Gvermi3244.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi3244.t1
Unique Name	Gvermi3244.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	756

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_41	contig	ScGOVlb_41:740102..742369 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5693.XP_812334.1
PFAMs	Auxin_resp,Bromodomain,DNMT1-RFD,DUF3591,WSD
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03125
KEGG Pathway	ko03022,map03022
Evalue	1.75e-08
EggNOG OGs	COG5179@1\|root,KOG0008@2759\|Eukaryota,3XYFF@5653\|Kinetoplastida
Description	bromo domain
COG category	K
BRITE	ko00000,ko00001,ko01001,ko03021,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi3244	Gvermi3244	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_41 740102..742369 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3244.t1.start1	Gvermi3244.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_41 740102..740104 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3244.t1.CDS1	Gvermi3244.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_41 740102..742369 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3244.t1.exon1	Gvermi3244.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_41 740102..742369 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3244.t1.stop1	Gvermi3244.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_41 742367..742369 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3244.t1	Gvermi3244.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_41 740102..742369 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_41:740102..742369+
coding sequence from alignment at ScGOVlb_41:740102..742369+

mRNA sequence

>Gvermi3244.t1 ID=Gvermi3244.t1|Name=Gvermi3244.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=756bp
MSSSSQTPIQTPAQIFAQLMATGAIDRFRKSLEKLIQPLSQTRYQSISHA
TDSFLLELPSVEELISNPKKLLQDAKDATMTSVREDVIRDVQQTAVSQAA
VELRRALRQAFDIITSPPKEQPKPTQQPSQAAQTQALPTSIEPSEIEKAS
PPQTPKVDSSELETTSQLPNQTSTPTCEKSAAPDRNAQQSTEGSQKTGCD
NGTNASELPTSDNSPPKNNAAPPIQTIPTDLFQTAHNILELKAKEKEAGT
ALAKKENKKDQSAQVQDATEEHLSPKRTEPQHLPSNDQASSQSRQGLQEQ
PLETDDSPNLALGERKQEKEKAVVDEKAPLHCVEGISSETPQAPTAEDVD
NAGDISEMREKAPDVANVANGPRIVAKQSDLISIARDVETPRTLRKRGKR
RKSSEQPATDDVGTRKRRRKQTHEDRAVEVEVIATSDRKRSRKDIVPAQS
KRRRKAHPNTNVEAKKASGGAIVKRTGRKRGKCSGPVLNPAVAALIDPRN
PNRPRRYRVSKPSCIPEDFDAQVQVMQILESLLEKDYASSFAEPVDLGEE
GQSSYLREITNPMDLGTIVKRLRESTPELGYFNTVTELLADVELVWWNCA
QFNGCLDPIVEDMNLCKEELSSNLERLMNGFETAITGQAHSPIRERSDGM
RNKTRVDRSNDQYAVSKTTGKEHEKKDSQVTGDLNDGRLQGKLGAIFRYI
EDGNGKGRKEWSSCKITKYDSVSRSYTILWEDKTETTSATIGAGCKFNIH
RFKTD*

