Gvermi3239.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3239.t2
Unique NameGvermi3239.t2
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length498
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:723489..727374 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3239Gvermi3239Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 723489..727374 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3239.t2Gvermi3239.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 723489..727374 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3239.t2.stop1Gvermi3239.t2.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 723489..723491 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3239.t2.CDS1Gvermi3239.t2.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 723489..723495 -
Gvermi3239.t2.CDS2Gvermi3239.t2.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 723605..724404 -
Gvermi3239.t2.CDS3Gvermi3239.t2.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 726688..727374 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3239.t2.exon1Gvermi3239.t2.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 723489..723495 -
Gvermi3239.t2.exon2Gvermi3239.t2.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 723605..724404 -
Gvermi3239.t2.exon3Gvermi3239.t2.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 726688..727374 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3239.t2.intron1Gvermi3239.t2.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 723496..723604 -
Gvermi3239.t2.intron2Gvermi3239.t2.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 724405..726687 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3239.t2.start1Gvermi3239.t2.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 727372..727374 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3239.t2 ID=Gvermi3239.t2|Name=Gvermi3239.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=498bp
MPYMCGIVGCDCYLNGGVSSHNYHLPIPRIAQAAAMVQPASQSTMSAPLP
TAPPFYGAPSMPYAFASPFSYSAAPPGAFHNMVQVNVMEQMYPHHHAAPN
ADASVAVHNVGSAQAAANSSNNGVNSQPKSSAAPLMNAPSGNSLAPGAAP
APQSNVNCAVPRNGYDMYACSQLNVGSQPPNGVMYGGFGAHGQVGVDASM
MLQANANGSHGSNPQQMWAEVAHSNNPGISHHAAHHPPVAHARSAAARIA
PNPSAALAPGAPPIHTGGVEKRRAGKYTHPYGGMRQFAEDRAAHSGWDND
