Gvermi3144.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3144.t1
Unique NameGvermi3144.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length310
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:269149..270078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog15368.BRADI3G19990.1
PFAMsMemo
Max annot lvl35493|Streptophyta
KEGG koko:K06990
Evalue3.23e-95
EggNOG OGsCOG1355@1|root,KOG3086@2759|Eukaryota,37M09@33090|Viridiplantae,3GA5S@35493|Streptophyta,3KS23@4447|Liliopsida,3I6ZD@38820|Poales
DescriptionMemo-like protein
COG categoryS
BRITEko00000,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3144Gvermi3144Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 269149..270078 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3144.t1.stop1Gvermi3144.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 269149..269151 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3144.t1.CDS1Gvermi3144.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 269149..270078 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3144.t1.exon1Gvermi3144.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 269149..270078 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3144.t1.start1Gvermi3144.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 270076..270078 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3144.t1Gvermi3144.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 269149..270078 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3144.t1 ID=Gvermi3144.t1|Name=Gvermi3144.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=310bp
MPPSRRRRATHAGSWYDASPDKLSASLQSWLRDARSATSTDHAAVAHAII
APHAGFSYSGSTAAFAYAAIDPTRFSRVIVLGPSHHVYMKDTCALSGADV
LETPLGDLPVDREVVDGLLASEDRSTRFVKISPFNDEAEHSIEMHLPFIR
LVFADLDVKVVPIVVGSLSEDKERAFGRVLSSWIGDGETFFVVSSDFCHW
GSRFGYTTVDRQSQHIWQSIEKLDREGMRCIESGDHASFCAYQRQTDNTV
CGRHPIGVLMSALAYCSSNSSHAFTTNFVRYKQSSRCMSMSDSSVSYASA
VIRTSSVDC*
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spliced messenger RNA

>Gvermi3144.t1 ID=Gvermi3144.t1|Name=Gvermi3144.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=930bp|location=Sequence derived from alignment at ScGOVlb_41:269149..270078- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACCCTCCCGCCGCCGACGCGCCACCCATGCGGGCTCCTGGTACGA
CGCCTCGCCCGATAAGCTCAGCGCCTCGCTGCAGTCTTGGCTGCGCGACG
CCCGCTCCGCCACCTCCACCGACCATGCCGCCGTTGCCCACGCCATCATC
GCCCCGCACGCCGGCTTTTCGTACTCCGGCTCCACCGCCGCCTTTGCGTA
CGCCGCCATCGATCCCACCCGCTTCTCGCGCGTCATCGTCCTGGGCCCCA
GCCACCATGTGTACATGAAGGACACGTGCGCCCTGTCCGGCGCCGACGTC
CTGGAGACCCCGCTGGGCGACCTGCCCGTCGACCGCGAGGTCGTGGACGG
CCTGCTGGCCTCCGAGGACCGCTCCACCCGCTTCGTCAAAATCAGCCCGT
TCAACGACGAGGCCGAGCACTCCATCGAGATGCACCTCCCCTTCATTCGC
CTCGTCTTCGCCGACCTCGACGTCAAGGTCGTCCCCATCGTCGTCGGCTC
CCTGTCCGAGGACAAGGAACGCGCCTTCGGCAGGGTTCTGTCCTCGTGGA
TCGGCGACGGGGAGACCTTCTTCGTCGTGTCGTCCGACTTCTGCCACTGG
GGGTCCCGCTTCGGCTACACCACCGTTGACCGCCAGTCGCAGCACATCTG
GCAAAGCATAGAGAAGCTGGACCGCGAGGGCATGCGTTGCATCGAATCCG
GAGACCATGCCTCCTTCTGCGCCTACCAACGCCAAACAGACAACACCGTT
TGTGGACGTCACCCAATAGGCGTCCTCATGAGCGCCCTGGCGTACTGCTC
CTCCAACTCTAGTCATGCCTTTACCACAAACTTTGTTCGCTACAAGCAGA
GTTCGCGCTGCATGTCCATGTCGGATTCGAGCGTTAGTTACGCCAGTGCG
GTCATTCGCACCTCGTCTGTCGACTGCTGA
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protein sequence of Gvermi3144.t1