spliced messenger RNA

>Gvermi3244.t1 ID=Gvermi3244.t1|Name=Gvermi3244.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2268bp|location=Sequence derived from alignment at ScGOVlb_41:740102..742369+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCTTCATCGCAAACCCCCATCCAGACTCCCGCCCAAATCTTCGC
GCAATTGATGGCAACGGGTGCAATAGACCGTTTCCGCAAATCCCTAGAAA
AGCTCATTCAACCGCTTTCACAAACACGTTATCAATCCATCTCACATGCA
ACCGACTCTTTTCTTCTCGAATTGCCTTCAGTTGAAGAACTTATTTCAAA
CCCAAAGAAGCTTTTGCAAGACGCTAAAGACGCAACAATGACATCTGTCA
GAGAAGATGTTATTAGAGATGTTCAGCAAACCGCGGTGTCTCAAGCTGCC
GTTGAGCTGCGACGGGCACTTCGGCAAGCCTTTGATATTATTACCAGCCC
GCCGAAAGAGCAGCCTAAACCAACACAACAACCCTCGCAAGCAGCACAAA
CGCAAGCACTGCCAACAAGCATCGAGCCGTCCGAGATAGAGAAAGCATCG
CCTCCACAAACGCCAAAGGTCGACAGCAGCGAACTGGAAACTACGTCGCA
GCTTCCCAACCAAACATCAACACCAACGTGCGAAAAATCTGCAGCACCCG
ATCGTAACGCCCAACAGTCAACGGAAGGTTCTCAAAAAACAGGGTGCGAT
AACGGAACCAACGCCTCCGAGCTCCCCACAAGTGACAATTCTCCACCGAA
AAACAATGCCGCACCACCCATACAAACCATTCCGACGGACTTATTCCAAA
CGGCCCATAACATTCTCGAATTGAAGGCCAAAGAAAAAGAGGCTGGTACT
GCCCTTGCGAAGAAAGAGAACAAGAAAGATCAGTCTGCCCAAGTCCAGGA
TGCGACAGAGGAGCATTTGTCTCCCAAGCGGACTGAACCTCAACATCTAC
CATCGAATGATCAAGCGTCATCACAATCTCGACAAGGCCTTCAAGAGCAA
CCATTAGAAACAGATGATTCCCCCAACTTGGCATTGGGAGAGCGAAAACA
AGAAAAAGAAAAGGCAGTGGTGGATGAAAAAGCGCCCCTTCATTGCGTCG
AAGGAATCTCTTCGGAAACACCTCAGGCTCCCACCGCAGAAGATGTTGAT
AACGCAGGTGACATCTCTGAGATGCGAGAGAAGGCACCAGATGTTGCGAA
TGTCGCGAATGGCCCGAGGATTGTAGCCAAGCAAAGTGATTTGATATCAA
TAGCCCGTGATGTCGAAACGCCTAGAACTCTTCGGAAACGCGGAAAACGC
CGTAAATCATCGGAACAGCCAGCAACGGATGATGTTGGAACCCGCAAGCG
CCGAAGAAAACAAACGCATGAAGATAGGGCTGTCGAAGTTGAAGTCATTG
CGACAAGCGACAGAAAACGGAGCAGAAAAGATATTGTTCCTGCGCAGAGC
AAGAGAAGGCGCAAGGCTCACCCAAATACTAATGTGGAAGCTAAAAAGGC
CAGTGGAGGTGCAATAGTGAAACGCACTGGCAGAAAGAGAGGAAAATGCT
CTGGACCAGTGCTGAATCCTGCAGTGGCGGCCTTGATAGATCCTCGTAAT
CCAAATCGTCCAAGAAGGTATAGGGTATCGAAGCCATCATGCATTCCGGA
AGACTTTGACGCCCAAGTTCAAGTCATGCAGATCCTGGAGAGTTTGCTTG
AGAAGGACTACGCTTCTTCGTTTGCGGAACCCGTAGATCTTGGTGAAGAG
GGACAGTCCTCGTACTTGCGAGAGATCACGAACCCTATGGATCTCGGCAC
TATTGTTAAGCGCTTGAGAGAAAGTACTCCAGAGCTGGGATACTTCAACA
CGGTCACGGAACTGCTGGCAGACGTTGAACTTGTGTGGTGGAATTGTGCT
CAATTCAACGGATGCCTTGATCCAATCGTCGAAGACATGAATCTTTGCAA
GGAAGAACTGTCTTCGAATCTTGAGCGGTTGATGAACGGCTTTGAAACAG
CAATAACGGGACAAGCGCACTCGCCGATTCGTGAAAGGAGTGATGGGATG
CGAAATAAGACGCGTGTCGATAGATCAAATGATCAATATGCCGTAAGCAA
GACCACTGGGAAAGAGCATGAGAAGAAAGACAGTCAAGTTACTGGAGATT
TAAACGATGGACGGTTGCAAGGCAAACTAGGGGCGATCTTTAGATATATT
GAGGATGGGAACGGCAAGGGGCGAAAGGAATGGTCGTCGTGTAAGATCAC
GAAGTATGACTCGGTAAGCAGAAGTTATACGATTCTCTGGGAGGACAAGA
CAGAGACGACTAGCGCCACCATTGGTGCTGGCTGCAAGTTCAATATACAT
AGATTTAAGACTGATTAA

