Gvermi3200.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3200.t1
Unique NameGvermi3200.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length251
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:600475..601227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3200Gvermi3200Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 600475..601227 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3200.t1.start1Gvermi3200.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 600475..600477 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3200.t1.CDS1Gvermi3200.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 600475..601227 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3200.t1.exon1Gvermi3200.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 600475..601227 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3200.t1.stop1Gvermi3200.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 601225..601227 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3200.t1Gvermi3200.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 600475..601227 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3200.t1 ID=Gvermi3200.t1|Name=Gvermi3200.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=251bp
MFSRLPVLRLKRKQAEDGVQALQVRVNAKRRKTLKGAEQFLTGSPLAPSQ
PSFVDVVFRRVQQDDEAEELLARSDTRLIDVPAHVVQKGRQHPTRQILCN
GAPMQRVELHSSPPQGRLSEHAIAPLSIEQEDSEMYDIFTLETDGTTYDQ
APKSSLLCIDADDISLFDDQLDDESLPYTSDEDARTVDYPSTPELSSDDS
ISCASSFDNTTVHTLHSSQCDVDCVCGMGLKNVTSYAYDPYYDDSGDDHR
*
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spliced messenger RNA

>Gvermi3200.t1 ID=Gvermi3200.t1|Name=Gvermi3200.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=753bp|location=Sequence derived from alignment at ScGOVlb_41:600475..601227+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCTCGCGCCTGCCCGTGCTGCGCCTCAAGCGCAAACAAGCGGAAGA
CGGAGTGCAGGCGCTGCAAGTTCGCGTCAACGCCAAGAGAAGAAAGACGC
TCAAAGGCGCCGAACAATTTCTCACGGGCTCACCGCTCGCGCCTTCGCAG
CCGTCTTTCGTCGACGTTGTTTTTCGCCGCGTGCAGCAGGACGACGAGGC
GGAAGAACTGCTCGCGCGCTCCGACACTCGCCTCATTGACGTCCCTGCGC
ACGTCGTTCAGAAGGGGCGCCAACACCCTACGCGTCAAATCCTGTGCAAC
GGCGCGCCCATGCAACGCGTTGAGCTTCATTCCTCACCGCCTCAGGGTAG
GCTATCGGAGCATGCCATCGCCCCGCTTTCTATCGAACAGGAGGATTCTG
AGATGTACGACATATTCACCCTGGAAACTGATGGAACCACTTACGACCAA
GCCCCGAAGTCGTCGTTGCTGTGTATCGATGCTGATGATATTTCCCTGTT
TGATGACCAGCTGGACGATGAGAGTCTGCCATACACTTCTGACGAGGATG
CCAGGACGGTGGACTACCCGAGCACTCCGGAACTCTCTTCAGATGATTCG
ATCTCGTGCGCCTCGTCTTTCGACAACACTACCGTCCATACTTTGCACAG
TTCTCAATGCGACGTCGATTGCGTATGCGGCATGGGCCTGAAGAATGTCA
CTTCCTATGCATACGATCCCTACTATGATGACAGCGGTGATGATCATCGG
TAA
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protein sequence of Gvermi3200.t1

