Gvermi3250.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3250.t1
Unique NameGvermi3250.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length204
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:774032..774643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMO150CT
PFAMsAhpC-TSA_2
Max annot lvl2759|Eukaryota
KEGG rclassRC00671
KEGG koko:K10878,ko:K15717
KEGG ReactionR09506
KEGG Pathwayko00590,ko01100,ko04113,map00590,map01100,map04113
GOsGO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009636,GO:0009987,GO:0016209,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748
Evalue5.29e-25
EggNOG OGsKOG4498@1|root,KOG4498@2759|Eukaryota
EC1.11.1.20
Descriptionprostaglandin-F synthase activity
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3250Gvermi3250Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 774032..774643 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3250.t1.stop1Gvermi3250.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 774032..774034 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3250.t1.CDS1Gvermi3250.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 774032..774643 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3250.t1.exon1Gvermi3250.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 774032..774643 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3250.t1.start1Gvermi3250.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 774641..774643 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3250.t1Gvermi3250.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 774032..774643 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3250.t1 ID=Gvermi3250.t1|Name=Gvermi3250.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=204bp
MPRASLQLPTHTTFASLFSSPEQAVVLTPQGSRASLIDHVSTHNADGQVV
LLGWLRHFGCTLCKKQANDWKSILPQLREQGPVNVVLVGNGPAAHAREFQ
DEIGWDGDLFTDPDRRTYRALNMNAGLLTTFNLSALKKTISSFGDGNNQT
WSRIPTDAFQQGGALLVDNQGMVRMFHVDDFAGDHVAKERIINEVNKVAL
ERI*
back to top

spliced messenger RNA

>Gvermi3250.t1 ID=Gvermi3250.t1|Name=Gvermi3250.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=612bp|location=Sequence derived from alignment at ScGOVlb_41:774032..774643- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACGAGCTTCACTTCAACTTCCCACTCACACCACATTCGCTTCTCT
GTTTTCGTCCCCGGAGCAGGCCGTCGTCCTCACCCCTCAGGGATCTCGAG
CGTCCCTCATAGACCACGTGAGCACTCACAACGCAGATGGCCAAGTTGTT
CTTTTGGGCTGGTTGCGCCACTTCGGTTGTACACTCTGTAAGAAGCAGGC
GAACGACTGGAAGTCGATTTTACCTCAACTTCGAGAGCAAGGGCCGGTAA
ACGTAGTGCTTGTAGGCAACGGACCTGCGGCGCACGCAAGAGAATTTCAG
GACGAGATCGGATGGGACGGTGACCTATTCACAGACCCGGATAGGCGCAC
ATATCGTGCGTTAAATATGAACGCGGGGCTCTTGACAACATTCAATTTAT
CTGCTTTGAAGAAAACAATAAGCAGTTTTGGGGATGGAAACAACCAAACC
TGGTCGAGGATACCCACTGATGCATTTCAACAGGGAGGAGCTCTTCTGGT
TGACAATCAAGGTATGGTGCGCATGTTCCATGTGGACGATTTCGCTGGAG
ATCATGTCGCAAAGGAGCGAATAATAAACGAAGTGAACAAAGTAGCGCTG
GAGAGAATTTAG
back to top

protein sequence of Gvermi3250.t1

>Gvermi3250.t1 ID=Gvermi3250.t1|Name=Gvermi3250.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=204bp
MPRASLQLPTHTTFASLFSSPEQAVVLTPQGSRASLIDHVSTHNADGQVV
LLGWLRHFGCTLCKKQANDWKSILPQLREQGPVNVVLVGNGPAAHAREFQ
DEIGWDGDLFTDPDRRTYRALNMNAGLLTTFNLSALKKTISSFGDGNNQT
WSRIPTDAFQQGGALLVDNQGMVRMFHVDDFAGDHVAKERIINEVNKVAL
ERI*
back to top

mRNA from alignment at ScGOVlb_41:774032..774643-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3250.t1 ID=Gvermi3250.t1|Name=Gvermi3250.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=612bp|location=Sequence derived from alignment at ScGOVlb_41:774032..774643- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCACGAGCTTCACTTCAACTTCCCACTCACACCACATTCGCTTCTCT
GTTTTCGTCCCCGGAGCAGGCCGTCGTCCTCACCCCTCAGGGATCTCGAG
CGTCCCTCATAGACCACGTGAGCACTCACAACGCAGATGGCCAAGTTGTT
CTTTTGGGCTGGTTGCGCCACTTCGGTTGTACACTCTGTAAGAAGCAGGC
GAACGACTGGAAGTCGATTTTACCTCAACTTCGAGAGCAAGGGCCGGTAA
ACGTAGTGCTTGTAGGCAACGGACCTGCGGCGCACGCAAGAGAATTTCAG
GACGAGATCGGATGGGACGGTGACCTATTCACAGACCCGGATAGGCGCAC
ATATCGTGCGTTAAATATGAACGCGGGGCTCTTGACAACATTCAATTTAT
CTGCTTTGAAGAAAACAATAAGCAGTTTTGGGGATGGAAACAACCAAACC
TGGTCGAGGATACCCACTGATGCATTTCAACAGGGAGGAGCTCTTCTGGT
TGACAATCAAGGTATGGTGCGCATGTTCCATGTGGACGATTTCGCTGGAG
ATCATGTCGCAAAGGAGCGAATAATAAACGAAGTGAACAAAGTAGCGCTG
GAGAGAATTTAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_41:774032..774643-

>Gvermi3250.t1 ID=Gvermi3250.t1|Name=Gvermi3250.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=612bp|location=Sequence derived from alignment at ScGOVlb_41:774032..774643- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCACGAGCTTCACTTCAACTTCCCACTCACACCACATTCGCTTCTCT
GTTTTCGTCCCCGGAGCAGGCCGTCGTCCTCACCCCTCAGGGATCTCGAG
CGTCCCTCATAGACCACGTGAGCACTCACAACGCAGATGGCCAAGTTGTT
CTTTTGGGCTGGTTGCGCCACTTCGGTTGTACACTCTGTAAGAAGCAGGC
GAACGACTGGAAGTCGATTTTACCTCAACTTCGAGAGCAAGGGCCGGTAA
ACGTAGTGCTTGTAGGCAACGGACCTGCGGCGCACGCAAGAGAATTTCAG
GACGAGATCGGATGGGACGGTGACCTATTCACAGACCCGGATAGGCGCAC
ATATCGTGCGTTAAATATGAACGCGGGGCTCTTGACAACATTCAATTTAT
CTGCTTTGAAGAAAACAATAAGCAGTTTTGGGGATGGAAACAACCAAACC
TGGTCGAGGATACCCACTGATGCATTTCAACAGGGAGGAGCTCTTCTGGT
TGACAATCAAGGTATGGTGCGCATGTTCCATGTGGACGATTTCGCTGGAG
ATCATGTCGCAAAGGAGCGAATAATAAACGAAGTGAACAAAGTAGCGCTG
GAGAGAATTTAG
back to top