protein sequence of Gvermi3244.t1

>Gvermi3244.t1 ID=Gvermi3244.t1|Name=Gvermi3244.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=756bp
MSSSSQTPIQTPAQIFAQLMATGAIDRFRKSLEKLIQPLSQTRYQSISHA
TDSFLLELPSVEELISNPKKLLQDAKDATMTSVREDVIRDVQQTAVSQAA
VELRRALRQAFDIITSPPKEQPKPTQQPSQAAQTQALPTSIEPSEIEKAS
PPQTPKVDSSELETTSQLPNQTSTPTCEKSAAPDRNAQQSTEGSQKTGCD
NGTNASELPTSDNSPPKNNAAPPIQTIPTDLFQTAHNILELKAKEKEAGT
ALAKKENKKDQSAQVQDATEEHLSPKRTEPQHLPSNDQASSQSRQGLQEQ
PLETDDSPNLALGERKQEKEKAVVDEKAPLHCVEGISSETPQAPTAEDVD
NAGDISEMREKAPDVANVANGPRIVAKQSDLISIARDVETPRTLRKRGKR
RKSSEQPATDDVGTRKRRRKQTHEDRAVEVEVIATSDRKRSRKDIVPAQS
KRRRKAHPNTNVEAKKASGGAIVKRTGRKRGKCSGPVLNPAVAALIDPRN
PNRPRRYRVSKPSCIPEDFDAQVQVMQILESLLEKDYASSFAEPVDLGEE
GQSSYLREITNPMDLGTIVKRLRESTPELGYFNTVTELLADVELVWWNCA
QFNGCLDPIVEDMNLCKEELSSNLERLMNGFETAITGQAHSPIRERSDGM
RNKTRVDRSNDQYAVSKTTGKEHEKKDSQVTGDLNDGRLQGKLGAIFRYI
EDGNGKGRKEWSSCKITKYDSVSRSYTILWEDKTETTSATIGAGCKFNIH
RFKTD*

