=Sequence derived from alignment at ScGOVlb_41:785340..786812- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGACCGCGAAGCCCTCGGAAACTTCGGAAGAACGGTATTCCCTTCG
AGTTCGTCGCGAACAAGACCGCGAACTTTGCGTCCTGGTCGGTGTAGATG
CAACAGACAAGAACCGGCACACTCGTATCTTTTCTCTCGAAGATTCATTG
CAAGAGCTTACTCGCCTAGCCGAGACAGCAGGTATGCGGGTTGTTTCGGT
AGTGACGCAGCAATTGCCCGTCCCCTACGCCTCCACCTACATTGGTACTG
GAAAGCTTGCTGAAGTGCGAAGGGAGATGGAAAGTTCGGGCTGTCTCACT
TGTATATTTGACGTGGAGCTGTCACCAGCCCAACAGCGCACATTGGAACA
TGAATTTGGGGGTGAAGAACGCGGAATCAAAGTGCTTGACCGTACAGCCC
TGATTCTGGACATATTTGCGCAACACGCTGCAACGCGGGAGGGACAGTTA
CAGGTGGAGCTAGCGCTGTACCAATACCGATTGCCACGCCTGACTCGCAT
GTGGACCCATCTGGAACGGCAGTCTGGTGCAGGCGGGGTGGGGTTGCGTG
GACCAGGTGAGACTCAGCTCGAAGTGGACAGGCGGATAATCAACTCAAAA
GTGAGCAAACTGAAAAAAGATCTGGAGCTGGTACGCGCTCATAGAAGCCG
TGTGAGACAAGCTCGAAAGAGAAACATTGGATTACCCGTAGTGGCATTAA
TTGGGTACACAAACGGGGGGAAAAGCTCATTGCTCAATGCCCTTAGCGGG
GCAGATGCAGTCGCGGCGAATGCGCTGTTTGCAACTTTGGATCCAACAAC
AAGGCGTGCGAGCGTGGCTGGGCTGAAACTAAGCCCTGAGATTCTGGTAA
CTGATACTGTGGGATTTGTGCAGAACTTGCCTACGCAGCTAGTGGCCGCG
TTTCGAGCTACTTTGGAGGAAGTGGTAGATGCGGATATGCTTTTGCACGT
GGTGGATGGATCGGATGACCAGGAGGTTGTGCAGCGGAAGATGAAGGCAG
TTGAAAGAGTGGTGGAGGAGATTGGGGCTGGCGGGAAGCCGACAGTGGTT
GTGTTGAATAAGGCGGATTTAGTAGCGGAGGACAAGGTGGAGCGTGTGAA
GGGAGCAATCGAGAGGGAAGGCGAATTCGAATGCGTGACGGTGAGTGCGA
AGACGGGTGAGGGCATGGACGAGATGGGAATGGTGATCGACGAGGTTCTA
CGTGACACCATGCGCAGCGTGGAAGTGGTGATCCCGTACAGCCGCGGTGA
CCTGACAACGGCAATCTACGTGCAGGGCAGCGTGGAGGCGGAGGAGTTTG
TGAATGATGGTACGATGATCCAGGCTCGCGTGCCCTTGGCGCTAGGCAAC
CGACTGAAAAAATTTATGATAGACGACTGCGAGGGCGACGATACGGACGA
GGAGGCGATGTGGGTGGACCTGGCCAAGAAGCGTCACTCGCCGCGGGCGG
TGAGCGTGCCTGAAGCGGCGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_41:785340..786812-

>Gvermi3254.t1 ID=Gvermi3254.t1|Name=Gvermi3254.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1473bp|location=Sequence derived from alignment at ScGOVlb_41:785340..786812- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGACCGCGAAGCCCTCGGAAACTTCGGAAGAACGGTATTCCCTTCG
AGTTCGTCGCGAACAAGACCGCGAACTTTGCGTCCTGGTCGGTGTAGATG
CAACAGACAAGAACCGGCACACTCGTATCTTTTCTCTCGAAGATTCATTG
CAAGAGCTTACTCGCCTAGCCGAGACAGCAGGTATGCGGGTTGTTTCGGT
AGTGACGCAGCAATTGCCCGTCCCCTACGCCTCCACCTACATTGGTACTG
GAAAGCTTGCTGAAGTGCGAAGGGAGATGGAAAGTTCGGGCTGTCTCACT
TGTATATTTGACGTGGAGCTGTCACCAGCCCAACAGCGCACATTGGAACA
TGAATTTGGGGGTGAAGAACGCGGAATCAAAGTGCTTGACCGTACAGCCC
TGATTCTGGACATATTTGCGCAACACGCTGCAACGCGGGAGGGACAGTTA
CAGGTGGAGCTAGCGCTGTACCAATACCGATTGCCACGCCTGACTCGCAT
GTGGACCCATCTGGAACGGCAGTCTGGTGCAGGCGGGGTGGGGTTGCGTG
GACCAGGTGAGACTCAGCTCGAAGTGGACAGGCGGATAATCAACTCAAAA
GTGAGCAAACTGAAAAAAGATCTGGAGCTGGTACGCGCTCATAGAAGCCG
TGTGAGACAAGCTCGAAAGAGAAACATTGGATTACCCGTAGTGGCATTAA
TTGGGTACACAAACGGGGGGAAAAGCTCATTGCTCAATGCCCTTAGCGGG
GCAGATGCAGTCGCGGCGAATGCGCTGTTTGCAACTTTGGATCCAACAAC
AAGGCGTGCGAGCGTGGCTGGGCTGAAACTAAGCCCTGAGATTCTGGTAA
CTGATACTGTGGGATTTGTGCAGAACTTGCCTACGCAGCTAGTGGCCGCG
TTTCGAGCTACTTTGGAGGAAGTGGTAGATGCGGATATGCTTTTGCACGT
GGTGGATGGATCGGATGACCAGGAGGTTGTGCAGCGGAAGATGAAGGCAG
TTGAAAGAGTGGTGGAGGAGATTGGGGCTGGCGGGAAGCCGACAGTGGTT
GTGTTGAATAAGGCGGATTTAGTAGCGGAGGACAAGGTGGAGCGTGTGAA
GGGAGCAATCGAGAGGGAAGGCGAATTCGAATGCGTGACGGTGAGTGCGA
AGACGGGTGAGGGCATGGACGAGATGGGAATGGTGATCGACGAGGTTCTA
CGTGACACCATGCGCAGCGTGGAAGTGGTGATCCCGTACAGCCGCGGTGA
CCTGACAACGGCAATCTACGTGCAGGGCAGCGTGGAGGCGGAGGAGTTTG
TGAATGATGGTACGATGATCCAGGCTCGCGTGCCCTTGGCGCTAGGCAAC
CGACTGAAAAAATTTATGATAGACGACTGCGAGGGCGACGATACGGACGA
GGAGGCGATGTGGGTGGACCTGGCCAAGAAGCGTCACTCGCCGCGGGCGG
TGAGCGTGCCTGAAGCGGCGTGA
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