>Gvermi3200.t1 ID=Gvermi3200.t1|Name=Gvermi3200.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=251bp
MFSRLPVLRLKRKQAEDGVQALQVRVNAKRRKTLKGAEQFLTGSPLAPSQ
PSFVDVVFRRVQQDDEAEELLARSDTRLIDVPAHVVQKGRQHPTRQILCN
GAPMQRVELHSSPPQGRLSEHAIAPLSIEQEDSEMYDIFTLETDGTTYDQ
APKSSLLCIDADDISLFDDQLDDESLPYTSDEDARTVDYPSTPELSSDDS
ISCASSFDNTTVHTLHSSQCDVDCVCGMGLKNVTSYAYDPYYDDSGDDHR
*
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mRNA from alignment at ScGOVlb_41:600475..601227+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3200.t1 ID=Gvermi3200.t1|Name=Gvermi3200.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=753bp|location=Sequence derived from alignment at ScGOVlb_41:600475..601227+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCTCGCGCCTGCCCGTGCTGCGCCTCAAGCGCAAACAAGCGGAAGA
CGGAGTGCAGGCGCTGCAAGTTCGCGTCAACGCCAAGAGAAGAAAGACGC
TCAAAGGCGCCGAACAATTTCTCACGGGCTCACCGCTCGCGCCTTCGCAG
CCGTCTTTCGTCGACGTTGTTTTTCGCCGCGTGCAGCAGGACGACGAGGC
GGAAGAACTGCTCGCGCGCTCCGACACTCGCCTCATTGACGTCCCTGCGC
ACGTCGTTCAGAAGGGGCGCCAACACCCTACGCGTCAAATCCTGTGCAAC
GGCGCGCCCATGCAACGCGTTGAGCTTCATTCCTCACCGCCTCAGGGTAG
GCTATCGGAGCATGCCATCGCCCCGCTTTCTATCGAACAGGAGGATTCTG
AGATGTACGACATATTCACCCTGGAAACTGATGGAACCACTTACGACCAA
GCCCCGAAGTCGTCGTTGCTGTGTATCGATGCTGATGATATTTCCCTGTT
TGATGACCAGCTGGACGATGAGAGTCTGCCATACACTTCTGACGAGGATG
CCAGGACGGTGGACTACCCGAGCACTCCGGAACTCTCTTCAGATGATTCG
ATCTCGTGCGCCTCGTCTTTCGACAACACTACCGTCCATACTTTGCACAG
TTCTCAATGCGACGTCGATTGCGTATGCGGCATGGGCCTGAAGAATGTCA
CTTCCTATGCATACGATCCCTACTATGATGACAGCGGTGATGATCATCGG
TAA
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Coding sequence (CDS) from alignment at ScGOVlb_41:600475..601227+

>Gvermi3200.t1 ID=Gvermi3200.t1|Name=Gvermi3200.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=753bp|location=Sequence derived from alignment at ScGOVlb_41:600475..601227+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCTCGCGCCTGCCCGTGCTGCGCCTCAAGCGCAAACAAGCGGAAGA
CGGAGTGCAGGCGCTGCAAGTTCGCGTCAACGCCAAGAGAAGAAAGACGC
TCAAAGGCGCCGAACAATTTCTCACGGGCTCACCGCTCGCGCCTTCGCAG
CCGTCTTTCGTCGACGTTGTTTTTCGCCGCGTGCAGCAGGACGACGAGGC
GGAAGAACTGCTCGCGCGCTCCGACACTCGCCTCATTGACGTCCCTGCGC
ACGTCGTTCAGAAGGGGCGCCAACACCCTACGCGTCAAATCCTGTGCAAC
GGCGCGCCCATGCAACGCGTTGAGCTTCATTCCTCACCGCCTCAGGGTAG
GCTATCGGAGCATGCCATCGCCCCGCTTTCTATCGAACAGGAGGATTCTG
AGATGTACGACATATTCACCCTGGAAACTGATGGAACCACTTACGACCAA
GCCCCGAAGTCGTCGTTGCTGTGTATCGATGCTGATGATATTTCCCTGTT
TGATGACCAGCTGGACGATGAGAGTCTGCCATACACTTCTGACGAGGATG
CCAGGACGGTGGACTACCCGAGCACTCCGGAACTCTCTTCAGATGATTCG
ATCTCGTGCGCCTCGTCTTTCGACAACACTACCGTCCATACTTTGCACAG
TTCTCAATGCGACGTCGATTGCGTATGCGGCATGGGCCTGAAGAATGTCA
CTTCCTATGCATACGATCCCTACTATGATGACAGCGGTGATGATCATCGG
TAA
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