CLAISDDDQRREARSHLAEKISEMYKEEFVRVNKAQGKGRPKANNISAAK
KTVRMIAERILLSLEARAQAALHKRLMDIRQESEKELRKLRHLHKLGNEN
PKLSYDEIRAIARSRLSQHSDAPSSPIPLMGNDGTEATDMESAEADAEIE
AMKQAIIEMRADEVAKGYKPKLLNERWVERMTQACRRLVHETYSRQT*
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spliced messenger RNA

>Gvermi3239.t2 ID=Gvermi3239.t2|Name=Gvermi3239.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1494bp|location=Sequence derived from alignment at ScGOVlb_41:723489..727374- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCATACATGTGCGGAATCGTCGGCTGTGACTGCTATCTCAACGGCGG
TGTGTCCTCGCACAACTATCACTTGCCCATACCGCGCATTGCGCAAGCCG
CTGCCATGGTGCAGCCTGCCAGCCAGTCCACCATGTCGGCGCCGTTACCG
ACCGCCCCACCGTTTTACGGCGCCCCGTCTATGCCGTATGCGTTTGCTTC
GCCGTTCTCGTACTCGGCGGCGCCACCCGGCGCCTTCCACAACATGGTGC
AGGTCAACGTCATGGAGCAAATGTACCCTCATCACCACGCGGCGCCAAAC
GCCGACGCCTCCGTGGCGGTGCACAATGTGGGCAGCGCGCAGGCAGCGGC
GAACAGCAGTAACAATGGCGTCAACTCACAGCCGAAAAGTTCTGCGGCGC
CTTTAATGAACGCGCCCAGCGGCAACAGTCTGGCGCCAGGCGCCGCCCCT
GCGCCGCAGTCAAACGTCAACTGTGCCGTGCCGCGCAACGGGTACGACAT
GTATGCTTGTTCACAGCTCAATGTGGGCTCGCAGCCACCCAACGGGGTCA
TGTACGGCGGCTTTGGTGCGCACGGGCAGGTGGGCGTCGACGCCTCGATG
ATGCTGCAAGCGAATGCAAACGGGTCTCATGGTTCGAATCCGCAGCAAAT
GTGGGCTGAGGTGGCTCACTCCAACAACCCCGGGATCTCTCACCACGCTG
CACACCACCCCCCCGTCGCCCACGCCCGTTCCGCCGCCGCGCGCATCGCC
CCCAACCCCTCCGCCGCGCTGGCGCCCGGCGCCCCGCCCATCCACACCGG
CGGCGTCGAGAAGCGCCGCGCCGGCAAGTACACCCACCCGTACGGCGGCA
TGCGCCAGTTTGCTGAGGATCGTGCCGCCCACTCTGGGTGGGACAACGAC
TGCTTGGCCATCAGCGACGACGACCAGCGGCGCGAGGCGCGCTCGCACCT
GGCTGAGAAAATCTCCGAGATGTACAAGGAGGAGTTTGTGCGCGTGAACA
AGGCGCAGGGCAAGGGCAGACCCAAGGCCAACAACATCTCGGCCGCCAAG
AAGACGGTGCGCATGATCGCCGAGCGCATCCTGCTGTCGCTGGAGGCGCG
CGCGCAGGCGGCGCTGCACAAGAGGCTCATGGACATTCGCCAGGAGAGCG
AGAAGGAGCTGCGGAAACTGCGCCACCTGCACAAGCTTGGCAACGAAAAC
CCCAAGCTGAGCTACGACGAAATCCGCGCCATTGCGCGCTCGCGCCTGTC
GCAGCACTCGGACGCGCCGTCGTCGCCTATACCGCTCATGGGCAACGACG
GCACGGAAGCGACCGACATGGAGTCTGCCGAGGCGGACGCCGAGATTGAA
GCTATGAAGCAGGCTATCATCGAAATGCGCGCCGACGAGGTGGCCAAGGG
CTACAAGCCCAAGCTGCTCAACGAGCGCTGGGTGGAACGCATGACGCAGG
CGTGCAGGCGGCTGGTGCACGAGACGTATAGCAGACAGACGTGA
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protein sequence of Gvermi3239.t2

>Gvermi3239.t2 ID=Gvermi3239.t2|Name=Gvermi3239.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=498bp
