Gvermi3134.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3134.t1
Unique NameGvermi3134.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length227
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:176212..176975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28583.AMAG_13504T0
PFAMsPCMT
Max annot lvl4751|Fungi
KEGG koko:K00573
GOsGO:0003674,GO:0003824,GO:0004719,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0010340,GO:0016740,GO:0016741,GO:0019538,GO:0030091,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051998,GO:0071704,GO:0140096,GO:1901564
Evalue1.27e-56
EggNOG OGsCOG2518@1|root,KOG1661@2759|Eukaryota,38DY1@33154|Opisthokonta,3P13J@4751|Fungi
EC2.1.1.77
Descriptionprotein-l-isoaspartate o-methyltransferase
COG categoryH
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3134Gvermi3134Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 176212..176975 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3134.t1Gvermi3134.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 176212..176975 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3134.t1.start1Gvermi3134.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 176212..176214 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3134.t1.CDS1Gvermi3134.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 176212..176667 +
Gvermi3134.t1.CDS2Gvermi3134.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 176751..176975 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3134.t1.exon1Gvermi3134.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 176212..176667 +
Gvermi3134.t1.exon2Gvermi3134.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 176751..176975 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3134.t1.intron1Gvermi3134.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 176668..176750 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3134.t1.stop1Gvermi3134.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 176973..176975 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3134.t1 ID=Gvermi3134.t1|Name=Gvermi3134.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=227bp
MAWTCSAASNGALVDNLVRRRLLTADRAERAMRAVDRALFVPRPADAYAD
APQPLPCFATISAPHMHAMALQLLEPHLPLGAAALDVGAGSGYFAALMAV
LVGPTGCVVAVEHAAQLTDLAAANLAAFRNAPVPAASVLLRTADGRAGAS
DKAPFAAIHVGAAAPSIPQPLLDQLAPSGAMIIPVGPEHGPQHLMLVNKD
QRGAVSASSVCGVRYVPLCDLPHQLH*
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spliced messenger RNA

>Gvermi3134.t1 ID=Gvermi3134.t1|Name=Gvermi3134.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=681bp|location=Sequence derived from alignment at ScGOVlb_41:176212..176975+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTGGACGTGCTCCGCCGCCTCCAACGGCGCGCTGGTCGACAACCT
CGTGCGCCGCCGCCTGCTCACCGCCGACCGCGCCGAGCGCGCCATGCGCG
CCGTCGACCGCGCGCTCTTCGTCCCCCGCCCCGCCGACGCGTACGCCGAC
GCCCCCCAGCCGCTCCCGTGCTTCGCCACCATCTCCGCCCCCCACATGCA
CGCCATGGCGCTGCAGCTGCTCGAGCCGCACCTGCCGCTCGGCGCCGCCG
CCCTCGACGTCGGCGCCGGCAGCGGCTACTTCGCCGCGCTCATGGCCGTC
CTCGTCGGCCCCACCGGCTGCGTCGTCGCCGTCGAGCACGCCGCCCAGCT
CACCGACCTCGCCGCCGCCAACCTGGCCGCCTTCCGCAACGCCCCCGTCC
CCGCTGCCTCCGTCCTCCTGCGCACCGCCGACGGCCGCGCCGGCGCCTCC
GACAAGGCGCCGTTCGCCGCCATCCACGTCGGCGCCGCCGCGCCATCCAT
CCCGCAGCCGCTGCTGGACCAGCTGGCGCCCAGCGGCGCCATGATCATCC
CGGTCGGCCCCGAGCACGGCCCGCAGCACCTCATGCTCGTCAACAAGGAC
CAGCGCGGCGCCGTGTCCGCGTCATCCGTGTGCGGCGTGCGCTACGTGCC
GCTGTGCGACCTACCGCACCAGCTGCACTGA
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protein sequence of Gvermi3134.t1