mRNA from alignment at ScGOVlb_41:740102..742369+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi3244.t1 ID=Gvermi3244.t1|Name=Gvermi3244.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2268bp|location=Sequence derived from alignment at ScGOVlb_41:740102..742369+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGTCTTCATCGCAAACCCCCATCCAGACTCCCGCCCAAATCTTCGC
GCAATTGATGGCAACGGGTGCAATAGACCGTTTCCGCAAATCCCTAGAAA
AGCTCATTCAACCGCTTTCACAAACACGTTATCAATCCATCTCACATGCA
ACCGACTCTTTTCTTCTCGAATTGCCTTCAGTTGAAGAACTTATTTCAAA
CCCAAAGAAGCTTTTGCAAGACGCTAAAGACGCAACAATGACATCTGTCA
GAGAAGATGTTATTAGAGATGTTCAGCAAACCGCGGTGTCTCAAGCTGCC
GTTGAGCTGCGACGGGCACTTCGGCAAGCCTTTGATATTATTACCAGCCC
GCCGAAAGAGCAGCCTAAACCAACACAACAACCCTCGCAAGCAGCACAAA
CGCAAGCACTGCCAACAAGCATCGAGCCGTCCGAGATAGAGAAAGCATCG
CCTCCACAAACGCCAAAGGTCGACAGCAGCGAACTGGAAACTACGTCGCA
GCTTCCCAACCAAACATCAACACCAACGTGCGAAAAATCTGCAGCACCCG
ATCGTAACGCCCAACAGTCAACGGAAGGTTCTCAAAAAACAGGGTGCGAT
AACGGAACCAACGCCTCCGAGCTCCCCACAAGTGACAATTCTCCACCGAA
AAACAATGCCGCACCACCCATACAAACCATTCCGACGGACTTATTCCAAA
CGGCCCATAACATTCTCGAATTGAAGGCCAAAGAAAAAGAGGCTGGTACT
GCCCTTGCGAAGAAAGAGAACAAGAAAGATCAGTCTGCCCAAGTCCAGGA
TGCGACAGAGGAGCATTTGTCTCCCAAGCGGACTGAACCTCAACATCTAC
CATCGAATGATCAAGCGTCATCACAATCTCGACAAGGCCTTCAAGAGCAA
CCATTAGAAACAGATGATTCCCCCAACTTGGCATTGGGAGAGCGAAAACA
AGAAAAAGAAAAGGCAGTGGTGGATGAAAAAGCGCCCCTTCATTGCGTCG
AAGGAATCTCTTCGGAAACACCTCAGGCTCCCACCGCAGAAGATGTTGAT
AACGCAGGTGACATCTCTGAGATGCGAGAGAAGGCACCAGATGTTGCGAA
TGTCGCGAATGGCCCGAGGATTGTAGCCAAGCAAAGTGATTTGATATCAA
TAGCCCGTGATGTCGAAACGCCTAGAACTCTTCGGAAACGCGGAAAACGC
CGTAAATCATCGGAACAGCCAGCAACGGATGATGTTGGAACCCGCAAGCG
CCGAAGAAAACAAACGCATGAAGATAGGGCTGTCGAAGTTGAAGTCATTG
CGACAAGCGACAGAAAACGGAGCAGAAAAGATATTGTTCCTGCGCAGAGC
AAGAGAAGGCGCAAGGCTCACCCAAATACTAATGTGGAAGCTAAAAAGGC
CAGTGGAGGTGCAATAGTGAAACGCACTGGCAGAAAGAGAGGAAAATGCT
CTGGACCAGTGCTGAATCCTGCAGTGGCGGCCTTGATAGATCCTCGTAAT
CCAAATCGTCCAAGAAGGTATAGGGTATCGAAGCCATCATGCATTCCGGA
AGACTTTGACGCCCAAGTTCAAGTCATGCAGATCCTGGAGAGTTTGCTTG
AGAAGGACTACGCTTCTTCGTTTGCGGAACCCGTAGATCTTGGTGAAGAG
GGACAGTCCTCGTACTTGCGAGAGATCACGAACCCTATGGATCTCGGCAC
TATTGTTAAGCGCTTGAGAGAAAGTACTCCAGAGCTGGGATACTTCAACA
CGGTCACGGAACTGCTGGCAGACGTTGAACTTGTGTGGTGGAATTGTGCT
CAATTCAACGGATGCCTTGATCCAATCGTCGAAGACATGAATCTTTGCAA
GGAAGAACTGTCTTCGAATCTTGAGCGGTTGATGAACGGCTTTGAAACAG
CAATAACGGGACAAGCGCACTCGCCGATTCGTGAAAGGAGTGATGGGATG
CGAAATAAGACGCGTGTCGATAGATCAAATGATCAATATGCCGTAAGCAA
GACCACTGGGAAAGAGCATGAGAAGAAAGACAGTCAAGTTACTGGAGATT
TAAACGATGGACGGTTGCAAGGCAAACTAGGGGCGATCTTTAGATATATT
GAGGATGGGAACGGCAAGGGGCGAAAGGAATGGTCGTCGTGTAAGATCAC
GAAGTATGACTCGGTAAGCAGAAGTTATACGATTCTCTGGGAGGACAAGA
CAGAGACGACTAGCGCCACCATTGGTGCTGGCTGCAAGTTCAATATACAT
AGATTTAAGACTGATTAA