MPYMCGIVGCDCYLNGGVSSHNYHLPIPRIAQAAAMVQPASQSTMSAPLP
TAPPFYGAPSMPYAFASPFSYSAAPPGAFHNMVQVNVMEQMYPHHHAAPN
ADASVAVHNVGSAQAAANSSNNGVNSQPKSSAAPLMNAPSGNSLAPGAAP
APQSNVNCAVPRNGYDMYACSQLNVGSQPPNGVMYGGFGAHGQVGVDASM
MLQANANGSHGSNPQQMWAEVAHSNNPGISHHAAHHPPVAHARSAAARIA
PNPSAALAPGAPPIHTGGVEKRRAGKYTHPYGGMRQFAEDRAAHSGWDND
CLAISDDDQRREARSHLAEKISEMYKEEFVRVNKAQGKGRPKANNISAAK
KTVRMIAERILLSLEARAQAALHKRLMDIRQESEKELRKLRHLHKLGNEN
PKLSYDEIRAIARSRLSQHSDAPSSPIPLMGNDGTEATDMESAEADAEIE
AMKQAIIEMRADEVAKGYKPKLLNERWVERMTQACRRLVHETYSRQT*
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mRNA from alignment at ScGOVlb_41:723489..727374-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3239.t2 ID=Gvermi3239.t2|Name=Gvermi3239.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=3886bp|location=Sequence derived from alignment at ScGOVlb_41:723489..727374- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCATACATGTGCGGAATCGTCGGCTGTGACTGCTATCTCAACGGCGG
TGTGTCCTCGCACAACTATCACTTGCCCATACCGCGCATTGCGCAAGCCG
CTGCCATGGTGCAGCCTGCCAGCCAGTCCACCATGTCGGCGCCGTTACCG
ACCGCCCCACCGTTTTACGGCGCCCCGTCTATGCCGTATGCGTTTGCTTC
GCCGTTCTCGTACTCGGCGGCGCCACCCGGCGCCTTCCACAACATGGTGC
AGGTCAACGTCATGGAGCAAATGTACCCTCATCACCACGCGGCGCCAAAC
GCCGACGCCTCCGTGGCGGTGCACAATGTGGGCAGCGCGCAGGCAGCGGC
GAACAGCAGTAACAATGGCGTCAACTCACAGCCGAAAAGTTCTGCGGCGC
CTTTAATGAACGCGCCCAGCGGCAACAGTCTGGCGCCAGGCGCCGCCCCT
GCGCCGCAGTCAAACGTCAACTGTGCCGTGCCGCGCAACGGGTACGACAT
GTATGCTTGTTCACAGCTCAATGTGGGCTCGCAGCCACCCAACGGGGTCA
TGTACGGCGGCTTTGGTGCGCACGGGCAGGTGGGCGTCGACGCCTCGATG
ATGCTGCAAGCGAATGCAAACGGGTCTCATGGTTCGAATCCGCAGCAAAT
GTGGGCTGAGGTGGCTCACTCCAACAACCCCGGGATCGTGAACATGTACA
ACCAGAACAACCACCACCATCACCACCACCATCACGCGGGTGAGAATGGT
GGGAAGGCGTTCGACAACGCCGATGAGGGAAAGACGCCGTCGTCGTCCGC
AACGCACCGGAGCAACGCCAGCAACGCGAGCAATGCTAGCAACGCGAGCA
ACGCGAGCAACGCGAATAACGCGAGCAACGCGAGTAACGCGAGCCACGAG
AGCAACGGCAGCAACGGAGAGAATGTGAAGACTGAGGTGGGCGTGTCCAA
TGTGACGGACAGTGGCACCAACGAGAGCTGGCGCGCACGGCTGTCGCGAA
GCAAACGACAAAACGGGCGTGTGCGCGATGGGCACAGGCAGAACGCACTA
GTGGCTACGACGGGAACGTTGGACAAAAATGAGCGCGAAAACGAGCGCGT
GGACAAGGAAAAAATGCAAGGTGGAAGCGCATGCGCCAATGAAGGACACG
CGTCAGCGTCGGGTGAGATGATTCGCGGGAAGAGCGAAGAGGAGACAGTG
ACGGTTATGGGACACGACGGACGCAAGAATAGTAATTGCAGGACGGACAG
ACTGAAGGGAGGCGCAAGCGGGGACAGCGAGGAGGAGGAGGCGATCAAAG
GTATGGATAAGGCGAGCGCGAACGGGCAGCCCGTAGGGCGCAGCGAGAGC