>Gvermi3134.t1 ID=Gvermi3134.t1|Name=Gvermi3134.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=227bp
MAWTCSAASNGALVDNLVRRRLLTADRAERAMRAVDRALFVPRPADAYAD
APQPLPCFATISAPHMHAMALQLLEPHLPLGAAALDVGAGSGYFAALMAV
LVGPTGCVVAVEHAAQLTDLAAANLAAFRNAPVPAASVLLRTADGRAGAS
DKAPFAAIHVGAAAPSIPQPLLDQLAPSGAMIIPVGPEHGPQHLMLVNKD
QRGAVSASSVCGVRYVPLCDLPHQLH*
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mRNA from alignment at ScGOVlb_41:176212..176975+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3134.t1 ID=Gvermi3134.t1|Name=Gvermi3134.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=764bp|location=Sequence derived from alignment at ScGOVlb_41:176212..176975+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGTGGACGTGCTCCGCCGCCTCCAACGGCGCGCTGGTCGACAACCT
CGTGCGCCGCCGCCTGCTCACCGCCGACCGCGCCGAGCGCGCCATGCGCG
CCGTCGACCGCGCGCTCTTCGTCCCCCGCCCCGCCGACGCGTACGCCGAC
GCCCCCCAGCCGCTCCCGTGCTTCGCCACCATCTCCGCCCCCCACATGCA
CGCCATGGCGCTGCAGCTGCTCGAGCCGCACCTGCCGCTCGGCGCCGCCG
CCCTCGACGTCGGCGCCGGCAGCGGCTACTTCGCCGCGCTCATGGCCGTC
CTCGTCGGCCCCACCGGCTGCGTCGTCGCCGTCGAGCACGCCGCCCAGCT
CACCGACCTCGCCGCCGCCAACCTGGCCGCCTTCCGCAACGCCCCCGTCC
CCGCTGCCTCCGTCCTCCTGCGCACCGCCGACGGCCGCGCCGGCGCCTCC
GACAAGGTGCGTTCTcccccccccccccccccccccTTGCGCCCGCTCTG
CTTCTTCCTCCCCCTTACTAACGTGCCTCCTTTCCACAGGCGCCGTTCGC
CGCCATCCACGTCGGCGCCGCCGCGCCATCCATCCCGCAGCCGCTGCTGG
ACCAGCTGGCGCCCAGCGGCGCCATGATCATCCCGGTCGGCCCCGAGCAC
GGCCCGCAGCACCTCATGCTCGTCAACAAGGACCAGCGCGGCGCCGTGTC
CGCGTCATCCGTGTGCGGCGTGCGCTACGTGCCGCTGTGCGACCTACCGC
ACCAGCTGCACTGA
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Coding sequence (CDS) from alignment at ScGOVlb_41:176212..176975+

>Gvermi3134.t1 ID=Gvermi3134.t1|Name=Gvermi3134.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=681bp|location=Sequence derived from alignment at ScGOVlb_41:176212..176975+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGTGGACGTGCTCCGCCGCCTCCAACGGCGCGCTGGTCGACAACCT
CGTGCGCCGCCGCCTGCTCACCGCCGACCGCGCCGAGCGCGCCATGCGCG
CCGTCGACCGCGCGCTCTTCGTCCCCCGCCCCGCCGACGCGTACGCCGAC
GCCCCCCAGCCGCTCCCGTGCTTCGCCACCATCTCCGCCCCCCACATGCA
CGCCATGGCGCTGCAGCTGCTCGAGCCGCACCTGCCGCTCGGCGCCGCCG
CCCTCGACGTCGGCGCCGGCAGCGGCTACTTCGCCGCGCTCATGGCCGTC
CTCGTCGGCCCCACCGGCTGCGTCGTCGCCGTCGAGCACGCCGCCCAGCT
CACCGACCTCGCCGCCGCCAACCTGGCCGCCTTCCGCAACGCCCCCGTCC
CCGCTGCCTCCGTCCTCCTGCGCACCGCCGACGGCCGCGCCGGCGCCTCC
GACAAGGCGCCGTTCGCCGCCATCCACGTCGGCGCCGCCGCGCCATCCAT
CCCGCAGCCGCTGCTGGACCAGCTGGCGCCCAGCGGCGCCATGATCATCC
CGGTCGGCCCCGAGCACGGCCCGCAGCACCTCATGCTCGTCAACAAGGAC
CAGCGCGGCGCCGTGTCCGCGTCATCCGTGTGCGGCGTGCGCTACGTGCC
GCTGTGCGACCTACCGCACCAGCTGCACTGA
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