>Gvermi3144.t1 ID=Gvermi3144.t1|Name=Gvermi3144.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=310bp
MPPSRRRRATHAGSWYDASPDKLSASLQSWLRDARSATSTDHAAVAHAII
APHAGFSYSGSTAAFAYAAIDPTRFSRVIVLGPSHHVYMKDTCALSGADV
LETPLGDLPVDREVVDGLLASEDRSTRFVKISPFNDEAEHSIEMHLPFIR
LVFADLDVKVVPIVVGSLSEDKERAFGRVLSSWIGDGETFFVVSSDFCHW
GSRFGYTTVDRQSQHIWQSIEKLDREGMRCIESGDHASFCAYQRQTDNTV
CGRHPIGVLMSALAYCSSNSSHAFTTNFVRYKQSSRCMSMSDSSVSYASA
VIRTSSVDC*
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mRNA from alignment at ScGOVlb_41:269149..270078-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3144.t1 ID=Gvermi3144.t1|Name=Gvermi3144.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=930bp|location=Sequence derived from alignment at ScGOVlb_41:269149..270078- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCACCCTCCCGCCGCCGACGCGCCACCCATGCGGGCTCCTGGTACGA
CGCCTCGCCCGATAAGCTCAGCGCCTCGCTGCAGTCTTGGCTGCGCGACG
CCCGCTCCGCCACCTCCACCGACCATGCCGCCGTTGCCCACGCCATCATC
GCCCCGCACGCCGGCTTTTCGTACTCCGGCTCCACCGCCGCCTTTGCGTA
CGCCGCCATCGATCCCACCCGCTTCTCGCGCGTCATCGTCCTGGGCCCCA
GCCACCATGTGTACATGAAGGACACGTGCGCCCTGTCCGGCGCCGACGTC
CTGGAGACCCCGCTGGGCGACCTGCCCGTCGACCGCGAGGTCGTGGACGG
CCTGCTGGCCTCCGAGGACCGCTCCACCCGCTTCGTCAAAATCAGCCCGT
TCAACGACGAGGCCGAGCACTCCATCGAGATGCACCTCCCCTTCATTCGC
CTCGTCTTCGCCGACCTCGACGTCAAGGTCGTCCCCATCGTCGTCGGCTC
CCTGTCCGAGGACAAGGAACGCGCCTTCGGCAGGGTTCTGTCCTCGTGGA
TCGGCGACGGGGAGACCTTCTTCGTCGTGTCGTCCGACTTCTGCCACTGG
GGGTCCCGCTTCGGCTACACCACCGTTGACCGCCAGTCGCAGCACATCTG
GCAAAGCATAGAGAAGCTGGACCGCGAGGGCATGCGTTGCATCGAATCCG
GAGACCATGCCTCCTTCTGCGCCTACCAACGCCAAACAGACAACACCGTT
TGTGGACGTCACCCAATAGGCGTCCTCATGAGCGCCCTGGCGTACTGCTC
CTCCAACTCTAGTCATGCCTTTACCACAAACTTTGTTCGCTACAAGCAGA
GTTCGCGCTGCATGTCCATGTCGGATTCGAGCGTTAGTTACGCCAGTGCG
GTCATTCGCACCTCGTCTGTCGACTGCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_41:269149..270078-

>Gvermi3144.t1 ID=Gvermi3144.t1|Name=Gvermi3144.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=930bp|location=Sequence derived from alignment at ScGOVlb_41:269149..270078- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCACCCTCCCGCCGCCGACGCGCCACCCATGCGGGCTCCTGGTACGA
CGCCTCGCCCGATAAGCTCAGCGCCTCGCTGCAGTCTTGGCTGCGCGACG
CCCGCTCCGCCACCTCCACCGACCATGCCGCCGTTGCCCACGCCATCATC
GCCCCGCACGCCGGCTTTTCGTACTCCGGCTCCACCGCCGCCTTTGCGTA
CGCCGCCATCGATCCCACCCGCTTCTCGCGCGTCATCGTCCTGGGCCCCA
GCCACCATGTGTACATGAAGGACACGTGCGCCCTGTCCGGCGCCGACGTC
CTGGAGACCCCGCTGGGCGACCTGCCCGTCGACCGCGAGGTCGTGGACGG
CCTGCTGGCCTCCGAGGACCGCTCCACCCGCTTCGTCAAAATCAGCCCGT
TCAACGACGAGGCCGAGCACTCCATCGAGATGCACCTCCCCTTCATTCGC
CTCGTCTTCGCCGACCTCGACGTCAAGGTCGTCCCCATCGTCGTCGGCTC
CCTGTCCGAGGACAAGGAACGCGCCTTCGGCAGGGTTCTGTCCTCGTGGA
TCGGCGACGGGGAGACCTTCTTCGTCGTGTCGTCCGACTTCTGCCACTGG
GGGTCCCGCTTCGGCTACACCACCGTTGACCGCCAGTCGCAGCACATCTG
GCAAAGCATAGAGAAGCTGGACCGCGAGGGCATGCGTTGCATCGAATCCG
GAGACCATGCCTCCTTCTGCGCCTACCAACGCCAAACAGACAACACCGTT
TGTGGACGTCACCCAATAGGCGTCCTCATGAGCGCCCTGGCGTACTGCTC
CTCCAACTCTAGTCATGCCTTTACCACAAACTTTGTTCGCTACAAGCAGA
GTTCGCGCTGCATGTCCATGTCGGATTCGAGCGTTAGTTACGCCAGTGCG
GTCATTCGCACCTCGTCTGTCGACTGCTGA
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