Coding sequence (CDS) from alignment at ScGOVlb_41:740102..742369+

>Gvermi3244.t1 ID=Gvermi3244.t1|Name=Gvermi3244.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2268bp|location=Sequence derived from alignment at ScGOVlb_41:740102..742369+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGTCTTCATCGCAAACCCCCATCCAGACTCCCGCCCAAATCTTCGC
GCAATTGATGGCAACGGGTGCAATAGACCGTTTCCGCAAATCCCTAGAAA
AGCTCATTCAACCGCTTTCACAAACACGTTATCAATCCATCTCACATGCA
ACCGACTCTTTTCTTCTCGAATTGCCTTCAGTTGAAGAACTTATTTCAAA
CCCAAAGAAGCTTTTGCAAGACGCTAAAGACGCAACAATGACATCTGTCA
GAGAAGATGTTATTAGAGATGTTCAGCAAACCGCGGTGTCTCAAGCTGCC
GTTGAGCTGCGACGGGCACTTCGGCAAGCCTTTGATATTATTACCAGCCC
GCCGAAAGAGCAGCCTAAACCAACACAACAACCCTCGCAAGCAGCACAAA
CGCAAGCACTGCCAACAAGCATCGAGCCGTCCGAGATAGAGAAAGCATCG
CCTCCACAAACGCCAAAGGTCGACAGCAGCGAACTGGAAACTACGTCGCA
GCTTCCCAACCAAACATCAACACCAACGTGCGAAAAATCTGCAGCACCCG
ATCGTAACGCCCAACAGTCAACGGAAGGTTCTCAAAAAACAGGGTGCGAT
AACGGAACCAACGCCTCCGAGCTCCCCACAAGTGACAATTCTCCACCGAA
AAACAATGCCGCACCACCCATACAAACCATTCCGACGGACTTATTCCAAA
CGGCCCATAACATTCTCGAATTGAAGGCCAAAGAAAAAGAGGCTGGTACT
GCCCTTGCGAAGAAAGAGAACAAGAAAGATCAGTCTGCCCAAGTCCAGGA
TGCGACAGAGGAGCATTTGTCTCCCAAGCGGACTGAACCTCAACATCTAC
CATCGAATGATCAAGCGTCATCACAATCTCGACAAGGCCTTCAAGAGCAA
CCATTAGAAACAGATGATTCCCCCAACTTGGCATTGGGAGAGCGAAAACA
AGAAAAAGAAAAGGCAGTGGTGGATGAAAAAGCGCCCCTTCATTGCGTCG
AAGGAATCTCTTCGGAAACACCTCAGGCTCCCACCGCAGAAGATGTTGAT
AACGCAGGTGACATCTCTGAGATGCGAGAGAAGGCACCAGATGTTGCGAA
TGTCGCGAATGGCCCGAGGATTGTAGCCAAGCAAAGTGATTTGATATCAA
TAGCCCGTGATGTCGAAACGCCTAGAACTCTTCGGAAACGCGGAAAACGC
CGTAAATCATCGGAACAGCCAGCAACGGATGATGTTGGAACCCGCAAGCG
CCGAAGAAAACAAACGCATGAAGATAGGGCTGTCGAAGTTGAAGTCATTG
CGACAAGCGACAGAAAACGGAGCAGAAAAGATATTGTTCCTGCGCAGAGC
AAGAGAAGGCGCAAGGCTCACCCAAATACTAATGTGGAAGCTAAAAAGGC
CAGTGGAGGTGCAATAGTGAAACGCACTGGCAGAAAGAGAGGAAAATGCT
CTGGACCAGTGCTGAATCCTGCAGTGGCGGCCTTGATAGATCCTCGTAAT
CCAAATCGTCCAAGAAGGTATAGGGTATCGAAGCCATCATGCATTCCGGA
AGACTTTGACGCCCAAGTTCAAGTCATGCAGATCCTGGAGAGTTTGCTTG
AGAAGGACTACGCTTCTTCGTTTGCGGAACCCGTAGATCTTGGTGAAGAG
GGACAGTCCTCGTACTTGCGAGAGATCACGAACCCTATGGATCTCGGCAC
TATTGTTAAGCGCTTGAGAGAAAGTACTCCAGAGCTGGGATACTTCAACA
CGGTCACGGAACTGCTGGCAGACGTTGAACTTGTGTGGTGGAATTGTGCT
CAATTCAACGGATGCCTTGATCCAATCGTCGAAGACATGAATCTTTGCAA
GGAAGAACTGTCTTCGAATCTTGAGCGGTTGATGAACGGCTTTGAAACAG
CAATAACGGGACAAGCGCACTCGCCGATTCGTGAAAGGAGTGATGGGATG
CGAAATAAGACGCGTGTCGATAGATCAAATGATCAATATGCCGTAAGCAA
GACCACTGGGAAAGAGCATGAGAAGAAAGACAGTCAAGTTACTGGAGATT
TAAACGATGGACGGTTGCAAGGCAAACTAGGGGCGATCTTTAGATATATT
GAGGATGGGAACGGCAAGGGGCGAAAGGAATGGTCGTCGTGTAAGATCAC
GAAGTATGACTCGGTAAGCAGAAGTTATACGATTCTCTGGGAGGACAAGA
CAGAGACGACTAGCGCCACCATTGGTGCTGGCTGCAAGTTCAATATACAT
AGATTTAAGACTGATTAA