GGCAGCAAGCGACAAGTAGATGAGCTGCAGCAGCGGTACGGCATGGAAGT
GCGCTCGGGGGGCGCACGGGGGGCGAGCAAGCGACGGAGGAGCGGGATGG
TGGAGTCGGCTGTCAGCAAGGCGAATGGGGAGAAGGCAGAGAAGCACAAC
TGGCAAGGGCGCTACATTGCGGCGGGCAACACCGGGGTGCCGGCGATGGT
GCGGGGGGCGGGCGATCTGGGCGGGATACGGGAGATCACGCCGCCGAGCG
ACCGCGAGGAGACGCCCGAGGACGCCGACATGGCGAACGGGAGCGGGAGC
GGGAGTGGGACGGGAGACGGAAGCGGGGACGGGAGTGGGAGTGGGAGTGG
AATTGGAATTGGTAGTAGAAGCGGGAGTAGAAGAGGCAGTGGGAGTGGGA
ATGGAAGCGCGATTGGGAGCGGAAGCGGAAGCGGAAGTGGGGGGCGGGAA
CGGGATGGTGGGACGGAGGCTGAGGCCGAAGCGTCGGCCAAAGCTGAGGA
AGAAGCGCAGGCCGATGCGAAAGAGGGTGAAGGGGGGGACGTGGGGTGGG
AGCGACTCGGCGCGGCGCATTGGCGCGTGGACGCGCAGCTGCGGGTGGTG
CAGTGGGGCGGGAGCCGGCGCGTGCTGGAGGCCGTGGGCGTGTGCGTGCG
CGGGAGCGACGGCGGCGCGCCGCGCGACGCGCTGCTGGCCGAGCAGTACG
CGCGCGCGCGAGCTGCGCGCGTGGACTGGCTGGCGCGCCGCGGTGCCGCG
CGCTTCGCCGTCGTGCTGGCGCCCGCCGCCGCCGGTGCCGTGCACGGGCT
GGCTGTGCAGCTGTCCGCCGCCCACCAGCGCCTCTGAACCGCCGCCGCCG
CCGCCGCCGTCGCCGCCGCCGCCGTCGCCGCTGCCGCCGTCGCCGCTGCC
GCCCCCGCTGCCGCCGCGGCCGCGGCCGCGGCGCGCGCGCCGCCAGCAGC
GCGTGGCCATGTGTGCCACCGCGCGCGTCGTGGATCGCGTGGCCTCCGTG
GCCGCGTGTCCACCCGTGTGCGTGGCGGTGCTTGTTGCGGCAGCAACGCT
CTTGCGGCGGCGCAACGCATGTGCACGCCACTGGTGCGCGCCGCGCAAAC
GCTTCCTTCTTTTTGCATGCCCCTCGCTGCTTTTGTAACACCATCCCGCA
CGCGCCCGCGCCACGCCACTGCAACTGTGCCTGCGAATCGTCGTGTGTGC
CCAGCGCCCGCCCCACCCCCCCTCATCGTCGCCGTCGCGCCAAACCCCCC
CCCCTCCTCATCAAATCTTTACCTCACCTCACTTCCCTTCCCCCCCGCCG
CGCCCTTCCCCCCCCTCTCCCCCTACCGCTCCACCCCCACCCTTCCCCCT
CCCTCCCCCAAAATCCCCCGCCCGTGCGCTATGAGCAGCGCGGCGCCGCC
TCCCCCCTCCGCCGCCGACTCGTCCGCCGCGCGCACCCCTCAGCTGCCTC
CCCCCCAGGCGCTCATGGCCGCCGCCTCCGCCGCACAGCCTCCCCCACCC
CTCTCGCAGCAACCGCTGCCGCACCAGGCGCCGCTTGTGCACCATGGCCT
CCCCCCCCACTCGCACCAACAGCCACTGCACCACCACGCGCAACAGCTCT
CGCACCTCCCCACTCACCAGTCTCACCACGCTGCACACCACCCCCCCGTC
GCCCACGCCCGTTCCGCCGCCGCGCGCATCGCCCCCAACCCCTCCGCCGC
GCTGGCGCCCGGCGCCCCGCCCATCCACACCGGCGGCGTCGAGAAGCGCC
GCGCCGGCAAGTACACCCACCCGTACGGCGGCATGCGCCAGTTTGCTGAG
GATCGTGCCGCCCACTCTGGGTGGGACAACGACTGCTTGGCCATCAGCGA
CGACGACCAGCGGCGCGAGGCGCGCTCGCACCTGGCTGAGAAAATCTCCG
AGATGTACAAGGAGGAGTTTGTGCGCGTGAACAAGGCGCAGGGCAAGGGC
AGACCCAAGGCCAACAACATCTCGGCCGCCAAGAAGACGGTGCGCATGAT
CGCCGAGCGCATCCTGCTGTCGCTGGAGGCGCGCGCGCAGGCGGCGCTGC
ACAAGAGGCTCATGGACATTCGCCAGGAGAGCGAGAAGGAGCTGCGGAAA
CTGCGCCACCTGCACAAGCTTGGCAACGAAAACCCCAAGCTGAGCTACGA
CGAAATCCGCGCCATTGCGCGCTCGCGCCTGTCGCAGCACTCGGACGCGC
CGTCGTCGCCTATACCGCTCATGGGCAACGACGGCACGGAAGCGACCGAC
ATGGAGTCTGCCGAGGCGGACGCCGAGATTGAAGCTATGAAGCAGGCTAT
CATCGAAATGCGCGCCGACGAGGTGGCCAAGGGCTACAAGCCCAAGCTGC
TCAACGAGCGCTGGGTGGAACGCATGACGCAGGCGTGCAGGCGGCTGGTG
CACGAGACGTATAGCAGACAGTACGTGCCGCGCACAACGGTGTTTGGGTG
CAAGCACTTTACGCGCAAGAACCGCATCGAAATGGTGTGCTGCGGCACGT
TCCCGGTGTGCCGCATGTGCCACATCCAGGACGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_41:723489..727374-

>Gvermi3239.t2 ID=Gvermi3239.t2|Name=Gvermi3239.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1494bp|location=Sequence derived from alignment at ScGOVlb_41:723489..727374- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCATACATGTGCGGAATCGTCGGCTGTGACTGCTATCTCAACGGCGG
TGTGTCCTCGCACAACTATCACTTGCCCATACCGCGCATTGCGCAAGCCG
CTGCCATGGTGCAGCCTGCCAGCCAGTCCACCATGTCGGCGCCGTTACCG
ACCGCCCCACCGTTTTACGGCGCCCCGTCTATGCCGTATGCGTTTGCTTC
GCCGTTCTCGTACTCGGCGGCGCCACCCGGCGCCTTCCACAACATGGTGC
AGGTCAACGTCATGGAGCAAATGTACCCTCATCACCACGCGGCGCCAAAC
GCCGACGCCTCCGTGGCGGTGCACAATGTGGGCAGCGCGCAGGCAGCGGC
GAACAGCAGTAACAATGGCGTCAACTCACAGCCGAAAAGTTCTGCGGCGC
CTTTAATGAACGCGCCCAGCGGCAACAGTCTGGCGCCAGGCGCCGCCCCT
GCGCCGCAGTCAAACGTCAACTGTGCCGTGCCGCGCAACGGGTACGACAT
GTATGCTTGTTCACAGCTCAATGTGGGCTCGCAGCCACCCAACGGGGTCA
TGTACGGCGGCTTTGGTGCGCACGGGCAGGTGGGCGTCGACGCCTCGATG
ATGCTGCAAGCGAATGCAAACGGGTCTCATGGTTCGAATCCGCAGCAAAT
GTGGGCTGAGGTGGCTCACTCCAACAACCCCGGGATCTCTCACCACGCTG
CACACCACCCCCCCGTCGCCCACGCCCGTTCCGCCGCCGCGCGCATCGCC
CCCAACCCCTCCGCCGCGCTGGCGCCCGGCGCCCCGCCCATCCACACCGG
CGGCGTCGAGAAGCGCCGCGCCGGCAAGTACACCCACCCGTACGGCGGCA
TGCGCCAGTTTGCTGAGGATCGTGCCGCCCACTCTGGGTGGGACAACGAC
TGCTTGGCCATCAGCGACGACGACCAGCGGCGCGAGGCGCGCTCGCACCT
GGCTGAGAAAATCTCCGAGATGTACAAGGAGGAGTTTGTGCGCGTGAACA
AGGCGCAGGGCAAGGGCAGACCCAAGGCCAACAACATCTCGGCCGCCAAG
AAGACGGTGCGCATGATCGCCGAGCGCATCCTGCTGTCGCTGGAGGCGCG
CGCGCAGGCGGCGCTGCACAAGAGGCTCATGGACATTCGCCAGGAGAGCG
AGAAGGAGCTGCGGAAACTGCGCCACCTGCACAAGCTTGGCAACGAAAAC
CCCAAGCTGAGCTACGACGAAATCCGCGCCATTGCGCGCTCGCGCCTGTC
GCAGCACTCGGACGCGCCGTCGTCGCCTATACCGCTCATGGGCAACGACG
GCACGGAAGCGACCGACATGGAGTCTGCCGAGGCGGACGCCGAGATTGAA
GCTATGAAGCAGGCTATCATCGAAATGCGCGCCGACGAGGTGGCCAAGGG
CTACAAGCCCAAGCTGCTCAACGAGCGCTGGGTGGAACGCATGACGCAGG
CGTGCAGGCGGCTGGTGCACGAGACGTATAGCAGACAGACGTGA
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